epiforecasts/covid-us-forecasts issues and pull requests

#114 - updates to use window

Pull Request - State: closed - Opened by seabbs over 3 years ago

#113 - Update format-forecast-us.R

Pull Request - State: closed - Opened by seabbs over 3 years ago - 1 comment

#112 - adds proc pop

Pull Request - State: closed - Opened by seabbs over 3 years ago

#111 - Shuffle plots

Pull Request - State: closed - Opened by kathsherratt over 3 years ago - 2 comments

#110 - Refresh get data function

Pull Request - State: closed - Opened by kathsherratt over 3 years ago

#109 - Explore manual intervention

Issue - State: open - Opened by kathsherratt over 3 years ago - 1 comment
Labels: enhancement

#108 - Score past forecasts

Issue - State: open - Opened by kathsherratt over 3 years ago
Labels: priority

#107 - Automated submission

Issue - State: open - Opened by kathsherratt over 3 years ago
Labels: enhancement

#106 - Shiny app for pre-submission manual review

Issue - State: closed - Opened by kathsherratt over 3 years ago - 1 comment
Labels: enhancement

#105 - State-by-state QRA

Issue - State: open - Opened by kathsherratt over 3 years ago - 1 comment
Labels: enhancement

#104 - Update update-conv.R

Pull Request - State: closed - Opened by seabbs over 3 years ago - 5 comments

#103 - 210412 update ensemble

Pull Request - State: closed - Opened by kathsherratt over 3 years ago

#102 - edit ensemble

Pull Request - State: closed - Opened by kathsherratt over 3 years ago - 2 comments

#101 - Submission this week

Issue - State: closed - Opened by seabbs over 3 years ago - 1 comment

#100 - Update forecast.sh

Pull Request - State: closed - Opened by seabbs over 3 years ago - 2 comments

#99 - Drop naive model

Pull Request - State: closed - Opened by seabbs over 3 years ago - 1 comment

#98 - Review time series ensemble

Issue - State: open - Opened by sophiemeakin over 3 years ago - 1 comment
Labels: enhancement

#97 - Data handling

Issue - State: open - Opened by seabbs over 3 years ago - 1 comment
Labels: enhancement

#96 - load_observations() returns too many deaths

Issue - State: open - Opened by nikosbosse over 3 years ago - 15 comments

#95 - update branch with Master

Pull Request - State: closed - Opened by nikosbosse over 3 years ago - 1 comment

#94 - Improve QRA

Issue - State: open - Opened by nikosbosse over 3 years ago - 3 comments

#93 - Anomaly detection: round 2

Issue - State: open - Opened by kathsherratt over 3 years ago - 5 comments
Labels: priority

#92 - Add summary report

Pull Request - State: closed - Opened by kathsherratt over 3 years ago - 4 comments

#91 - QRA by horizon

Issue - State: open - Opened by seabbs over 3 years ago

#90 - Data import args

Issue - State: closed - Opened by seabbs over 3 years ago - 1 comment
Labels: question

#89 - Remove anomaly check

Pull Request - State: closed - Opened by kathsherratt over 3 years ago

#88 - add contant baseline model

Pull Request - State: open - Opened by nikosbosse over 3 years ago - 6 comments

#87 - To do

Issue - State: open - Opened by kathsherratt over 3 years ago - 1 comment

#86 - Individual model checks & null model

Issue - State: open - Opened by kathsherratt over 3 years ago

#85 - Check 1 wk ahead forecast is somewhere near data

Pull Request - State: open - Opened by kathsherratt over 3 years ago - 4 comments

#84 - Increasing quantiles

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago - 1 comment

#83 - Add forecast count into cumulative count

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago - 1 comment

#82 - Streamline submission

Pull Request - State: closed - Opened by seabbs almost 4 years ago

#81 - fix new year bug

Pull Request - State: closed - Opened by seabbs almost 4 years ago

#80 - complete submission

Pull Request - State: closed - Opened by seabbs almost 4 years ago

#79 - Deaths from cases

Pull Request - State: closed - Opened by seabbs almost 4 years ago

#78 - Rt pop arg

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago - 2 comments

#77 - Running on a server

Issue - State: closed - Opened by kathsherratt almost 4 years ago - 2 comments

#76 - Add population argument to Epinow2

Issue - State: closed - Opened by kathsherratt almost 4 years ago - 3 comments

#75 - Historic backcalc

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago

#74 - 2020 11 08

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago

#73 - Update run-rt-forecast.R

Pull Request - State: closed - Opened by seabbs almost 4 years ago - 4 comments

#72 - Weekly/daily time series

Issue - State: closed - Opened by kathsherratt almost 4 years ago - 1 comment

#71 - Update 18/10/2020

Issue - State: closed - Opened by seabbs almost 4 years ago - 2 comments

#70 - Update to work with EpiNow2 1.2.1

Issue - State: closed - Opened by seabbs almost 4 years ago - 1 comment

#69 - Update format-timeseries-fn.R

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago

#68 - correct timeseries cumulative forecast formatting

Pull Request - State: closed - Opened by kathsherratt almost 4 years ago

#67 - Filter samples

Pull Request - State: closed - Opened by seabbs about 4 years ago - 1 comment

#66 - 14/09/20 weekly qra fix

Pull Request - State: closed - Opened by kathsherratt about 4 years ago - 1 comment

#65 - No delay rt

Pull Request - State: closed - Opened by seabbs about 4 years ago

#64 - Update run-rt-forecast.R

Pull Request - State: closed - Opened by seabbs about 4 years ago - 1 comment

#63 - update.sh is very noisy

Issue - State: closed - Opened by seabbs about 4 years ago - 1 comment

#62 - German adjustments

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#61 - Update app

Pull Request - State: closed - Opened by sophiemeakin about 4 years ago

#60 - Adds new models and processing

Pull Request - State: closed - Opened by seabbs about 4 years ago - 2 comments

#59 - full update

Pull Request - State: closed - Opened by seabbs about 4 years ago - 1 comment

#58 - Easier history rt

Pull Request - State: closed - Opened by seabbs about 4 years ago

#57 - sum of states qra

Pull Request - State: closed - Opened by kathsherratt about 4 years ago

#56 - corrected all_dates

Pull Request - State: closed - Opened by seabbs about 4 years ago

#55 - fix update-all-models.R so that models aren't rerun

Pull Request - State: closed - Opened by seabbs about 4 years ago

#54 - make it easier to run historic Rt estimates

Pull Request - State: closed - Opened by seabbs about 4 years ago - 2 comments

#53 - Infinite Rt models

Pull Request - State: closed - Opened by kathsherratt about 4 years ago - 1 comment

#52 - National from state forecast

Pull Request - State: closed - Opened by sophiemeakin about 4 years ago

#51 - Remove EpiNow1 code

Pull Request - State: closed - Opened by kathsherratt about 4 years ago - 1 comment

#50 - General to-do

Issue - State: closed - Opened by kathsherratt about 4 years ago - 1 comment

#49 - Update update-rt-forecast.R

Pull Request - State: closed - Opened by seabbs about 4 years ago

#48 - State QRA ensemble

Pull Request - State: closed - Opened by kathsherratt about 4 years ago - 1 comment

#47 - Update forecasts

Pull Request - State: closed - Opened by seabbs about 4 years ago - 1 comment

#46 - daily time-series forecast

Pull Request - State: closed - Opened by kathsherratt about 4 years ago

#45 - Clean up EpiNow code

Issue - State: closed - Opened by seabbs about 4 years ago - 1 comment

#44 - Adding new models

Issue - State: closed - Opened by kathsherratt about 4 years ago - 1 comment

#43 - Add epinow2

Pull Request - State: closed - Opened by kathsherratt about 4 years ago

#42 - switched to using an updated version of scoringutils

Pull Request - State: closed - Opened by nikosbosse about 4 years ago - 2 comments

#41 - Update update-rt-forecast.R

Pull Request - State: closed - Opened by seabbs about 4 years ago - 1 comment

#40 - Add epinow2

Pull Request - State: closed - Opened by kathsherratt about 4 years ago

#39 - Rt format dates

Pull Request - State: closed - Opened by kathsherratt about 4 years ago

#38 - Crps ensemble

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#37 - Update qra submission

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#36 - Update submission

Pull Request - State: closed - Opened by nikosbosse about 4 years ago - 1 comment

#35 - added functionality to store past forecasts as samples

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#34 - Update metadata-epiforecasts-ensemble1

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#33 - Clean up

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#32 - Qra ensemble

Pull Request - State: closed - Opened by nikosbosse about 4 years ago

#31 - Evaluation

Pull Request - State: closed - Opened by nikosbosse about 4 years ago - 1 comment

#30 - update branch

Pull Request - State: closed - Opened by nikosbosse over 4 years ago

#29 - Data anomalies

Pull Request - State: closed - Opened by kathsherratt over 4 years ago

#28 - Set up expert elicitation as a model to be included in our ensemble with the Rt and time-series

Issue - State: closed - Opened by seabbs over 4 years ago - 2 comments

#27 - Transition to new Rt back-calculation method

Issue - State: closed - Opened by seabbs over 4 years ago - 8 comments

#26 - Enable end-to-end run

Pull Request - State: closed - Opened by kathsherratt over 4 years ago

#25 - Expert elicitation

Pull Request - State: closed - Opened by sophiemeakin over 4 years ago

#24 - Visualisation

Pull Request - State: closed - Opened by nikosbosse over 4 years ago - 2 comments

#23 - Test drive: fixes and cleaning

Pull Request - State: closed - Opened by kathsherratt over 4 years ago

#22 - Timeseries bug fix

Pull Request - State: closed - Opened by kathsherratt over 4 years ago

#21 - Restructuring

Pull Request - State: closed - Opened by nikosbosse over 4 years ago - 11 comments

#20 - merge recent changes from master

Pull Request - State: closed - Opened by nikosbosse over 4 years ago

#19 - Forecasting app

Pull Request - State: closed - Opened by sophiemeakin over 4 years ago

#18 - Forecast visualisation

Pull Request - State: closed - Opened by sophiemeakin over 4 years ago

#17 - Add ensembling

Pull Request - State: closed - Opened by nikosbosse over 4 years ago

#11 - Add a script to run past forecasts

Pull Request - State: closed - Opened by nikosbosse over 4 years ago - 1 comment

#2 - Rt forecast pilot

Pull Request - State: closed - Opened by kathsherratt over 4 years ago

GitHub / epiforecasts/covid-us-forecasts issues and pull requests