Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / epiforecasts/EpiNow2 issues and pull requests
#700 - Fix deprecation errors by replacing `reported_cases` with `data`
Pull Request -
State: open - Opened by jamesmbaazam 16 days ago
- 1 comment
#699 - Dots are only passed to rstan sampling here
Pull Request -
State: open - Opened by jamesmbaazam 16 days ago
#698 - Shorten `generation_time_opts()` to `gt_opts()` as alias
Pull Request -
State: open - Opened by jamesmbaazam 16 days ago
- 1 comment
#697 - Bump docker/build-push-action from 5 to 6
Pull Request -
State: open - Opened by dependabot[bot] 18 days ago
Labels: dependencies
#696 - Update `stan_sampling_opts()` documentation of `...`
Issue -
State: open - Opened by jamesmbaazam 18 days ago
#695 - Add vignette providing options for speeding up the vignette
Pull Request -
State: open - Opened by jamesmbaazam 22 days ago
- 1 comment
#694 - add check for a finite maximum `max` to the new distribution inferface functions
Issue -
State: closed - Opened by avallecam 28 days ago
- 1 comment
#693 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] 28 days ago
Labels: documentation
#692 - remove url check
Pull Request -
State: closed - Opened by sbfnk 28 days ago
- 1 comment
#691 - allcontributors still runs into errors, presumably too many requests when checking URLs
Issue -
State: closed - Opened by sbfnk 28 days ago
#690 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] 28 days ago
Labels: documentation
#689 - Failed installation, could it be due to a bug?
Issue -
State: closed - Opened by nlinton 29 days ago
- 2 comments
#688 - Return `epinow()`'s "timing" output as `<difftime>`
Pull Request -
State: closed - Opened by jamesmbaazam about 1 month ago
#687 - `epinow()`'s "timing" output should include units
Issue -
State: closed - Opened by jamesmbaazam about 1 month ago
- 2 comments
#686 - Should `rt_opts()` accept `NULL`?
Issue -
State: closed - Opened by jamesmbaazam about 1 month ago
- 3 comments
#684 - Export epinow2_cmdstan_model() function
Pull Request -
State: closed - Opened by adamkucharski about 1 month ago
- 2 comments
#683 - Bump peter-evans/create-pull-request from 5 to 6
Pull Request -
State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies
#682 - Bump JamesIves/github-pages-deploy-action from 4.6.0 to 4.6.1
Pull Request -
State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies
#681 - `epinow2_cmdstan_model()` should be exported
Issue -
State: closed - Opened by sbfnk about 2 months ago
#680 - bring back allcontributors workflow
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#679 - Update `CITATION.cff`
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
#678 - 1.5.2 Release
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#676 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#675 - deactivate allcontributors workflow
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#674 - Update `CITATION.cff`
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
#673 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#672 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#671 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#670 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#669 - Update citation to use system date if not specified in DESCRIPTION
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#668 - CITATION file uses unset `meta$Date`
Issue -
State: closed - Opened by sbfnk about 2 months ago
- 10 comments
#667 - advance deprecation cycle
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#666 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#665 - setting tolerance instead of max in delay options doesn't work
Issue -
State: open - Opened by sbfnk about 2 months ago
#664 - allcontributors not working properly
Issue -
State: closed - Opened by sbfnk about 2 months ago
#663 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#662 - don't write executable files to `inst/stan`
Issue -
State: closed - Opened by sbfnk about 2 months ago
#661 - <objects> need to be backtick escaped
Issue -
State: closed - Opened by sbfnk about 2 months ago
#660 - figure dir in vignettes directory
Issue -
State: closed - Opened by sbfnk about 2 months ago
#659 - Relative links in README
Issue -
State: closed - Opened by sbfnk about 2 months ago
- 2 comments
#658 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#657 - Update README
Pull Request -
State: closed - Opened by github-actions[bot] about 2 months ago
Labels: documentation
#656 - single commit on gh pages
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#655 - use cmdstanr beta in actions
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#654 - pathfinder test currently failing
Issue -
State: closed - Opened by sbfnk about 2 months ago
#653 - 1.5.0 release PR
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
- 1 comment
#652 - Release EpiNow2 1.5.0
Issue -
State: closed - Opened by sbfnk about 2 months ago
- 3 comments
#651 - Change maintainer
Pull Request -
State: closed - Opened by sbfnk about 2 months ago
#650 - Use `lifecycle::is_present()` for dealing with deprecated arguments
Issue -
State: closed - Opened by jamesmbaazam 2 months ago
- 1 comment
#649 - Pre-release cleanup
Pull Request -
State: closed - Opened by sbfnk 2 months ago
#648 - rename argument silent -> strict
Pull Request -
State: closed - Opened by sbfnk 2 months ago
#647 - rename `silent` argument
Issue -
State: closed - Opened by sbfnk 2 months ago
#646 - Get parameters
Pull Request -
State: closed - Opened by sbfnk 2 months ago
#645 - interface to `dist_spec` parameters
Issue -
State: closed - Opened by sbfnk 2 months ago
#644 - Clarify propagating truncation uncertainty
Pull Request -
State: closed - Opened by jamesmbaazam 2 months ago
#643 - accumulate for observed reports
Pull Request -
State: open - Opened by sbfnk 2 months ago
#642 - tidy up functions to get stan models
Pull Request -
State: closed - Opened by sbfnk 2 months ago
- 1 comment
#641 - No way to pass options to `cmdstanr::cmdstan_model`
Issue -
State: closed - Opened by sbfnk 2 months ago
- 1 comment
Labels: bug
#640 - Reported cases does not reflect the setting of `accumulate`
Issue -
State: open - Opened by sbfnk 2 months ago
- 2 comments
Labels: bug
#639 - Bump JamesIves/github-pages-deploy-action from 4.5.0 to 4.6.0
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies
#638 - Rename and deprecate differing data argument names in favour of `data`
Pull Request -
State: closed - Opened by jamesmbaazam 2 months ago
#637 - update link to guide on how to install Rtools on Windows
Issue -
State: open - Opened by avallecam 3 months ago
- 3 comments
#634 - remove setting of rtools version
Pull Request -
State: closed - Opened by sbfnk 3 months ago
- 2 comments
#632 - Update DESCRIPTION - remove styler
Pull Request -
State: closed - Opened by seabbs 3 months ago
#631 - Remove {styler} dependency
Issue -
State: closed - Opened by lorenzwalthert 3 months ago
- 2 comments
#630 - Weight delays separately
Pull Request -
State: closed - Opened by sbfnk 3 months ago
#629 - Vignette on approximations and speedups
Issue -
State: open - Opened by sbfnk 3 months ago
- 5 comments
#628 - re-create `example_truncated` data set
Pull Request -
State: closed - Opened by sbfnk 3 months ago
#627 - improve handling of seeding time in `simulate_infections()`
Pull Request -
State: closed - Opened by sbfnk 3 months ago
- 5 comments
#626 - results of `simulate_infections` starts with unexpected number of infections
Issue -
State: closed - Opened by sbfnk 3 months ago
- 1 comment
#625 - New maintainer
Issue -
State: closed - Opened by seabbs 4 months ago
- 6 comments
#624 - Add laplace and pathfinder approximate inference
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 5 comments
#623 - Warn about default generation time options
Pull Request -
State: closed - Opened by sbfnk 4 months ago
#622 - Default choices
Pull Request -
State: closed - Opened by sbfnk 4 months ago
#621 - Update wording of labels
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 1 comment
#620 - Homepage vs README
Issue -
State: closed - Opened by jamesmbaazam 4 months ago
- 2 comments
Labels: documentation, question, wontfix
#619 - Fix wrong call to vignette() in README
Pull Request -
State: closed - Opened by jamesmbaazam 4 months ago
#618 - Return forecasts for easy processing with `scoringutils`
Issue -
State: open - Opened by sbfnk 4 months ago
- 2 comments
#617 - Fix relative links in README
Pull Request -
State: open - Opened by jamesmbaazam 4 months ago
#616 - cmdstanr benchmarking
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 9 comments
#615 - `estimate_secondary` doesn't use seeding time
Issue -
State: closed - Opened by sbfnk 4 months ago
- 1 comment
#614 - add within-model profiling
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 4 comments
#613 - Prior(s) for R
Issue -
State: closed - Opened by sbfnk 4 months ago
- 2 comments
Labels: bug
#612 - add 1 before fitting final week when creating shifted cases
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 1 comment
#611 - Non-mechanistic model with shifted cases can create explosive exponential growth
Issue -
State: closed - Opened by sbfnk 4 months ago
Labels: bug
#610 - Directly calculated growth
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 4 comments
#609 - NOT FOR MERGING: use organisation PAT instead of github token
Pull Request -
State: closed - Opened by sbfnk 4 months ago
#608 - Add `filter_leading_zeros` and `zero_threshold` to `estimate_secondary()` and `estimate_truncation()`
Pull Request -
State: closed - Opened by jamesmbaazam 4 months ago
- 2 comments
#607 - Deprecate `obs`, `reports`, and `reported_cases` in favour of `data`
Issue -
State: closed - Opened by jamesmbaazam 4 months ago
#606 - Add `preprocessing_opts()`
Issue -
State: open - Opened by jamesmbaazam 4 months ago
#605 - Add `filter_leading_zeros` and `zero_threshold` arguments to `estimate_secondary()` and `estimate_truncation()`
Issue -
State: closed - Opened by jamesmbaazam 4 months ago
#604 - Remove reporting templates
Pull Request -
State: closed - Opened by jamesmbaazam 4 months ago
- 1 comment
#603 - use inv_square instead of 1/pow(..., 2)
Pull Request -
State: closed - Opened by sbfnk 4 months ago
- 1 comment
#602 - precompile: loop over orig files
Pull Request -
State: closed - Opened by sbfnk 4 months ago
#601 - fold secondary options into observation model
Issue -
State: open - Opened by sbfnk 4 months ago
- 1 comment
#600 - Time-varying parameters (i.e. conversion to latent variables)
Issue -
State: open - Opened by sbfnk 4 months ago
- 2 comments
#599 - Architecture diagram for the package
Issue -
State: open - Opened by jamesmbaazam 4 months ago
#598 - streamline deprecation warnings
Issue -
State: closed - Opened by sbfnk 4 months ago
- 1 comment
#597 - Deprecate `adjust_infection_to_report()`, `report_cases()`, and `sample_approx_dist()`
Pull Request -
State: closed - Opened by jamesmbaazam 4 months ago
- 4 comments
#596 - Links in package README not going to website
Issue -
State: open - Opened by athowes 4 months ago
- 2 comments