Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / epiforecasts/EpiNow2 issues and pull requests

#700 - Fix deprecation errors by replacing `reported_cases` with `data`

Pull Request - State: open - Opened by jamesmbaazam 16 days ago - 1 comment

#699 - Dots are only passed to rstan sampling here

Pull Request - State: open - Opened by jamesmbaazam 16 days ago

#698 - Shorten `generation_time_opts()` to `gt_opts()` as alias

Pull Request - State: open - Opened by jamesmbaazam 16 days ago - 1 comment

#697 - Bump docker/build-push-action from 5 to 6

Pull Request - State: open - Opened by dependabot[bot] 18 days ago
Labels: dependencies

#695 - Add vignette providing options for speeding up the vignette

Pull Request - State: open - Opened by jamesmbaazam 22 days ago - 1 comment

#693 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 28 days ago
Labels: documentation

#692 - remove url check

Pull Request - State: closed - Opened by sbfnk 28 days ago - 1 comment

#690 - Update README

Pull Request - State: closed - Opened by github-actions[bot] 28 days ago
Labels: documentation

#689 - Failed installation, could it be due to a bug?

Issue - State: closed - Opened by nlinton 29 days ago - 2 comments

#688 - Return `epinow()`'s "timing" output as `<difftime>`

Pull Request - State: closed - Opened by jamesmbaazam about 1 month ago

#687 - `epinow()`'s "timing" output should include units

Issue - State: closed - Opened by jamesmbaazam about 1 month ago - 2 comments

#686 - Should `rt_opts()` accept `NULL`?

Issue - State: closed - Opened by jamesmbaazam about 1 month ago - 3 comments

#684 - Export epinow2_cmdstan_model() function

Pull Request - State: closed - Opened by adamkucharski about 1 month ago - 2 comments

#683 - Bump peter-evans/create-pull-request from 5 to 6

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#682 - Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#681 - `epinow2_cmdstan_model()` should be exported

Issue - State: closed - Opened by sbfnk about 2 months ago

#680 - bring back allcontributors workflow

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#679 - Update `CITATION.cff`

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago

#678 - 1.5.2 Release

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#676 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#675 - deactivate allcontributors workflow

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#674 - Update `CITATION.cff`

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago

#673 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#672 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#671 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#670 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#669 - Update citation to use system date if not specified in DESCRIPTION

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#668 - CITATION file uses unset `meta$Date`

Issue - State: closed - Opened by sbfnk about 2 months ago - 10 comments

#667 - advance deprecation cycle

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#666 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#665 - setting tolerance instead of max in delay options doesn't work

Issue - State: open - Opened by sbfnk about 2 months ago

#664 - allcontributors not working properly

Issue - State: closed - Opened by sbfnk about 2 months ago

#663 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#662 - don't write executable files to `inst/stan`

Issue - State: closed - Opened by sbfnk about 2 months ago

#661 - <objects> need to be backtick escaped

Issue - State: closed - Opened by sbfnk about 2 months ago

#660 - figure dir in vignettes directory

Issue - State: closed - Opened by sbfnk about 2 months ago

#659 - Relative links in README

Issue - State: closed - Opened by sbfnk about 2 months ago - 2 comments

#658 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#657 - Update README

Pull Request - State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation

#656 - single commit on gh pages

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#655 - use cmdstanr beta in actions

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#654 - pathfinder test currently failing

Issue - State: closed - Opened by sbfnk about 2 months ago

#653 - 1.5.0 release PR

Pull Request - State: closed - Opened by sbfnk about 2 months ago - 1 comment

#652 - Release EpiNow2 1.5.0

Issue - State: closed - Opened by sbfnk about 2 months ago - 3 comments

#651 - Change maintainer

Pull Request - State: closed - Opened by sbfnk about 2 months ago

#650 - Use `lifecycle::is_present()` for dealing with deprecated arguments

Issue - State: closed - Opened by jamesmbaazam 2 months ago - 1 comment

#649 - Pre-release cleanup

Pull Request - State: closed - Opened by sbfnk 2 months ago

#648 - rename argument silent -> strict

Pull Request - State: closed - Opened by sbfnk 2 months ago

#647 - rename `silent` argument

Issue - State: closed - Opened by sbfnk 2 months ago

#646 - Get parameters

Pull Request - State: closed - Opened by sbfnk 2 months ago

#645 - interface to `dist_spec` parameters

Issue - State: closed - Opened by sbfnk 2 months ago

#644 - Clarify propagating truncation uncertainty

Pull Request - State: closed - Opened by jamesmbaazam 2 months ago

#643 - accumulate for observed reports

Pull Request - State: open - Opened by sbfnk 2 months ago

#642 - tidy up functions to get stan models

Pull Request - State: closed - Opened by sbfnk 2 months ago - 1 comment

#641 - No way to pass options to `cmdstanr::cmdstan_model`

Issue - State: closed - Opened by sbfnk 2 months ago - 1 comment
Labels: bug

#640 - Reported cases does not reflect the setting of `accumulate`

Issue - State: open - Opened by sbfnk 2 months ago - 2 comments
Labels: bug

#639 - Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#637 - update link to guide on how to install Rtools on Windows

Issue - State: open - Opened by avallecam 3 months ago - 3 comments

#634 - remove setting of rtools version

Pull Request - State: closed - Opened by sbfnk 3 months ago - 2 comments

#632 - Update DESCRIPTION - remove styler

Pull Request - State: closed - Opened by seabbs 3 months ago

#631 - Remove {styler} dependency

Issue - State: closed - Opened by lorenzwalthert 3 months ago - 2 comments

#630 - Weight delays separately

Pull Request - State: closed - Opened by sbfnk 3 months ago

#629 - Vignette on approximations and speedups

Issue - State: open - Opened by sbfnk 3 months ago - 5 comments

#628 - re-create `example_truncated` data set

Pull Request - State: closed - Opened by sbfnk 3 months ago

#627 - improve handling of seeding time in `simulate_infections()`

Pull Request - State: closed - Opened by sbfnk 3 months ago - 5 comments

#626 - results of `simulate_infections` starts with unexpected number of infections

Issue - State: closed - Opened by sbfnk 3 months ago - 1 comment

#625 - New maintainer

Issue - State: closed - Opened by seabbs 4 months ago - 6 comments

#624 - Add laplace and pathfinder approximate inference

Pull Request - State: closed - Opened by sbfnk 4 months ago - 5 comments

#623 - Warn about default generation time options

Pull Request - State: closed - Opened by sbfnk 4 months ago

#622 - Default choices

Pull Request - State: closed - Opened by sbfnk 4 months ago

#621 - Update wording of labels

Pull Request - State: closed - Opened by sbfnk 4 months ago - 1 comment

#620 - Homepage vs README

Issue - State: closed - Opened by jamesmbaazam 4 months ago - 2 comments
Labels: documentation, question, wontfix

#619 - Fix wrong call to vignette() in README

Pull Request - State: closed - Opened by jamesmbaazam 4 months ago

#618 - Return forecasts for easy processing with `scoringutils`

Issue - State: open - Opened by sbfnk 4 months ago - 2 comments

#617 - Fix relative links in README

Pull Request - State: open - Opened by jamesmbaazam 4 months ago

#616 - cmdstanr benchmarking

Pull Request - State: closed - Opened by sbfnk 4 months ago - 9 comments

#615 - `estimate_secondary` doesn't use seeding time

Issue - State: closed - Opened by sbfnk 4 months ago - 1 comment

#614 - add within-model profiling

Pull Request - State: closed - Opened by sbfnk 4 months ago - 4 comments

#613 - Prior(s) for R

Issue - State: closed - Opened by sbfnk 4 months ago - 2 comments
Labels: bug

#612 - add 1 before fitting final week when creating shifted cases

Pull Request - State: closed - Opened by sbfnk 4 months ago - 1 comment

#610 - Directly calculated growth

Pull Request - State: closed - Opened by sbfnk 4 months ago - 4 comments

#609 - NOT FOR MERGING: use organisation PAT instead of github token

Pull Request - State: closed - Opened by sbfnk 4 months ago

#606 - Add `preprocessing_opts()`

Issue - State: open - Opened by jamesmbaazam 4 months ago

#604 - Remove reporting templates

Pull Request - State: closed - Opened by jamesmbaazam 4 months ago - 1 comment

#603 - use inv_square instead of 1/pow(..., 2)

Pull Request - State: closed - Opened by sbfnk 4 months ago - 1 comment

#602 - precompile: loop over orig files

Pull Request - State: closed - Opened by sbfnk 4 months ago

#601 - fold secondary options into observation model

Issue - State: open - Opened by sbfnk 4 months ago - 1 comment

#600 - Time-varying parameters (i.e. conversion to latent variables)

Issue - State: open - Opened by sbfnk 4 months ago - 2 comments

#599 - Architecture diagram for the package

Issue - State: open - Opened by jamesmbaazam 4 months ago

#598 - streamline deprecation warnings

Issue - State: closed - Opened by sbfnk 4 months ago - 1 comment

#596 - Links in package README not going to website

Issue - State: open - Opened by athowes 4 months ago - 2 comments