Ecosyste.ms: Issues

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GitHub / epi2me-labs/wf-16s issues and pull requests

#29 - BAM files in the no_host_bam folder

Issue - State: closed - Opened by sachiwije 4 months ago - 1 comment
Labels: question

#28 - Ways to improve minimap classification?

Issue - State: closed - Opened by osvatic 5 months ago - 3 comments
Labels: question

#26 - minimap_pipeline:makeReport (1) error with custom database

Issue - State: closed - Opened by jadeaver 6 months ago - 8 comments

#25 - minimap_pipeline:makeReport (1) error with custom database

Issue - State: closed - Opened by jadeaver 6 months ago - 2 comments
Labels: question

#24 - No "species" level information in the "Lineages" section

Issue - State: closed - Opened by drabitoris 6 months ago - 5 comments
Labels: question

#23 - Instead of taxonomic assignment to "Unknown", classifying to the next highest taxonomic level

Issue - State: closed - Opened by el3rin 6 months ago - 4 comments
Labels: question

#22 - How to obtain a phylogenic tree

Issue - State: closed - Opened by CamillePhilippeSCI 7 months ago - 3 comments
Labels: question

#21 - (Singularity) Container missing dependencies

Issue - State: closed - Opened by marchoeppner 7 months ago - 7 comments

#20 - Direct additional report tables to output directory

Issue - State: closed - Opened by aliciamrich 7 months ago - 2 comments
Labels: enhancement

#19 - How to pull a previous version of the workflow?

Issue - State: closed - Opened by irc47 8 months ago - 2 comments
Labels: question

#18 - Only 96 BC at the time

Issue - State: closed - Opened by CamillePhilippeSCI 8 months ago - 9 comments
Labels: help wanted, question

#17 - prepare_database fails

Issue - State: closed - Opened by hanburglarbabel 9 months ago - 2 comments

#16 - Error creating report in Kraken

Issue - State: closed - Opened by rachelhawrit 9 months ago - 3 comments

#14 - Support for database stored on a network drive

Issue - State: closed - Opened by nikelau 10 months ago - 1 comment

#13 - [Demo] ERROR ~ Error executing process > 'minimap_pipeline:makeReport (1)'

Issue - State: closed - Opened by nikelau 10 months ago - 1 comment

#12 - Empty file for workflow (even on demo)

Issue - State: closed - Opened by nikelau 10 months ago - 2 comments

#11 - Error making html report

Issue - State: closed - Opened by CGD-Helix 10 months ago - 3 comments

#10 - Error 137 (out of memory?) during report generation

Issue - State: closed - Opened by osilander 11 months ago - 3 comments

#9 - Update README.md

Pull Request - State: closed - Opened by aleimba 11 months ago - 2 comments

#8 - html report generation errors out when there are 0 classified reads

Issue - State: closed - Opened by osilander 12 months ago - 3 comments

#7 - option to specify output directory other than config file

Issue - State: closed - Opened by osilander 12 months ago

#6 - Error when making reports

Issue - State: closed - Opened by yanchunzhang about 1 year ago - 7 comments

#5 - Error when making report

Issue - State: closed - Opened by yanchunzhang about 1 year ago - 1 comment
Labels: question

#4 - Grouping of samples

Issue - State: closed - Opened by joe0750 about 1 year ago - 4 comments
Labels: question

#3 - Report format

Issue - State: closed - Opened by llk578496 about 1 year ago - 8 comments
Labels: question

#2 - running with test_data

Issue - State: closed - Opened by HannahBenisty over 1 year ago - 7 comments

#1 - running test data

Issue - State: closed - Opened by HannahBenisty over 1 year ago - 1 comment
Labels: question