emi80/idxtools issues and pull requests

#41 - Bump ipython from 7.16.3 to 8.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#40 - Bump ipython from 0.13.2 to 7.16.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#39 - Fix issue with equal sign in tag value

Issue - State: open - Opened by emi80 over 8 years ago
Labels: bug

#38 - Fix issue when tag value with spaces also contains quotes

Issue - State: open - Opened by emi80 over 8 years ago
Labels: bug

#37 - Allow keyword trailing character between quotes in tags values

Issue - State: open - Opened by emi80 over 8 years ago
Labels: bug

#36 - Use Click for the command line interface

Issue - State: open - Opened by emi80 about 9 years ago
Labels: enhancement, CLI

#35 - Index - use generators in export method

Issue - State: open - Opened by emi80 about 9 years ago

#34 - Re-implement parsing code for indexfile format

Issue - State: open - Opened by emi80 about 9 years ago
Labels: enhancement, API

#33 - Refactor configuration and format structure

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#32 - Add support for nested dictionaries to DotDict update

Issue - State: open - Opened by emi80 about 9 years ago
Labels: Utils

#31 - Remove format attribute from Index - use config format instead

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#30 - Add index file consistency check to Index class

Issue - State: open - Opened by emi80 about 9 years ago
Labels: enhancement, API

#29 - Rewrite utils.match completely

Issue - State: open - Opened by emi80 about 9 years ago
Labels: bug, Utils

#28 - Improve DotDict

Issue - State: open - Opened by emi80 about 9 years ago
Labels: Utils

#27 - Make 'type' attribute optional also when removing files from a Dataset

Issue - State: open - Opened by emi80 about 9 years ago

#26 - Improve contains method of Dataset

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#25 - Make 'type' attribute optional when adding files to a Dataset

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#24 - Add some utility functions for iterating Dataset keys and items

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#23 - Add option to check file existence when adding files to a Dataset

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#22 - Replace Dataset _attributes with _callbacks

Issue - State: open - Opened by emi80 about 9 years ago
Labels: bug, API

#21 - Support Dataset attribute access/deletion by file attribute value

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#20 - Add global config module

Issue - State: open - Opened by emi80 about 9 years ago
Labels: enhancement, API

#19 - Add more output formats to the Index export function

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#18 - Support Index creation from stream

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#17 - Move index file locking into API

Issue - State: open - Opened by emi80 about 9 years ago
Labels: API

#16 - [cli] Better management of input

Issue - State: closed - Opened by emi80 almost 10 years ago
Labels: bug

#15 - [cli] Support insertion of multiple files at once

Issue - State: closed - Opened by emi80 almost 10 years ago
Labels: enhancement

#14 - Add files to the index when importing from TSV/CSV.

Issue - State: open - Opened by emi80 almost 10 years ago
Labels: enhancement, API

#13 - [core] Some replicate ids cannot be found when adding new file for existing replicates

Issue - State: closed - Opened by emi80 about 10 years ago
Labels: bug

#12 - [cli] re-add support for index file and format environment variables

Issue - State: closed - Opened by emi80 about 10 years ago
Labels: bug

#11 - [api] remove all files for a given type from a Dataset

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: enhancement

#10 - Implement aggregated counts

Issue - State: open - Opened by emi80 over 10 years ago
Labels: enhancement, API

#9 - [cli] always prefer stdin to IDX_FILE

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: bug

#8 - [cli][remove] Support removal of entire dataset

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: enhancement

#7 - [cli][show] index lock is not released when command output is piped

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: bug

#6 - [global] use loggers

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: enhancement

#5 - [cli][show] modify cli to accept ids for replicates

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: bug

#4 - Use index format to generate docstring for options parsing

Issue - State: open - Opened by emi80 over 10 years ago
Labels: enhancement, CLI

#3 - [api] create metadata for replicates

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: enhancement

#2 - [cli][remove] delete multiple files

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: enhancement

#1 - [cli][remove] add an option to clear metadata if deleting the last file in a dataset

Issue - State: closed - Opened by emi80 over 10 years ago
Labels: enhancement

GitHub / emi80/idxtools issues and pull requests