Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / emmanuelparadis/pegas issues and pull requests
#90 - Ops.factor(left, right) error
Issue -
State: open - Opened by SimeoneCA 5 months ago
#89 - Subset a haplotype object based on names?
Issue -
State: open - Opened by ChrisK1988 6 months ago
- 2 comments
#88 - Issue with replot() on Windows
Issue -
State: closed - Opened by Chatchamew 7 months ago
- 2 comments
#87 - Duplicated Sequence for MJN
Issue -
State: open - Opened by Chatchamew 7 months ago
- 11 comments
#86 - default number of iterations in rmst() might not be enough
Issue -
State: closed - Opened by emmanuelparadis 8 months ago
- 1 comment
Labels: enhancement
#85 - rmst on a list of distance matrices
Issue -
State: closed - Opened by naurasd 8 months ago
- 6 comments
#84 - Introduce threshold parameter for show.mutation
Issue -
State: open - Opened by naurasd 12 months ago
Labels: enhancement
#83 - Changing node coordinates changes node scale
Issue -
State: closed - Opened by naurasd about 1 year ago
- 2 comments
#82 - Positioning of haplotypes in network different everytime the plot is re-done
Issue -
State: closed - Opened by naurasd about 1 year ago
- 6 comments
#81 - Alternative links - placement of mutation ticks
Issue -
State: closed - Opened by naurasd about 1 year ago
- 7 comments
#80 - Plotting labels next to haplotypes, not onto them
Issue -
State: closed - Opened by naurasd about 1 year ago
- 3 comments
#79 - Error Reading In Fasta Data
Issue -
State: closed - Opened by sbabbbie about 1 year ago
- 1 comment
#78 - [pegas 1.2] Median Joining network with wrong number of mutations ?
Issue -
State: closed - Opened by ColineRoyaux about 1 year ago
- 2 comments
#77 - possible error in tajima.test that causes miscalculation of the statistic
Issue -
State: closed - Opened by omys-omics over 1 year ago
- 2 comments
Labels: bug
#76 - Creating Median Joining Networks
Issue -
State: closed - Opened by leshonlee over 1 year ago
- 3 comments
Labels: question
#75 - How to get the same result as DnaSp in haplotype extraction?
Issue -
State: closed - Opened by jaum20 almost 2 years ago
- 10 comments
#74 - Problems with replot function
Issue -
State: closed - Opened by Juanphg about 2 years ago
- 2 comments
#73 - Color the pies of haplonet
Issue -
State: closed - Opened by QianGuoPKU about 2 years ago
- 4 comments
#72 - The network algorithm in Haplonet function
Issue -
State: closed - Opened by QianGuoPKU over 2 years ago
- 2 comments
#71 - Two haplotypes are plotted with the same colour if bg is specified
Issue -
State: closed - Opened by vmkalbskopf over 2 years ago
- 11 comments
#70 - Known haplotype frequencies
Issue -
State: closed - Opened by Timzladen over 2 years ago
- 1 comment
#69 - Results from MMD Function
Issue -
State: closed - Opened by S-Majoros over 2 years ago
- 2 comments
#68 - Problem with the display of pie chart's colors with haplotype network median joining
Issue -
State: closed - Opened by ColineRoyaux over 2 years ago
- 6 comments
#67 - Computing the frequencies of haplotypes for each population from "loci" objects
Issue -
State: closed - Opened by awshort over 2 years ago
- 2 comments
#66 - Extracting the frequencies from a "haplotype.loci" object
Issue -
State: closed - Opened by awshort over 2 years ago
- 2 comments
#65 - Adding the pairwise deletion argument to the dist.asd () function
Issue -
State: closed - Opened by DenisGoryunov over 2 years ago
- 3 comments
#64 - Updated vcf conflicts with cache
Issue -
State: closed - Opened by jnrunge almost 3 years ago
- 2 comments
#63 - Problem ploting haplonet with mutations as dots (show.mutation=2)
Issue -
State: closed - Opened by Juanphg almost 3 years ago
- 2 comments
#62 - Make adegenet a Suggests package?
Issue -
State: closed - Opened by privefl almost 3 years ago
- 3 comments
#61 - Issue with identifying haplotypes
Issue -
State: closed - Opened by mkiravn about 3 years ago
- 2 comments
#60 - error with reading two rows per individual in "haplotype"
Issue -
State: closed - Opened by aherbotany about 3 years ago
- 9 comments
#59 - Error in .labelSegmentsHaploNet(xx, yy, altlink[s, 1:2, drop = FALSE], : argument "scale.ratio" is missing, with no default
Issue -
State: closed - Opened by sheinasim about 3 years ago
- 3 comments
#58 - Issue with reading in VCF files
Issue -
State: closed - Opened by mkiravn over 3 years ago
- 15 comments
#57 - Warning issued by amova within pegas
Issue -
State: closed - Opened by green-striped-gecko over 3 years ago
- 3 comments
#56 - hw.test in pegas 1.0 and earlier failing many markers. EDIT: Markers were missing alleles present in pop.
Issue -
State: closed - Opened by ptcooper over 3 years ago
- 6 comments
#55 - Current haplotype.r version won't plot other pie colors
Issue -
State: closed - Opened by cajwalsh over 3 years ago
- 6 comments
#54 - Add your repository to r-universe.dev?
Issue -
State: closed - Opened by zkamvar over 3 years ago
#53 - Running haplotype() on an empty dna object
Issue -
State: closed - Opened by kweitemier over 3 years ago
- 2 comments
#52 - Fst now runs in case of single population (fixes #51)
Pull Request -
State: closed - Opened by courtiol over 3 years ago
- 1 comment
#51 - Fst() does not run in case of a single population
Issue -
State: closed - Opened by courtiol over 3 years ago
#50 - LD2 fails
Issue -
State: closed - Opened by stuartwillis about 4 years ago
- 3 comments
#49 - Bug in FST calculation
Issue -
State: closed - Opened by Ahhgust about 4 years ago
- 2 comments
#48 - Fixing node scale across pegas haplotype network plots
Issue -
State: closed - Opened by ksw9 about 4 years ago
- 5 comments
#47 - Testing HWE for X-chromosomal markers
Issue -
State: open - Opened by cloudred20 over 4 years ago
- 1 comment
Labels: enhancement
#46 - Get differences between haplotypes
Issue -
State: closed - Opened by jcgrenier over 4 years ago
- 4 comments
#45 - Missing data Handling
Issue -
State: closed - Opened by jcgrenier over 4 years ago
- 2 comments
#44 - Problems with LDScan
Issue -
State: closed - Opened by nschan almost 5 years ago
- 6 comments
#43 - Haplotype mutation ticks in center of links
Issue -
State: closed - Opened by mhoban about 5 years ago
- 4 comments
#42 - MMD documentation typo help?
Issue -
State: closed - Opened by aeberardi over 5 years ago
- 1 comment
#41 - drop = FALSE in ".[loci"creates issues with other function(s)
Issue -
State: closed - Opened by courtiol over 5 years ago
- 1 comment
#40 - read.loci() silently deleting samples on import
Issue -
State: closed - Opened by emmanuelparadis over 5 years ago
- 5 comments
#39 - some functions not installed
Issue -
State: closed - Opened by willyard almost 6 years ago
- 1 comment
#38 - All NaN from Fst function
Issue -
State: closed - Opened by darencard about 6 years ago
- 2 comments
#37 - Fix loci subset method dispatch
Pull Request -
State: closed - Opened by zkamvar about 6 years ago
- 1 comment
#36 - hw.test fails if a locus contains all missing data
Issue -
State: closed - Opened by zkamvar about 6 years ago
- 8 comments
#35 - crash - address (nil), cause 'memory not mapped' on opensuse tumbleweed
Issue -
State: closed - Opened by zjons over 6 years ago
- 1 comment
#34 - created write.amova
Pull Request -
State: closed - Opened by knausb over 6 years ago
- 3 comments
#33 - First P value missing for hierarchical AMOVA with 2 or more tiers [new]
Issue -
State: closed - Opened by ghost over 6 years ago
- 2 comments
#32 - Plot opens graphics output but never plots anything, just sits there
Issue -
State: closed - Opened by DiDeoxy over 6 years ago
- 1 comment
#31 - Add new function getPhi()
Pull Request -
State: closed - Opened by zkamvar over 6 years ago
- 1 comment
#30 - problem with SNP without polymorphism from VCF
Issue -
State: closed - Opened by frederic-michaud over 6 years ago
- 6 comments
#29 - Expanding the file name of vcf file to be read to avoid segfault.
Pull Request -
State: closed - Opened by frederic-michaud over 6 years ago
- 1 comment
#28 - Session crash when loading vcf file with ~
Issue -
State: closed - Opened by frederic-michaud over 6 years ago
- 2 comments
#27 - add missing comma
Pull Request -
State: closed - Opened by zkamvar over 6 years ago
- 2 comments
#26 - fix levels for print.amova
Pull Request -
State: closed - Opened by zkamvar almost 7 years ago
- 2 comments
#25 - Feature request: Calculate phi statistics for AMOVA
Issue -
State: closed - Opened by zkamvar almost 7 years ago
- 5 comments
#24 - pop function exported in hw.test?
Issue -
State: closed - Opened by EricArcher almost 7 years ago
- 5 comments
#23 - unexpected behavior when trying to install pegas with githubinstall()
Issue -
State: closed - Opened by vinsondoyle over 7 years ago
- 3 comments
#22 - Error when using haploNet(h) on Fasta file.
Issue -
State: closed - Opened by jorgeamaya over 7 years ago
- 1 comment
#21 - loci2genind and ploidy level?
Issue -
State: closed - Opened by jgx65 about 8 years ago
- 3 comments
#20 - Problem with missing values in loci2genind
Issue -
State: closed - Opened by mstetter about 8 years ago
- 3 comments
#19 - Absent sigma/p value with multi-level amova plus warnings
Issue -
State: closed - Opened by elizeng over 8 years ago
- 1 comment
#18 - P values absent in some AMOVA runs with hierarchical levels
Issue -
State: closed - Opened by CEMoffat over 8 years ago
- 2 comments
#17 - error message with theta.msat
Issue -
State: closed - Opened by kathfi over 8 years ago
- 1 comment
#16 - error message with theta.msat
Issue -
State: closed - Opened by kathfi over 8 years ago
- 5 comments
#15 - fixing conversion from loci to genind - . treated as NA
Pull Request -
State: closed - Opened by thibautjombart almost 9 years ago
- 1 comment
#14 - NAs in loci2genind "." treated as an allele
Issue -
State: closed - Opened by thibautjombart almost 9 years ago
- 1 comment
#13 - when would hw.test produce NA?
Issue -
State: closed - Opened by romunov almost 9 years ago
- 1 comment
#12 - conversion issue genind objects
Issue -
State: closed - Opened by juance100 about 9 years ago
- 1 comment
#11 - enhancement for read.vcf function?
Issue -
State: closed - Opened by lduvaux about 9 years ago
- 1 comment
#10 - Potential bug / conversion issue
Issue -
State: closed - Opened by thibautjombart about 9 years ago
- 3 comments
#9 - as.romans not found in utils
Issue -
State: closed - Opened by zkamvar about 9 years ago
- 1 comment
#8 - Change util to utils in imports
Pull Request -
State: closed - Opened by zkamvar over 9 years ago
- 1 comment
#7 - The link to fstat in pegas Fst help is no longer valid
Issue -
State: closed - Opened by thibautjombart over 9 years ago
- 6 comments
#6 - hw.test.R problem with data set ncol > 170
Issue -
State: closed - Opened by thierrygosselin over 9 years ago
- 2 comments
#5 - filter out haplotypes by frequency
Issue -
State: closed - Opened by emmanuelparadis over 9 years ago
- 5 comments
#4 - haplotype network from the "haplotype.loci" class
Issue -
State: closed - Opened by emmanuelparadis over 9 years ago
- 6 comments
#3 - haploNet
Issue -
State: closed - Opened by jhmarcus over 9 years ago
- 4 comments
#2 - Fix rhs/data issue in amova
Pull Request -
State: closed - Opened by zkamvar over 9 years ago
- 5 comments
#1 - Implementation of hw.test as generic + methods
Pull Request -
State: closed - Opened by thibautjombart over 9 years ago
- 3 comments