eigenvivek/DiffDRR issues and pull requests

#131 - 2D-3D registration example is outdated

Issue - State: closed - Opened by BraveDistribution over 1 year ago - 3 comments
Labels: bug

#130 - DRR intensity inconsistency.

Issue - State: closed - Opened by BraveDistribution over 1 year ago - 10 comments

#129 - Pytorch 2.0 migration

Issue - State: closed - Opened by eigenvivek over 1 year ago - 2 comments

#128 - Could you please add the image optimization code for nuts/durian?

Issue - State: closed - Opened by tuobaye11 over 1 year ago - 3 comments

#127 - Rewrite DICOM reader with imageio

Issue - State: closed - Opened by eigenvivek over 1 year ago

#126 - Implement with nbdev

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#125 - Try nbdev for docs & conda install

Issue - State: closed - Opened by eigenvivek over 1 year ago

#124 - Update load.py

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#123 - Make default DiffDRR dtype torch.float32

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#122 - Change default dtype

Issue - State: closed - Opened by eigenvivek over 1 year ago

#121 - Redo Siddon class as a function

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#120 - Change `Siddon` to a function call

Issue - State: closed - Opened by eigenvivek over 1 year ago

#119 - Batch :(

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#118 - Update plotting function

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#117 - Returned DRR should have shape [b, c, h, w]

Issue - State: closed - Opened by eigenvivek over 1 year ago

#116 - Adopt PyTorch conventions and best practices

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#115 - Remove assumption of 6Dof problem

Issue - State: closed - Opened by eigenvivek over 1 year ago

#114 - Implement normal `.to` behavior for the module

Issue - State: closed - Opened by eigenvivek over 1 year ago

#113 - SDR should be stored with batch size 1 for single DRR optimization

Issue - State: closed - Opened by eigenvivek over 1 year ago

#112 - Plotting functions should accept channel dimension (and allow the user to plot batches of DRRs)

Issue - State: closed - Opened by eigenvivek over 1 year ago

#111 - Metrics should accept channel dimension

Issue - State: closed - Opened by eigenvivek over 1 year ago

#110 - Standardize output with PyTorch conventions

Issue - State: closed - Opened by eigenvivek over 1 year ago

#109 - Update camera.py

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#108 - Fix batching and add test data

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#107 - Batches definitely don't work

Issue - State: closed - Opened by eigenvivek over 1 year ago

#106 - Example CT scan is not getting packaged

Issue - State: closed - Opened by eigenvivek over 1 year ago

#105 - Overhaul 3D plotting with pyvista

Issue - State: closed - Opened by eigenvivek over 1 year ago - 1 comment

#104 - Update version.py

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#103 - Add different offsets for even and odd heights

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#102 - Basis issue for even sized DRRs

Issue - State: closed - Opened by eigenvivek over 1 year ago
Labels: bug

#101 - Make `dtype` of the DRR settable (#101)

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#100 - Clarification about CT values / density

Issue - State: closed - Opened by hemmer over 1 year ago - 2 comments

#99 - Dtype

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#98 - Add imageio animation library

Pull Request - State: closed - Opened by eigenvivek over 1 year ago

#97 - Add CI fix

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#96 - Randomly subsample projections

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#95 - Add parallel beam projections

Issue - State: closed - Opened by eigenvivek almost 2 years ago - 1 comment
Labels: enhancement

#94 - Reimplement animation pipeline with `imageio`

Issue - State: closed - Opened by eigenvivek almost 2 years ago

#93 - Update environment.yml

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#92 - Use two or more GPUs

Issue - State: closed - Opened by zenghy96 almost 2 years ago - 3 comments
Labels: enhancement

#91 - `libcufile=1.5.0.59` breaks CI

Issue - State: closed - Opened by eigenvivek almost 2 years ago

#90 - Flesh out docs

Issue - State: closed - Opened by eigenvivek almost 2 years ago - 1 comment
Labels: documentation

#89 - Make subsampling stochastic

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: enhancement

#88 - Add PyPI install

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#87 - Update README.md

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#86 - Update CI.yml

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#85 - Implement sparse registration

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#84 - Allow user to select one of many GPUs

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: enhancement

#83 - Update spacings throughout code

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#82 - Start working with normalized basis code

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#81 - Normalized basis

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#80 - Fix normalization of detector plane basis vectors

Issue - State: closed - Opened by eigenvivek almost 2 years ago

#79 - Merge upstream changes

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#78 - Use micromamba for CI

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#77 - Unstructure the forward projection model

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#76 - Upgrade to PyTorch 1.13

Issue - State: closed - Opened by eigenvivek almost 2 years ago

#75 - Add deprecation warning for Siddon-Jacob's

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: bug

#74 - Update PyTorch version

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#73 - Extend to projections of 2D data

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: enhancement

#72 - Fix registration example and add L-BFGS

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#71 - Add LBFGS registration comparison

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: enhancement

#70 - Registration experiments are also broken

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: bug

#69 - Unstructure the forward model code

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: enhancement

#68 - Fix some notebooks (#68)

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#67 - Update API in old notebooks

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: bug, documentation

#66 - Breaking changes for 3D plotting functions

Issue - State: closed - Opened by eigenvivek almost 2 years ago
Labels: bug

#65 - Use einsum to batch DRR computation

Pull Request - State: closed - Opened by eigenvivek almost 2 years ago

#64 - Multiresolution DRRs

Issue - State: closed - Opened by eigenvivek almost 2 years ago - 1 comment
Labels: enhancement

#63 - Switch to einsum notation

Issue - State: closed - Opened by eigenvivek about 2 years ago

#62 - Gradient-free based optimization comparison

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#61 - Add comparison to Nelder-Mead (gradient-free optimization)

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: enhancement

#60 - Figure out how to cache conda environment for quicker CI

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: documentation

#59 - Update python-package-conda.yml

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#58 - Remove whitespace in GIFs

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#57 - Merge tests

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#56 - Add testing and CI

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#55 - Add tests

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#54 - Create python-package-conda.yml

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#53 - Remove whitespace around saved gifs

Issue - State: closed - Opened by eigenvivek about 2 years ago - 1 comment
Labels: enhancement

#52 - Add updates to README and figures

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#51 - Add documentation

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: documentation

#50 - Setup continuous integration

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: documentation

#49 - Add tests

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: documentation

#48 - Update README.md

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#47 - Add citation

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: documentation

#46 - Add badges

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: documentation

#45 - Update

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#44 - Update notebook API

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#43 - Get the initialization neural network working

Issue - State: closed - Opened by eigenvivek about 2 years ago - 3 comments
Labels: bug

#42 - Rename module src->diffdrr

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#41 - Fix gif frame rate

Pull Request - State: closed - Opened by eigenvivek about 2 years ago

#40 - Camera-ready submission TODOs

Issue - State: closed - Opened by eigenvivek about 2 years ago

#39 - Fix GIF framerate

Issue - State: closed - Opened by eigenvivek about 2 years ago

#37 - Rename package from src -> diffdrr

Issue - State: closed - Opened by eigenvivek about 2 years ago

#30 - Enable batch computation of DRRs

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: enhancement

#22 - Enable computation of sparse DRRs

Issue - State: closed - Opened by eigenvivek about 2 years ago
Labels: enhancement

#10 - Dynamically delete tensors during DRR generation

Issue - State: closed - Opened by eigenvivek about 2 years ago - 1 comment
Labels: enhancement

GitHub / eigenvivek/DiffDRR issues and pull requests