Ecosyste.ms: Issues

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GitHub / epiforecasts/EpiNow2 issues and pull requests

#822 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 1 day ago
Labels: documentation

#821 - Update total downloads badge

Pull Request - State: closed - Opened by seabbs 1 day ago - 3 comments

#820 - Update commits since badge

Pull Request - State: closed - Opened by seabbs 1 day ago

#819 - Update `CITATION.cff`

Pull Request - State: closed - Opened by github-actions[bot] 2 days ago

#818 - Update EpiNow2 vignette

Pull Request - State: closed - Opened by github-actions[bot] 3 days ago
Labels: documentation

#817 - add getting started to navbar

Pull Request - State: closed - Opened by sbfnk 3 days ago - 1 comment

#816 - Post cran check fixes

Pull Request - State: closed - Opened by sbfnk 3 days ago

#815 - CRAN v1.6.0 submission comments

Issue - State: closed - Opened by sbfnk 3 days ago

#814 - getting started vignette not showing up on pkgdown site

Issue - State: closed - Opened by sbfnk 3 days ago

#813 - Update estimate_infections_options vignette

Pull Request - State: closed - Opened by github-actions[bot] 3 days ago
Labels: documentation

#812 - Update epinow vignette

Pull Request - State: closed - Opened by github-actions[bot] 3 days ago
Labels: documentation

#811 - Update estimate_infections_workflow vignette

Pull Request - State: closed - Opened by github-actions[bot] 3 days ago
Labels: documentation

#810 - Update EpiNow2 vignette

Pull Request - State: closed - Opened by github-actions[bot] 3 days ago
Labels: documentation

#809 - dependencies: NA for render actions

Pull Request - State: closed - Opened by sbfnk 3 days ago - 2 comments

#808 - Issue 806: warn about nonparametric generation times

Pull Request - State: closed - Opened by sbfnk 4 days ago

#807 - Bump JamesIves/github-pages-deploy-action from 4.6.4 to 4.6.8

Pull Request - State: closed - Opened by dependabot[bot] 4 days ago
Labels: dependencies

#805 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 4 days ago
Labels: documentation

#804 - Update `CITATION.cff`

Pull Request - State: closed - Opened by github-actions[bot] 4 days ago

#803 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 4 days ago
Labels: documentation

#802 - use `tail` for check

Pull Request - State: closed - Opened by sbfnk 5 days ago

#801 - `check_sparse_pmf_tail` fails if `span` (default 5) is >= `length(pmf`

Issue - State: closed - Opened by sbfnk 5 days ago
Labels: bug

#800 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 5 days ago
Labels: documentation

#799 - Issue 793: Improve documentation for those specifying a non-parametric delay

Pull Request - State: closed - Opened by kaitejohnson 5 days ago - 10 comments

#798 - Move package depends to suggest

Pull Request - State: closed - Opened by sbfnk 7 days ago

#797 - get cmdstanr from github, rstan from can

Pull Request - State: closed - Opened by sbfnk 8 days ago

#796 - Dependencies

Issue - State: closed - Opened by sbfnk 8 days ago - 2 comments

#795 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 8 days ago
Labels: documentation

#794 - 1.6.0 release

Pull Request - State: closed - Opened by sbfnk 8 days ago

#793 - Improve documentation for those passing in a GI

Issue - State: closed - Opened by kaitejohnson 8 days ago - 1 comment

#792 - Add support for time-varying ascertainment

Issue - State: open - Opened by seabbs 10 days ago - 5 comments

#791 - Hex logo

Issue - State: open - Opened by sbfnk 11 days ago - 9 comments

#790 - Release EpiNow2 1.6.0

Issue - State: closed - Opened by sbfnk 12 days ago - 1 comment

#789 - update touchstone action to latest version

Pull Request - State: closed - Opened by sbfnk 12 days ago

#788 - Plot distributions with colour instead of line types

Pull Request - State: closed - Opened by jamesmbaazam 14 days ago

#787 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 15 days ago
Labels: documentation

#786 - Add colours to `dist_spec` plot

Issue - State: closed - Opened by sbfnk 15 days ago - 1 comment

#785 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 15 days ago
Labels: documentation

#784 - Plot order

Pull Request - State: closed - Opened by sbfnk 15 days ago - 2 comments

#783 - Order looks wrong in distribution plot

Issue - State: closed - Opened by sbfnk 15 days ago - 1 comment

#782 - install rstan from CRAN explicitly

Pull Request - State: closed - Opened by sbfnk 15 days ago - 3 comments

#781 - Plot distributions in workflow vignette

Pull Request - State: closed - Opened by jamesmbaazam 15 days ago - 4 comments
Labels: documentation

#780 - update `simulate_*` snapshots

Pull Request - State: closed - Opened by sbfnk 15 days ago

#779 - Make `rt=NULL` settings explicit

Pull Request - State: closed - Opened by jamesmbaazam 16 days ago - 1 comment
Labels: documentation

#778 - Add plots of distributions in workflow vignette

Issue - State: closed - Opened by jamesmbaazam 16 days ago
Labels: documentation

#777 - Improve internal handling of PMFs in stan

Issue - State: open - Opened by seabbs 18 days ago - 1 comment

#776 - Improve discretise

Issue - State: open - Opened by seabbs 18 days ago - 2 comments

#775 - install rstan from CRAN explicitly

Pull Request - State: closed - Opened by sbfnk 18 days ago

#774 - Conditionally throw message for `obs_opts(na = "missing")`

Pull Request - State: open - Opened by jamesmbaazam 19 days ago - 2 comments

#773 - Test a dummy changes for actions

Pull Request - State: closed - Opened by seabbs 19 days ago - 1 comment

#770 - update-citation action is missing libcurl4-openssl-dev

Issue - State: open - Opened by sbfnk 22 days ago - 1 comment

#769 - Update actions

Pull Request - State: closed - Opened by seabbs 22 days ago - 27 comments

#768 - Growth rate estimators

Issue - State: open - Opened by adrian-lison 22 days ago

#767 - Weekly random walk estimator no longer working as expected

Issue - State: closed - Opened by martinamcm 23 days ago - 11 comments

#766 - Bump peter-evans/create-pull-request from 6 to 7

Pull Request - State: closed - Opened by dependabot[bot] 25 days ago
Labels: dependencies

#765 - Locally stationary GPs

Issue - State: open - Opened by seabbs about 1 month ago - 1 comment

#764 - Bump JamesIves/github-pages-deploy-action from 4.6.3 to 4.6.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies

#763 - Update `CITATION.cff`

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago

#762 - Replace base R message/warning/stop with `{cli}`

Pull Request - State: closed - Opened by jamesmbaazam about 1 month ago - 2 comments
Labels: enhancement

#761 - Document/surface what settings are applied when `rt = NULL`.

Issue - State: closed - Opened by jamesmbaazam about 1 month ago - 2 comments

#760 - Optimised Matern kernels

Issue - State: open - Opened by seabbs about 1 month ago
Labels: enhancement

#759 - ARMA spectral density

Issue - State: open - Opened by seabbs about 1 month ago - 1 comment
Labels: enhancement

#758 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago
Labels: documentation

#757 - Vectorise GPs

Issue - State: closed - Opened by seabbs about 1 month ago - 5 comments

#756 - Initialise models with approximate algorithms

Issue - State: open - Opened by jamesmbaazam about 1 month ago

#755 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago
Labels: documentation

#754 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago
Labels: documentation

#753 - README updates: suggest `cmdstanr` + nowcasting course resource

Pull Request - State: closed - Opened by jamesmbaazam about 1 month ago

#752 - Check tail of nonparametric PMFs

Pull Request - State: closed - Opened by jamesmbaazam about 1 month ago

#751 - Remove fixed lower bound samples in `dist_fit()`

Pull Request - State: closed - Opened by jamesmbaazam about 1 month ago - 3 comments

#750 - Skip checking parameters of nonparametric distributions

Pull Request - State: closed - Opened by jamesmbaazam about 2 months ago

#749 - NonParametric distributions fail `check_stan_delays()` run

Issue - State: closed - Opened by jamesmbaazam about 2 months ago

#748 - Use multiplier to make rw non-centred

Pull Request - State: closed - Opened by seabbs about 2 months ago - 3 comments

#747 - Switching to broadcasting random walk

Pull Request - State: closed - Opened by seabbs about 2 months ago - 6 comments

#746 - Use broadcasting vs loop in day of week

Pull Request - State: closed - Opened by seabbs about 2 months ago - 4 comments

#745 - Optimise convolutions

Pull Request - State: closed - Opened by seabbs about 2 months ago - 10 comments

#744 - Add render workflows

Pull Request - State: closed - Opened by seabbs about 2 months ago

#743 - Clean up spurious pngs

Pull Request - State: closed - Opened by seabbs about 2 months ago

#742 - Issue 757: Vectorise GP stan code

Pull Request - State: closed - Opened by seabbs about 2 months ago - 18 comments

#741 - Additional GP kernels

Pull Request - State: closed - Opened by sbfnk about 2 months ago - 4 comments

#740 - Document all stan code

Issue - State: open - Opened by jamesmbaazam about 2 months ago - 1 comment

#739 - Add a warning when the length of delays are longer than the supplied data

Issue - State: open - Opened by seabbs about 2 months ago
Labels: enhancement, good first issue

#738 - Add a warning when PMFs are very sparse in the tails

Issue - State: closed - Opened by seabbs about 2 months ago
Labels: enhancement, good first issue

#736 - Issue 735: Fix truncation slicing when t < truncation

Pull Request - State: closed - Opened by seabbs about 2 months ago - 13 comments

#735 - Truncation adjustment does not work as expected if truncation vector is too long

Issue - State: closed - Opened by kgostic about 2 months ago - 5 comments
Labels: bug, high priority

#734 - tolerance -> cdf_cutoff

Pull Request - State: closed - Opened by sbfnk 2 months ago - 1 comment

#733 - fix_dist -> fix_parameters

Pull Request - State: closed - Opened by sbfnk 2 months ago - 3 comments

#732 - Add actions to precompile long running vignettes

Issue - State: closed - Opened by jamesmbaazam 2 months ago - 5 comments

#731 - add `merge_group` to required checks

Pull Request - State: closed - Opened by sbfnk 2 months ago

#729 - Make argument defaults explicit where possible

Pull Request - State: closed - Opened by Bisaloo 2 months ago

#728 - `pathfinder` fails for large case reports

Issue - State: open - Opened by jamesmbaazam 2 months ago - 4 comments

#727 - Overflow issues with `neg_binomial_2_rng` in variational bayes method

Issue - State: closed - Opened by jamesmbaazam 2 months ago - 3 comments

#726 - Considerations for the responsible use of GitHub Actions

Issue - State: closed - Opened by jamesmbaazam 3 months ago - 10 comments

#724 - Allow specifying tolerance at to `dist_spec` upon definition

Pull Request - State: closed - Opened by sbfnk 3 months ago - 7 comments

#723 - Update `CITATION.cff`

Pull Request - State: closed - Opened by github-actions[bot] 3 months ago

#722 - coverage on macos

Pull Request - State: closed - Opened by sbfnk 3 months ago