Ecosyste.ms: Issues

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GitHub / ellisdg/3DUnetCNN issues and pull requests

#100 - How to add repository directory

Issue - State: closed - Opened by PoonamZ over 6 years ago - 3 comments

#99 - The predicted results appear to be incorrect

Issue - State: closed - Opened by connorchen over 6 years ago - 3 comments

#98 - about predict and evaluate.

Issue - State: closed - Opened by wcfzl over 6 years ago - 6 comments
Labels: wontfix

#97 - Can this code use multi GPU to increase block size

Issue - State: closed - Opened by liuyongqing over 6 years ago - 4 comments
Labels: wontfix

#96 - Segmentation on pre-trained models is not right

Issue - State: closed - Opened by sabrinamusatian over 6 years ago - 6 comments
Labels: wontfix

#95 - Using own 3d datasets

Issue - State: closed - Opened by SnowRipple over 6 years ago - 11 comments
Labels: wontfix

#94 - Using Categorical_crossentropy, Loss Unable to Converge

Issue - State: closed - Opened by MissLikeWind over 6 years ago - 3 comments
Labels: wontfix

#93 - ValueError: close_fds is not supported on Windows platforms if you redirect stdin/stdout/stderr

Issue - State: closed - Opened by ggsf13 over 6 years ago - 2 comments
Labels: wontfix

#92 - tensorflow, works on single gpu, seg faults on multi gpu

Issue - State: closed - Opened by mingrui over 6 years ago - 2 comments

#91 - Image Sampling Fix

Pull Request - State: closed - Opened by ellisdg over 6 years ago

#90 - What is the purpose of bias_correction in converting brats data?

Issue - State: closed - Opened by MissLikeWind over 6 years ago - 2 comments

#89 - getting the data

Issue - State: closed - Opened by sflender over 6 years ago - 3 comments

#88 - ValueError: When using a generator for validation data, you must specify a value for `validation_steps`.

Issue - State: closed - Opened by Joeng22 over 6 years ago - 2 comments
Labels: wontfix

#87 - How to visualize the .nii.gz data?

Issue - State: closed - Opened by MissLikeWind over 6 years ago - 4 comments

#86 - validation steps

Issue - State: closed - Opened by primentropy over 6 years ago - 13 comments
Labels: wontfix

#85 - early stopping

Issue - State: closed - Opened by DonnieKim411 over 6 years ago - 4 comments
Labels: wontfix

#84 - Fixes issue with incorrect reading of preprocessing files.

Pull Request - State: closed - Opened by ellisdg over 6 years ago

#83 - No module named brats.train

Issue - State: closed - Opened by DonnieKim411 almost 7 years ago - 6 comments

#82 - An error from the C extension of tables(HDF5)

Issue - State: closed - Opened by microdyb almost 7 years ago - 9 comments
Labels: wontfix

#81 - How to run test code

Issue - State: closed - Opened by huanzhou94 almost 7 years ago - 3 comments
Labels: wontfix

#80 - TypeError: ('Keyword argument not understood:', 'output_shape')

Issue - State: closed - Opened by hawkeyedesi almost 7 years ago - 5 comments

#79 - Fix model loading

Pull Request - State: closed - Opened by ellisdg almost 7 years ago

#78 - Unknown layer: InstanceNormalization

Issue - State: closed - Opened by chenypic almost 7 years ago - 1 comment

#77 - Trained UNET model file

Issue - State: closed - Opened by hawkeyedesi almost 7 years ago - 3 comments

#76 - preprocessing is not working -> convert_brats_data("data/original", "data/preprocessed")

Issue - State: closed - Opened by devareddy almost 7 years ago - 4 comments
Labels: wontfix

#75 - Predicts only background for lung tumour segmentation

Issue - State: closed - Opened by trathpai almost 7 years ago - 4 comments
Labels: wontfix

#74 - Input format for annotated patches

Issue - State: closed - Opened by yoda-vid almost 7 years ago - 2 comments
Labels: wontfix

#73 - "ValueError: Unknown layer: InstanceNormalization" while predicting (isensee2017)

Issue - State: closed - Opened by b-z almost 7 years ago - 5 comments

#72 - What is the exact output shape for this network

Issue - State: closed - Opened by poornasandur almost 7 years ago - 3 comments
Labels: wontfix

#71 - global name 'exc' is not defined

Issue - State: closed - Opened by shaniceC almost 7 years ago - 1 comment
Labels: wontfix

#70 - prediction speed is getting slower

Issue - State: closed - Opened by Jun0Park almost 7 years ago - 1 comment
Labels: wontfix

#69 - Adds Isensee et al. 2017 model along with prediction reports

Pull Request - State: closed - Opened by ellisdg almost 7 years ago

#68 - Any rule for patch_shape?

Issue - State: closed - Opened by Jun0Park almost 7 years ago - 4 comments

#67 - Imports Deconvolution3D from Keras

Pull Request - State: closed - Opened by ellisdg almost 7 years ago

#66 - Version of TF and Keras

Issue - State: closed - Opened by arielluluh almost 7 years ago - 3 comments
Labels: wontfix

#65 - Use Deconvolution3D from keras

Pull Request - State: closed - Opened by alkamid almost 7 years ago - 1 comment

#64 - why do we need n_label configuration?

Issue - State: closed - Opened by Jun0Park almost 7 years ago - 4 comments

#63 - Training on whole image

Issue - State: closed - Opened by mingrui almost 7 years ago - 5 comments
Labels: wontfix

#62 - Error Running

Issue - State: closed - Opened by eddyrene almost 7 years ago - 9 comments
Labels: wontfix

#61 - Use it for regression

Issue - State: closed - Opened by DongqingZhang almost 7 years ago - 2 comments
Labels: wontfix

#58 - Segmentation fault (core dumped)

Issue - State: closed - Opened by dbonner almost 7 years ago - 25 comments
Labels: wontfix

#57 - Is it possible to share training error?

Issue - State: closed - Opened by DongqingZhang almost 7 years ago - 10 comments
Labels: wontfix

#56 - keras_contrib has removed Deconvolution3D

Issue - State: closed - Opened by mingrui almost 7 years ago - 3 comments

#55 - Adds TravisCI

Pull Request - State: closed - Opened by ellisdg almost 7 years ago - 1 comment
Labels: wontfix

#54 - FIX: adds mising convolution layers

Pull Request - State: closed - Opened by ellisdg almost 7 years ago

#53 - which version of python to use?

Issue - State: closed - Opened by mingrui almost 7 years ago - 1 comment

#51 - Can you please provide the code of testing ?

Issue - State: closed - Opened by Philex5 about 7 years ago

#50 - Can you please provide the code for testing ?

Issue - State: closed - Opened by Philex5 about 7 years ago

#49 - Attempted relative import in non-package

Issue - State: closed - Opened by sunhuaiqiang about 7 years ago - 1 comment

#48 - Could i use this model to solve the CT lung images problems?

Issue - State: closed - Opened by HiImgosuuuu about 7 years ago - 4 comments
Labels: wontfix

#47 - zlib.error: Error -2 while decompressing data: inconsistent stream state

Issue - State: closed - Opened by lilyliu-love about 7 years ago - 2 comments

#46 - difference with the model described in the 3D Unet paper?

Issue - State: closed - Opened by snapfinger about 7 years ago - 2 comments

#45 - Convert to Tensorflow

Issue - State: closed - Opened by leacornelio about 7 years ago - 7 comments
Labels: wontfix

#44 - I can`t download the data,can u help me?

Issue - State: closed - Opened by lilyliu-love about 7 years ago - 1 comment

#43 - Concatenate layer requires inputs with matching shapes

Issue - State: closed - Opened by WGierke about 7 years ago - 1 comment

#42 - how to match input shape with array of shape

Issue - State: closed - Opened by arielluluh about 7 years ago - 15 comments
Labels: wontfix

#41 - Testing of the model

Issue - State: closed - Opened by build2create about 7 years ago - 2 comments

#40 - 3d vessel Segmentation and Testing issue

Issue - State: closed - Opened by arielluluh about 7 years ago - 5 comments
Labels: wontfix

#39 - Why there is no Batch Normalization or dropout layer in the model?

Issue - State: closed - Opened by pengchengu about 7 years ago - 1 comment

#38 - Why you get a common foreground mask in advance in preprocessing?

Issue - State: closed - Opened by namco1992 about 7 years ago - 7 comments

#37 - Can you please provide more training examples?

Issue - State: closed - Opened by edraizen about 7 years ago - 2 comments
Labels: help wanted

#36 - Implementation of label map and viewing prediction.nii.gz

Issue - State: closed - Opened by build2create about 7 years ago - 1 comment

#35 - Pre-trained models

Issue - State: closed - Opened by User-Ali about 7 years ago - 3 comments
Labels: wontfix

#34 - Could I use this model to solve the 3-D image classification problem?

Issue - State: closed - Opened by lisen0 about 7 years ago - 7 comments
Labels: wontfix

#33 - The loss and dice_coef are not consistent to each other.

Issue - State: closed - Opened by salan668 about 7 years ago - 4 comments

#32 - Interface N4BiasFieldCorrection failed to run

Issue - State: closed - Opened by iamyourdaddy about 7 years ago - 1 comment

#31 - Improves documentation

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#30 - keras-contrib version

Issue - State: closed - Opened by nick917 over 7 years ago - 1 comment

#29 - convert_brats_data NotImplementedError

Issue - State: closed - Opened by navidnadery over 7 years ago - 22 comments
Labels: wontfix

#28 - About Brats2015 datasets

Issue - State: closed - Opened by zll152 over 7 years ago - 2 comments

#27 - About Brats2015 datasets

Issue - State: closed - Opened by zll152 over 7 years ago

#26 - N4BiasFieldCorrection

Issue - State: closed - Opened by KrzysztofKotowski over 7 years ago - 2 comments

#25 - Major updates and changes

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#24 - Query about the preprocessing

Issue - State: closed - Opened by namco1992 over 7 years ago - 3 comments

#23 - Takes the means of the stds rather than the stds of the means

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#22 - unused list:stds unet3d/normalize.py

Issue - State: closed - Opened by rasaxena over 7 years ago - 1 comment

#21 - about iseg2017

Issue - State: closed - Opened by shu-hai over 7 years ago - 3 comments

#20 - Why dice loss is -dice coef?

Issue - State: closed - Opened by munanning over 7 years ago - 3 comments

#19 - Adds data augmentation options

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#18 - STYLE: More refactoring

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#17 - Refactoring

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#16 - Structure.?

Issue - State: closed - Opened by 32nguyen over 7 years ago - 4 comments

#15 - Why do you choose shape(144,144,144)?

Issue - State: closed - Opened by mjiansun over 7 years ago - 7 comments

#14 - Adds support for multi-class prediction

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#13 - Replaces Upsampling with Deconvolution

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#12 - FIX: Doubles nb_filters before max pooling and after upsampling

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#11 - Deconvolution instead of Upsampling

Issue - State: closed - Opened by alexklibisz over 7 years ago - 1 comment

#10 - Doubling channels before pooling

Issue - State: closed - Opened by alexklibisz over 7 years ago - 2 comments

#9 - What is the correct way to install ANTs N4Bias?

Issue - State: closed - Opened by munanning over 7 years ago - 7 comments

#8 - Running the code in GPU

Issue - State: closed - Opened by build2create over 7 years ago - 3 comments

#7 - Running testing.py

Issue - State: closed - Opened by build2create over 7 years ago - 22 comments

#6 - Expected size of training data set and metrics for accuracy

Issue - State: closed - Opened by build2create over 7 years ago - 14 comments

#5 - nibabel.filebasedimages.ImageFileError

Issue - State: closed - Opened by build2create over 7 years ago - 8 comments

#4 - Adds generator and updates cropping

Pull Request - State: closed - Opened by ellisdg over 7 years ago

#3 - I don't what the code means,please help me,thank you～

Issue - State: closed - Opened by Kaido0 over 7 years ago - 3 comments

#2 - when i run UnetTraining,i has so many problem.

Issue - State: closed - Opened by mjiansun over 7 years ago - 12 comments