epinowcast/epinowcast issues and pull requests

#433 - Expand testing for Renviron as part of persistent compiled Stan models

Issue - State: open - Opened by medewitt 10 months ago
Labels: enhancement, help wanted, good first issue, infrastructure

#432 - Test (DO NOT MERGE): Is touchstone broken

Pull Request - State: closed - Opened by seabbs 10 months ago - 5 comments

#431 - Issues 268 and 307: Switch out rstan for cmdstanr when exposing stan functions and check in CI

Pull Request - State: closed - Opened by seabbs 10 months ago - 5 comments

#430 - ISSUE 305: first attempt to put reference_date >= min(report_date) into separate…

Pull Request - State: open - Opened by jimrothstein 11 months ago - 2 comments

#429 - Update functionality for preprocessed obs

Issue - State: open - Opened by adrian-lison 11 months ago
Labels: enhancement

#428 - Better handle interaction between timestep and max_delay

Issue - State: open - Opened by adrian-lison 11 months ago
Labels: documentation

#428 - Better handle interaction between timestep and max_delay

Issue - State: open - Opened by adrian-lison 11 months ago
Labels: documentation

#427 - enw_aggregate_cumulative drops case counts

Issue - State: open - Opened by adrian-lison 11 months ago
Labels: bug, documentation

#427 - enw_aggregate_cumulative drops case counts

Issue - State: open - Opened by adrian-lison 11 months ago
Labels: bug, documentation

#426 - enw_aggregate_cumulative throws error when using timestep=month

Issue - State: open - Opened by adrian-lison 11 months ago - 2 comments
Labels: bug

#425 - Issue 302: Improve commenting of maximum delay in Stan code

Pull Request - State: open - Opened by adrian-lison 11 months ago - 2 comments

#425 - Issue 302: Improve commenting of maximum delay in Stan code

Pull Request - State: open - Opened by adrian-lison 11 months ago - 3 comments

#424 - DRY out vignette headers

Issue - State: open - Opened by pearsonca 11 months ago - 1 comment
Labels: documentation, enhancement, infrastructure

#423 - Render custom stan functions using Doxygen

Issue - State: open - Opened by seabbs 11 months ago
Labels: documentation, enhancement, help wanted

#422 - Issue 314: Document stan code

Pull Request - State: closed - Opened by seabbs 11 months ago - 9 comments

#421 - Issue 415: Change all vignette authorship to be epinowcast team vs individuals

Pull Request - State: closed - Opened by seabbs 11 months ago - 4 comments

#420 - Review cmdstanr approach to documentation and implement good ideas here

Issue - State: open - Opened by seabbs 11 months ago - 1 comment
Labels: documentation, help wanted, question

#419 - Use enwtheme

Pull Request - State: closed - Opened by Bisaloo 11 months ago - 8 comments

#418 - Issue 417: run lintr in tests/

Pull Request - State: closed - Opened by Bisaloo 11 months ago - 1 comment

#417 - Set up lintr in tests

Issue - State: closed - Opened by Bisaloo 11 months ago - 1 comment
Labels: infrastructure

#416 - #407 Add pre-compiled cmdstan models

Pull Request - State: open - Opened by medewitt 11 months ago - 52 comments

#415 - Consider removing author names from vignettes

Issue - State: closed - Opened by seabbs 11 months ago - 6 comments
Labels: help wanted, question, high-priority

#414 - Hotfix: update some stan typos

Pull Request - State: closed - Opened by medewitt 11 months ago - 2 comments

#413 - Move @medewitt to author

Pull Request - State: closed - Opened by seabbs 11 months ago - 5 comments

#412 - depend on coerceDT

Pull Request - State: open - Opened by pearsonca 12 months ago - 3 comments

#411 - Build(deps): Bump JamesIves/github-pages-deploy-action from 4.4.3 to 4.5.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#410 - Re #371: moving generic items to organizational level

Pull Request - State: closed - Opened by pearsonca 12 months ago - 9 comments

#409 - Clarify how to specify priors

Issue - State: open - Opened by jamesmbaazam 12 months ago - 1 comment
Labels: documentation, enhancement, good first issue

#407 - Add pre-compiled cmdstan models

Issue - State: open - Opened by seabbs 12 months ago - 10 comments
Labels: help wanted, infrastructure, stan

#406 - Issue 263 - Add a note on package use in the quickstart

Pull Request - State: closed - Opened by kathsherratt 12 months ago - 2 comments

#405 - Issue 289: Getting help with stan vignette

Pull Request - State: closed - Opened by medewitt 12 months ago - 7 comments

#404 - Consideration of additional pre-processing helper functions

Issue - State: open - Opened by medewitt 12 months ago - 3 comments
Labels: enhancement, help wanted, question

#403 - Nowcasting with weekly data: differences for upward and downward trends

Issue - State: open - Opened by jbracher 12 months ago
Labels: enhancement, todo :spiral_notepad:

#402 - Issue 389: minimum supported R version 3.5 or 4.1

Pull Request - State: closed - Opened by medewitt 12 months ago - 43 comments

#401 - Issue 188: Switch to cli for warnings, messages and errors

Pull Request - State: closed - Opened by nikosbosse 12 months ago - 41 comments

#400 - Exposing Stan dependency versions to package users

Issue - State: open - Opened by zsusswein 12 months ago - 10 comments
Labels: help wanted, infrastructure

#399 - Issue 345: Add priors to `epinowcast` object

Pull Request - State: closed - Opened by jamesmbaazam 12 months ago - 13 comments

#397 - Standardize / clarify error / warning messages

Issue - State: open - Opened by pearsonca 12 months ago
Labels: documentation, help wanted, good first issue

#396 - DO NOT MERGE: Testing 385 solution

Pull Request - State: closed - Opened by seabbs 12 months ago - 2 comments

#395 - Add a readme to .github/workflows

Issue - State: open - Opened by seabbs 12 months ago - 1 comment
Labels: help wanted, infrastructure

#394 - DO NOT MERGE: Test PR for issue 385

Pull Request - State: closed - Opened by seabbs 12 months ago - 5 comments

#393 - Revise Package Summary?

Issue - State: open - Opened by pearsonca 12 months ago - 2 comments
Labels: documentation, help wanted

#392 - Issue 362: Trimmer README

Pull Request - State: closed - Opened by pearsonca 12 months ago - 9 comments

#391 - Issue 299: Stop asking contributors to increment the development version

Pull Request - State: closed - Opened by seabbs 12 months ago - 1 comment

#390 - Rely on pkgdown default behaviour to create 'Get started' page

Pull Request - State: closed - Opened by Bisaloo 12 months ago - 6 comments

#389 - minimum supported R version 3.5 or 4.1

Issue - State: closed - Opened by medewitt 12 months ago - 4 comments
Labels: documentation, enhancement, help wanted, infrastructure

#388 - Hotfix: Logo in readme placement

Pull Request - State: closed - Opened by seabbs 12 months ago - 1 comment

#387 - opportunity: `make`-based approach to some automation

Issue - State: open - Opened by pearsonca 12 months ago
Labels: documentation, enhancement, infrastructure

#386 - Issue 385: GitHub Action to check compilation and correctness of `cmdstan` syntax.

Pull Request - State: closed - Opened by seabbs 12 months ago - 9 comments

#385 - GitHub Action to check that stan syntax is up to date

Issue - State: closed - Opened by seabbs 12 months ago
Labels: infrastructure, stan

#384 - General improvements to Getting Started vignette

Issue - State: open - Opened by jamesmbaazam 12 months ago - 1 comment
Labels: documentation, enhancement, help wanted, infrastructure

#383 - Add full package linting to main in addition to changed files linting on PRs

Issue - State: open - Opened by seabbs 12 months ago
Labels: enhancement, help wanted

#382 - Issue 378: Use lintr::lint_package() and resolve all issues found package wide

Pull Request - State: closed - Opened by seabbs 12 months ago - 4 comments

#381 - pkgdown auto linking - rendering error?

Issue - State: open - Opened by pearsonca 12 months ago - 3 comments
Labels: bug, wontfix

#380 - Amend coding style section of contribution guide

Issue - State: open - Opened by jamesmbaazam 12 months ago
Labels: documentation, help wanted, infrastructure

#379 - Improving the workflow for README updating

Issue - State: open - Opened by pearsonca almost 1 year ago - 8 comments
Labels: enhancement, help wanted, infrastructure

#378 - Use == to match length-1 scalars, not %in%. Note that == preserves NA where %in% does not.

Issue - State: closed - Opened by seabbs almost 1 year ago
Labels: bug

#377 - Build(deps): Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] almost 1 year ago - 1 comment
Labels: dependencies

#376 - Issue 188: Switch to rlang for warnings, messages and errors

Pull Request - State: closed - Opened by nikosbosse about 1 year ago - 7 comments

#375 - Issue 362: Move README quick start to vignette and improve general README formatting

Pull Request - State: closed - Opened by pearsonca about 1 year ago - 16 comments
Labels: documentation

#374 - Issue 373: Fix NEWS item

Pull Request - State: closed - Opened by jamesmbaazam about 1 year ago

#373 - Correct NEWS to reflect changes in PR #365

Issue - State: closed - Opened by jamesmbaazam about 1 year ago

#372 - Stan resources

Pull Request - State: closed - Opened by medewitt about 1 year ago - 1 comment

#371 - Move generic community elements (e.g. Code of Conduct) to organizational level

Issue - State: closed - Opened by pearsonca about 1 year ago - 5 comments
Labels: documentation

#370 - Experimental to stable?

Issue - State: open - Opened by seabbs about 1 year ago
Labels: documentation, help wanted, high-priority

#369 - Issue 367: Add system to keep citation files in sync with DESCRIPTION

Pull Request - State: closed - Opened by jamesmbaazam about 1 year ago - 4 comments

#368 - `simulate_double_censored_pmf()` could enforce a sum-to-one

Issue - State: open - Opened by zsusswein about 1 year ago - 9 comments
Labels: enhancement

#367 - Set up system to sync `CITATION` and `DESCRIPTION` as well as `citation.cff`.

Issue - State: closed - Opened by jamesmbaazam about 1 year ago - 1 comment
Labels: enhancement

#366 - Issue 328: option to remove within-chain parallelisation

Pull Request - State: closed - Opened by sbfnk about 1 year ago - 10 comments

#365 - Issue 344: Rename enw_delay_filter()

Pull Request - State: closed - Opened by kathsherratt about 1 year ago - 5 comments

#364 - Build(deps): Bump n1hility/cancel-previous-runs from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#363 - Build(deps): Bump docker/login-action from 1 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies

#362 - Moving README quick start to a vignette and slim down README using drop downs

Issue - State: closed - Opened by seabbs about 1 year ago - 2 comments
Labels: documentation, help wanted, good first issue

#361 - 0.3.0 release?

Issue - State: open - Opened by seabbs about 1 year ago - 2 comments
Labels: enhancement, help wanted