epigenelabs/pyComBat issues and pull requests

#38 - chore: pip encoding error in non-English windows.

Pull Request - State: open - Opened by EstrellaXD 7 months ago

#37 - update documentation to include the warning about migration to inmoose

Pull Request - State: closed - Opened by EpigeneMax about 1 year ago

#36 - fix URL to inmoose repo

Pull Request - State: closed - Opened by EpigeneMax about 1 year ago

#35 - pycombat for bulk RNAseq dataset?

Issue - State: closed - Opened by hhageBA about 1 year ago - 1 comment

#34 - Add migration warning to InMoose

Pull Request - State: closed - Opened by EpigeneMax over 1 year ago

#33 - ⬆️ Bump dependencies and fix coming deprecations

Pull Request - State: open - Opened by antoinegaston almost 2 years ago

#32 - Reference batch: code clean-up + doc update

Pull Request - State: closed - Opened by EpigeneMax almost 2 years ago

#31 - Degree of freedom for variance calculation

Issue - State: open - Opened by coldfire79 almost 2 years ago - 1 comment

#30 - Use `ddof=1` in np.var for the unbiased estimator of the variance

Pull Request - State: open - Opened by coldfire79 about 2 years ago

#29 - remove genes with zero variance in specific batches

Pull Request - State: open - Opened by guillaumeap about 2 years ago

#28 - typos in detailed docs

Issue - State: closed - Opened by julienrichardalbert about 2 years ago - 1 comment
Labels: documentation

#27 - All values in the dataframe are "NAN" after running pycombat

Issue - State: open - Opened by fredsamhaak about 2 years ago - 8 comments
Labels: bug

#26 - Error handling for confounded variables

Pull Request - State: closed - Opened by aryoepigene over 2 years ago

#25 - Strictly use pd.Series for treating batches

Pull Request - State: closed - Opened by aryoepigene over 2 years ago

#24 - Update dependency versions limit

Pull Request - State: closed - Opened by aryoepigene over 2 years ago
Labels: enhancement

#23 - Performance in Parallel

Issue - State: open - Opened by haizi-zh almost 3 years ago - 1 comment
Labels: enhancement

#22 - Update copyright on scripts

Issue - State: closed - Opened by aryoepigene almost 3 years ago - 1 comment

#21 - inquiries about ref_batch

Issue - State: closed - Opened by tadahayamiz about 3 years ago - 2 comments
Labels: bug

#20 - Automatic detection of batch of size = 1

Issue - State: open - Opened by soleneweill about 3 years ago
Labels: enhancement

#19 - V0.4.0

Pull Request - State: open - Opened by aryoepigene about 3 years ago
Labels: enhancement

#18 - Precision mode fix; Approximation for all samples; Minor style fix

Pull Request - State: closed - Opened by sergiigladchuk about 3 years ago
Labels: bug

#17 - Minor typo

Pull Request - State: closed - Opened by GianArauz about 3 years ago - 2 comments

#16 - ZeroDivisionError: division by zero

Issue - State: closed - Opened by aliechoes about 3 years ago - 5 comments

#15 - Using this code more generally

Issue - State: closed - Opened by sama2689 about 3 years ago - 4 comments

#14 - Replace patsy

Pull Request - State: closed - Opened by abdelkaderbehdenna over 3 years ago

#13 - V0.2.2

Pull Request - State: closed - Opened by abdelkaderbehdenna over 3 years ago

#12 - Fit transform and transform

Issue - State: open - Opened by PARODBE over 3 years ago - 1 comment
Labels: enhancement

#11 - add updated dependencies to setup.py

Pull Request - State: closed - Opened by aryoepigene over 3 years ago

#10 - local variable 'B_hat' referenced before assignment when dataframe contains NaN

Issue - State: closed - Opened by such3r over 3 years ago - 1 comment
Labels: bug

#9 - No module named 'mpmath'

Issue - State: closed - Opened by such3r over 3 years ago - 2 comments

#8 - Multiple covariates

Pull Request - State: closed - Opened by guillaumeap over 3 years ago

#7 - we can put the condition before the two last computations.

Issue - State: closed - Opened by julienhaziza over 3 years ago

#6 - V0.2.1