emmanuelparadis/ape issues and pull requests

#20 - fix phylogram.plot to allow numeric input vectors for lty

Pull Request - State: closed - Opened by KlausVigo about 3 years ago

#19 - recent changes to plot.phylo / phylogram.plot have side effext

Issue - State: closed - Opened by KlausVigo about 3 years ago - 1 comment

#18 - A problem regarding calculating phylogenetic signal (λ) via R

Issue - State: closed - Opened by PyrrhaNiko about 3 years ago - 1 comment

#17 - Rounding error deep in 'pcoa'

Issue - State: closed - Opened by cjcarlson about 3 years ago - 4 comments

#16 - Allow styling of nodes within `phylogram.plot()`

Pull Request - State: closed - Opened by ms609 about 3 years ago

#15 - Use graphical parameters to set plot defaults

Pull Request - State: closed - Opened by ms609 about 3 years ago - 1 comment

#14 - (Some) large trees fail in ape 5.5

Issue - State: closed - Opened by erikrikarddaniel about 3 years ago - 5 comments

#13 - Error in chronos function

Issue - State: closed - Opened by takaW496 about 3 years ago - 6 comments

#12 - bug in nj() -- ape 5.5

Issue - State: closed - Opened by emmanuelparadis about 3 years ago - 3 comments

#11 - faster multi2di for large trees (avoid which)

Pull Request - State: closed - Opened by KlausVigo about 3 years ago - 1 comment

#10 - fixed bug of as.phylo for multiple class object

Pull Request - State: closed - Opened by GuangchuangYu about 3 years ago - 2 comments

#9 - Bug in ape 5.5

Issue - State: closed - Opened by TJrogers86 about 3 years ago - 5 comments

#8 - fix some edge cases for ONEwise

Pull Request - State: closed - Opened by KlausVigo about 3 years ago - 1 comment

#7 - add SHORTwise and replace ONEwise with SHORTwise in postprocess.prop.…

Pull Request - State: closed - Opened by KlausVigo about 3 years ago - 2 comments

#6 - read.nexus.data does not handle continuous characters

Issue - State: closed - Opened by brpetrucci over 3 years ago - 2 comments

#5 - Enable `type = "s"` in `ltt.plot.coords()`

Pull Request - State: closed - Opened by TheoPannetier over 3 years ago - 1 comment

#4 - add node labels to tree. "Nicer" plot in man page

Pull Request - State: closed - Opened by KlausVigo over 3 years ago - 1 comment

#3 - ltt.plot() and ltt.plot.coords() misinterpret extinction events?

Issue - State: closed - Opened by TheoPannetier over 3 years ago - 7 comments

#2 - fixed parsing tree with single quoted labels

Pull Request - State: closed - Opened by GuangchuangYu over 3 years ago

#1 - labels with single quotes in some Newick trees are badly read

Issue - State: closed - Opened by emmanuelparadis over 3 years ago - 1 comment

Ecosyste.ms: Issues

GitHub / emmanuelparadis/ape issues and pull requests