Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / epigenelabs/inmoose issues and pull requests
#81 - harmonize _isAllZero behavior on dataframes and ndarrays
Pull Request -
State: open - Opened by EpigeneMax 3 days ago
#80 - Cr 421
Pull Request -
State: open - Opened by EpigeneMax 4 days ago
#79 - Issue running ComBat-seq
Issue -
State: open - Opened by richard-k-perez 8 days ago
- 1 comment
#78 - Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.1
Pull Request -
State: closed - Opened by dependabot[bot] 11 days ago
Labels: dependencies
#77 - Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0
Pull Request -
State: closed - Opened by dependabot[bot] 18 days ago
- 1 comment
Labels: dependencies
#76 - allow arbitrary type for batch and group in `sim_rnaseq`
Pull Request -
State: closed - Opened by EpigeneMax 21 days ago
#75 - lfcShrink() is not available in DEseq2
Issue -
State: open - Opened by chenha0w 21 days ago
- 1 comment
#74 - update numpy version constraint
Pull Request -
State: closed - Opened by EpigeneMax 22 days ago
#73 - ensure meta-analysis is robust to NaN p-values
Pull Request -
State: closed - Opened by EpigeneMax 22 days ago
#72 - fix array indexing bug
Pull Request -
State: closed - Opened by EpigeneMax about 1 month ago
#71 - RunCombat for methylation arrays
Issue -
State: open - Opened by brj0 about 1 month ago
- 1 comment
#70 - Compilation error w/ gcc for early versions of inmoose
Issue -
State: open - Opened by XikunZhang 2 months ago
- 1 comment
#69 - Release 0.7.1
Pull Request -
State: closed - Opened by EpigeneMax 2 months ago
#68 - CR-355 improve documentation landing page
Pull Request -
State: closed - Opened by EpigeneMax 2 months ago
#67 - CR-354 inform coveralls.io that our pipeline has parallel jobs
Pull Request -
State: closed - Opened by EpigeneMax 2 months ago
#66 - CR-353 fix rendering of DEResults on readthedocs
Pull Request -
State: closed - Opened by EpigeneMax 2 months ago
#65 - CR-352 fix a faulty constructor
Pull Request -
State: closed - Opened by EpigeneMax 2 months ago
#64 - CR-219 add meta-analysis for differential expression
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
#63 - CR-305 harmonize diffexp results from limma
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
#62 - [CR-305] harmonizing diff exp results (edgepy part)
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
#61 - Warnings cleanup
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
#60 - CR-305 Use DataFrame for counts in DGEList
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
- 1 comment
#59 - Release 0.6.0
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
#58 - CR-309 compatibility with numpy 2.0.0
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
- 1 comment
#57 - Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#56 - Pythonize/Cythonize C++ code
Pull Request -
State: closed - Opened by EpigeneMax 3 months ago
#55 - bump version to 0.5.1
Pull Request -
State: closed - Opened by EpigeneMax 4 months ago
#54 - fix row and columns name for dataframe
Pull Request -
State: closed - Opened by Lea-Meunier 4 months ago
#53 - Release 0.5.0
Pull Request -
State: closed - Opened by EpigeneMax 4 months ago
#52 - Use ruff to lint code
Pull Request -
State: closed - Opened by EpigeneMax 4 months ago
#51 - Bump coverallsapp/github-action from 2.2.3 to 2.3.0
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#50 - Replaced logging module with a package logger variable
Pull Request -
State: closed - Opened by VasLem 5 months ago
- 3 comments
#49 - Provide a real logger and stop overriding the root one
Issue -
State: closed - Opened by VasLem 5 months ago
- 2 comments
#48 - CR-263 eBayes and topTable
Pull Request -
State: closed - Opened by EpigeneMax 5 months ago
#47 - CR-263 contrasts-related functions from limma
Pull Request -
State: closed - Opened by EpigeneMax 5 months ago
#46 - CR-263 duplicates from limma
Pull Request -
State: closed - Opened by EpigeneMax 5 months ago
#45 - CR-263 lmfit functions from limma
Pull Request -
State: closed - Opened by EpigeneMax 5 months ago
#44 - CR-263 tmixture functions
Pull Request -
State: closed - Opened by EpigeneMax 5 months ago
#43 - add experimental support for MSVC
Pull Request -
State: closed - Opened by EpigeneMax 6 months ago
#42 - Add R-like functions for fitting linear models
Pull Request -
State: closed - Opened by EpigeneMax 6 months ago
#41 - Cleanup warnings
Pull Request -
State: closed - Opened by EpigeneMax 6 months ago
#40 - Using ComBat on transcript counts
Issue -
State: open - Opened by VikArz02 6 months ago
- 1 comment
#39 - fix ylim stability plot
Pull Request -
State: closed - Opened by Lea-Meunier 7 months ago
#38 - Bump GitHub actions
Pull Request -
State: closed - Opened by EpigeneMax 8 months ago
#37 - Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.11
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#36 - Bump actions/upload-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#35 - Bump actions/download-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#34 - Bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#33 - Bump actions/checkout from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies
#32 - Support Python 3.12
Issue -
State: closed - Opened by EpigeneMax 8 months ago
#31 - Support Python 3.12
Pull Request -
State: closed - Opened by EpigeneMax 8 months ago
#30 - CR-154 setup workflow for coverage report
Pull Request -
State: closed - Opened by EpigeneMax 8 months ago
- 1 comment
#29 - fix documentation build
Pull Request -
State: closed - Opened by EpigeneMax 8 months ago
#28 - Improve check input message
Pull Request -
State: closed - Opened by Lea-Meunier 8 months ago
#27 - [CR 151] port edgeR functions necessary for differential expression
Pull Request -
State: closed - Opened by EpigeneMax 8 months ago
- 1 comment
#26 - fix issue #25 and #10
Pull Request -
State: closed - Opened by Lea-Meunier 9 months ago
#25 - Error when data type is DataFrame and na_cov_action="remove"
Issue -
State: closed - Opened by Lea-Meunier 9 months ago
#24 - port variance stabilizing transformation from DESeq2
Pull Request -
State: closed - Opened by EpigeneMax 9 months ago
#23 - implement CR-133
Pull Request -
State: closed - Opened by EpigeneMax 9 months ago
#22 - update reference of our pycombat article
Pull Request -
State: closed - Opened by EpigeneMax 10 months ago
#21 - add verbose to consensus clustering computation
Pull Request -
State: closed - Opened by guillaumeap 10 months ago
#20 - fix doc building on readthedocs.org
Pull Request -
State: closed - Opened by EpigeneMax 10 months ago
#19 - Add pasilla and airway datasets to inmoose
Pull Request -
State: closed - Opened by EpigeneMax 10 months ago
#18 - Add return single sample batch name when detected
Issue -
State: closed - Opened by Lea-Meunier 10 months ago
#17 - Use black to format code and add a formatting check to the CI/CD pipeline
Pull Request -
State: closed - Opened by EpigeneMax 11 months ago
#16 - Improve covariates use
Pull Request -
State: closed - Opened by Lea-Meunier 11 months ago
#15 - Covariates data format in make_design_matrix
Issue -
State: closed - Opened by Lea-Meunier 11 months ago
#14 - error with ref_batch due to incorrect slicing
Issue -
State: open - Opened by alexandradanyi 11 months ago
- 1 comment
#13 - raise ValueError if not a np ndarray (or pandas DataFrame)
Pull Request -
State: closed - Opened by ceesu 12 months ago
- 1 comment
#12 - Support LLP64 data model
Pull Request -
State: open - Opened by EpigeneMax 12 months ago
#11 - compilation error with MSVC
Issue -
State: open - Opened by EpigeneMax 12 months ago
- 2 comments
#10 - reshape keep from pycombat_seq
Issue -
State: closed - Opened by ceesu 12 months ago
- 4 comments
#9 - port deseq2 to Python
Pull Request -
State: closed - Opened by EpigeneMax almost 1 year ago
- 2 comments
#8 - Add proper documentation to the data simulation module
Pull Request -
State: closed - Opened by EpigeneMax almost 1 year ago
#7 - Consensus clustering
Pull Request -
State: closed - Opened by soleneweill about 1 year ago
#6 - add RNASeq data simulation based on Splat model
Pull Request -
State: closed - Opened by EpigeneMax about 1 year ago
#5 - Consensus Clustering
Issue -
State: closed - Opened by soleneweill about 1 year ago
- 1 comment
Labels: enhancement
#4 - NumPY RuntimeWarning: divide by zero encountered in true_divide
Issue -
State: open - Opened by SantosRAC about 1 year ago
- 3 comments
#3 - Documentation
Pull Request -
State: closed - Opened by EpigeneMax over 1 year ago
#2 - pycombat module and function harmonization
Pull Request -
State: closed - Opened by EpigeneMax over 1 year ago
#1 - CI/CD Github Actions
Pull Request -
State: closed - Opened by EpigeneMax over 1 year ago