Ecosyste.ms: Issues

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GitHub / epigen/dea_limma issues and pull requests

#12 - consider determining the exact output files from the start for complete compatibility

Issue - State: open - Opened by sreichl 8 months ago - 2 comments
Labels: enhancement

#11 - consider capping heatmaps

Issue - State: closed - Opened by sreichl 9 months ago - 1 comment
Labels: enhancement

#10 - consider including edgeR 4.0 workflow

Issue - State: closed - Opened by sreichl 9 months ago
Labels: enhancement

#9 - logFC heatmap job does not complete if no DEGs detected

Issue - State: closed - Opened by dariarom94 about 1 year ago
Labels: bug

#8 - support contrasts

Issue - State: closed - Opened by sreichl over 1 year ago - 1 comment
Labels: documentation

#7 - consider saving $E expression matrix that is used in the lmFit linear model

Issue - State: closed - Opened by sreichl over 1 year ago
Labels: enhancement

#6 - volcano plot: below indicate absolute LFC being used

Issue - State: closed - Opened by sreichl over 1 year ago
Labels: bug

#5 - DEA statistics barplot split of up and down by sign

Issue - State: closed - Opened by sreichl over 1 year ago
Labels: enhancement

#4 - volcano plots legend has duplicate entries

Issue - State: closed - Opened by sreichl over 1 year ago - 1 comment
Labels: bug

#3 - add example config, annotation and data

Issue - State: open - Opened by sreichl over 1 year ago
Labels: documentation

#2 - Snakemake v 7.21 requires output file in rule all

Issue - State: closed - Opened by dariarom94 over 1 year ago - 1 comment