Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / epiforecasts/EpiNow2 issues and pull requests
#512 - Use of choices here and elsewhere should be moved into the argument default
Issue -
State: closed - Opened by seabbs 11 months ago
- 1 comment
Labels: enhancement, good first issue
#511 - Use more consistent representations in function documentation and hyperlink functions
Pull Request -
State: closed - Opened by jamesmbaazam 11 months ago
- 3 comments
Labels: documentation
#510 - Consistency in documentation style
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
- 1 comment
Labels: documentation
#509 - forecast_infections
Issue -
State: closed - Opened by seabbs 11 months ago
- 1 comment
#508 - Hyperlink `*_opts()` functions for better signposting in help files
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
#507 - Example data set for `estimate_truncation`
Issue -
State: closed - Opened by sbfnk 11 months ago
#506 - Documentation of `reported_cases` should not refer to integers
Issue -
State: closed - Opened by sbfnk 11 months ago
- 1 comment
#505 - Remove references to "confirmed" cases
Issue -
State: open - Opened by sbfnk 11 months ago
- 2 comments
#504 - distribution interface to `dist_spec`
Pull Request -
State: closed - Opened by sbfnk 11 months ago
- 45 comments
#503 - deprecate `fixed` argument to `dist_spec`
Pull Request -
State: closed - Opened by sbfnk 11 months ago
- 2 comments
#502 - fix check for fixed delay distribution
Pull Request -
State: closed - Opened by sbfnk 11 months ago
- 1 comment
#501 - Fix partial matching
Pull Request -
State: closed - Opened by jamesmbaazam 11 months ago
- 1 comment
#500 - Support skipping NAs in the likelihood
Issue -
State: closed - Opened by seabbs 11 months ago
- 2 comments
#499 - Safeguards against partial matching
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
- 2 comments
#498 - gamma_dist_def: scale is inverse scale?
Issue -
State: closed - Opened by seabbs 11 months ago
- 1 comment
Labels: bug
#496 - Add section on acknowledging contributions to CONTRIBUTION.md
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
- 1 comment
#495 - Reporting templates and the `report` package
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
- 4 comments
#494 - Fix default value for `generation_time` in `regional_epinow()`
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
- 1 comment
Labels: bug
#493 - Move `secondary_opts()` to `opts.R` for findability
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
Labels: refactor
#492 - Update outdated actions
Issue -
State: closed - Opened by sbfnk 11 months ago
- 1 comment
#491 - Replace `update_list()` with `utils::modifyList()`
Pull Request -
State: closed - Opened by jamesmbaazam 11 months ago
Labels: refactor
#490 - Missing PR number in NEWS
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
#489 - Rmd check showing as failing in README but actually passing?
Issue -
State: closed - Opened by seabbs 11 months ago
Labels: bug
#488 - Is `EpiNow2::update_list()` `utils::modifyList()`?
Issue -
State: closed - Opened by jamesmbaazam 11 months ago
- 1 comment
Labels: refactor
#487 - Update phi parameterisation
Pull Request -
State: closed - Opened by seabbs 12 months ago
- 2 comments
#486 - Issue 485: Update the phi parameterisation
Pull Request -
State: closed - Opened by seabbs 12 months ago
- 6 comments
#485 - phi = 1 / sqrt(sqrt_phi) -> phi = 1 / sqrt_phi ^ 2
Issue -
State: closed - Opened by seabbs 12 months ago
- 1 comment
#484 - stan model chunks
Pull Request -
State: closed - Opened by sbfnk 12 months ago
- 11 comments
#483 - revert to use CRAN version of rstan
Pull Request -
State: closed - Opened by sbfnk 12 months ago
- 1 comment
#482 - Quick start in README vs. workflow vignette
Issue -
State: closed - Opened by sbfnk 12 months ago
- 21 comments
Labels: documentation
#481 - Replace get functions with examples for delay distributions
Pull Request -
State: closed - Opened by sbfnk 12 months ago
- 8 comments
#480 - Fix partial matching of dist to distribution in dist_spec()
Pull Request -
State: closed - Opened by jamesmbaazam 12 months ago
#478 - Zeta -> Z
Pull Request -
State: closed - Opened by seabbs 12 months ago
#477 - Zeta is Z
Issue -
State: closed - Opened by seabbs 12 months ago
- 1 comment
Labels: bug
#476 - Add input validation
Pull Request -
State: closed - Opened by jamesmbaazam 12 months ago
- 24 comments
#475 - Tricks to increase development speed
Issue -
State: closed - Opened by jamesmbaazam 12 months ago
- 1 comment
Labels: discussion
#474 - fix bounds of initial conditions for delays
Pull Request -
State: closed - Opened by sbfnk 12 months ago
- 1 comment
#473 - Fix partial matching of `dist` to `distribution` in `get_generation_time()`
Issue -
State: closed - Opened by jamesmbaazam 12 months ago
- 4 comments
#472 - cmdstanr version
Pull Request -
State: closed - Opened by sbfnk 12 months ago
- 1 comment
#471 - Testing using rstan develop branch
Issue -
State: closed - Opened by sbfnk 12 months ago
- 7 comments
#470 - manually install up-to-date rstan in action
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#469 - testing with updated rstan
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#468 - Clearer distinguish length and max
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 2 comments
#467 - Keep CITATION and `citation.cff` in sync with DESCRIPTION
Pull Request -
State: closed - Opened by jamesmbaazam about 1 year ago
- 9 comments
#466 - Add workflow to sync citation file with DESCRIPTION.
Issue -
State: closed - Opened by jamesmbaazam about 1 year ago
- 1 comment
#465 - James Azam -> author
Pull Request -
State: closed - Opened by seabbs about 1 year ago
- 1 comment
#464 - Improve contribution guide
Pull Request -
State: closed - Opened by jamesmbaazam about 1 year ago
#463 - Explain precompiled vignettes in contribution guide
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 2 comments
#462 - update versions in docker action
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#461 - attribute news item
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#460 - remove references to forecast_infections
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#459 - Remove examples with long runtimes
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 3 comments
#458 - workflow/options vignettes
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 3 comments
#457 - fix gt pmf dimensions for non-parametric model
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#456 - Prepare 1.4.0 CRAN release
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#455 - Improve deprecation
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#454 - avoid very narrow initial truncation distributions
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#453 - Update deprecated syntax for future rstan compatibility
Pull Request -
State: closed - Opened by andrjohns about 1 year ago
- 7 comments
#452 - make estimate_truncation return a dist_spec
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#451 - streamline S3 classes
Issue -
State: open - Opened by sbfnk about 1 year ago
- 6 comments
#450 - move prior weights to model arguments
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#449 - `estimate_truncation` should return a call to `dist_spec`
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#448 - use `delay_lp` in `estimate_truncation`
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 3 comments
#447 - Default values of `prior_weight`
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#446 - bug fix: make simulated delay mean unbounded
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 2 comments
#445 - move synthetic validation to macos
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#444 - Synthetic validation jobs fail
Issue -
State: closed - Opened by sbfnk about 1 year ago
#443 - Fix 442
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#442 - `estimate_secondary` fails with `prior_weight = 0`
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
Labels: bug
#441 - Issue 440: Added CSTE workshop as a case study
Pull Request -
State: closed - Opened by seabbs about 1 year ago
Labels: documentation
#440 - Add a link to new case studies/walkthroughs
Issue -
State: closed - Opened by seabbs about 1 year ago
Labels: documentation
#439 - update estimate truncation vignette
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#438 - allow snapshots shorter than trunc_max
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 7 comments
#437 - style change in response to lintr warnings
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#436 - fix regional summary in case of 0/0
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#435 - fix logmean bound
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 2 comments
#434 - Forecast error bands seem potentially implausible
Issue -
State: closed - Opened by dajmcdon about 1 year ago
- 3 comments
#433 - disable verbosity for failing chains
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 1 comment
#432 - don't defer negative binomial to Poisson at low levels of overdispersion
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 4 comments
#431 - Identifiability issues due to approximation to negative binomial
Issue -
State: closed - Opened by sbfnk about 1 year ago
#430 - Long example run times
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 7 comments
#429 - Failing samplers during tests
Issue -
State: closed - Opened by sbfnk about 1 year ago
#428 - Intermittent segfaults on Ubuntu
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 3 comments
#427 - downgrade StanHeaders
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#426 - qualify internal functions in tests
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#425 - update R CMD check action
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#424 - Action warnings
Issue -
State: closed - Opened by sbfnk about 1 year ago
#423 - EpiNow2 2.0.0 roadmap
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 4 comments
#422 - Tests fail with standard library loading
Issue -
State: closed - Opened by sbfnk about 1 year ago
#421 - Try older version
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
#420 - Failing tests on Windows
Issue -
State: closed - Opened by sbfnk about 1 year ago
- 10 comments
#419 - Revert "initialise vectors to zero"
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 2 comments
#418 - test on windows action
Pull Request -
State: closed - Opened by sbfnk about 1 year ago
- 2 comments
#416 - speed up generation of infections
Pull Request -
State: closed - Opened by sbfnk over 1 year ago
- 4 comments
#415 - Not for merging: benchmarking generate infections
Pull Request -
State: closed - Opened by sbfnk over 1 year ago
- 2 comments
#414 - Benchmarking skeleton
Pull Request -
State: closed - Opened by sbfnk over 1 year ago
#413 - shorten seeding time
Pull Request -
State: closed - Opened by sbfnk over 1 year ago
- 2 comments
#412 - Performance
Issue -
State: open - Opened by sbfnk over 1 year ago
#411 - Discretisation
Issue -
State: closed - Opened by sbfnk over 1 year ago
- 4 comments
#410 - Distribution max is really the length
Issue -
State: closed - Opened by sbfnk over 1 year ago