Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / edeno/Jadhav-2016-Data-Analysis issues and pull requests
#100 - Ripple Triggered Coherence Plots
Issue -
State: closed - Opened by edeno almost 8 years ago
- 2 comments
#99 - Does canonical group delay exist?
Issue -
State: closed - Opened by edeno almost 8 years ago
#98 - Create notebook showing group delay with coherence thresholding on simulated data
Issue -
State: closed - Opened by edeno almost 8 years ago
#97 - Implement clusterless decoding for use on the computing cluster
Issue -
State: closed - Opened by edeno almost 8 years ago
#96 - Plot ripple-locked coherence averaged over epochs
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#95 - Plot baseline coherence
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#94 - Add number of pairs per group in coherence plots
Issue -
State: closed - Opened by edeno almost 8 years ago
#93 - Add code for getting the group delay from significant coherence
Issue -
State: closed - Opened by edeno almost 8 years ago
#92 - Add code for finding significant coherence
Issue -
State: closed - Opened by edeno almost 8 years ago
#91 - Plot scatter plot of baseline coherence vs. ripple locked
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#90 - Plot time domain signals around ripple
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#89 - Plot power spectra of areas
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#88 - Double check ground process intensity
Issue -
State: closed - Opened by edeno almost 8 years ago
#87 - Multi-taper smoothing affects group delay
Issue -
State: closed - Opened by edeno almost 8 years ago
#86 - Cluster not running the correct version of the code
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#85 - Parallelize ripple decoding
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
Labels: enhancement
#84 - Report coherence or magnitude squared coherence?
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
Labels: question
#83 - Compute canonical coherence group delay
Issue -
State: closed - Opened by edeno almost 8 years ago
#82 - scipy.stats.norm.pdf is slow
Issue -
State: closed - Opened by edeno almost 8 years ago
Labels: enhancement
#81 - Double check the equation for the joint mark intensity
Issue -
State: closed - Opened by edeno almost 8 years ago
#80 - Double check the concatenation of the ripple spikes
Issue -
State: closed - Opened by edeno almost 8 years ago
#79 - Parametric bootstrap of Fourier coefficients to capture uncertainty in group delay
Issue -
State: closed - Opened by edeno almost 8 years ago
#78 - Eliminate dependencies on data processing module
Issue -
State: closed - Opened by edeno almost 8 years ago
#77 - Use EM to estimate replay speed
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#76 - Double check that droping NaNs on ripple locked LFPs makes sense and we aren't losing too much data
Issue -
State: closed - Opened by edeno almost 8 years ago
#75 - Deal with symmetry of tetrode pair brain areas
Issue -
State: closed - Opened by edeno almost 8 years ago
#74 - Data structure for area pairs in canonical coherence
Issue -
State: closed - Opened by edeno almost 8 years ago
#73 - Level names not always in same order
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#72 - Compute group delay on entire session with sliding windows
Issue -
State: closed - Opened by edeno almost 8 years ago
#71 - What to use as pre-ripple baseline?
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
Labels: question
#70 - Fill out Gant chart for Loren
Issue -
State: closed - Opened by edeno almost 8 years ago
#69 - Email Shantanu to get the matclust files for the marked point processes
Issue -
State: closed - Opened by edeno almost 8 years ago
#68 - File HPc_06_04 isn't running on the cluster
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#67 - Implement canonical coherence on the cluster
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#66 - Handle perfect predictors in GLM fitting
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#65 - Implement spectral granger on the cluster
Issue -
State: closed - Opened by edeno almost 8 years ago
#64 - Implement ripple triggered coherence on the cluster code
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
#63 - Implement non-parametric spectral granger
Issue -
State: closed - Opened by edeno almost 8 years ago
#62 - More stable way to compute the matrix inverse in spectral granger?
Issue -
State: closed - Opened by edeno almost 8 years ago
#61 - Use non-parametric version of spectral granger?
Issue -
State: closed - Opened by edeno almost 8 years ago
#60 - Proper way to deal with multiple trials in spectral granger?
Issue -
State: closed - Opened by edeno almost 8 years ago
#59 - Canonical Coherence is sensitive to the number of electrodes in each group
Issue -
State: closed - Opened by edeno almost 8 years ago
- 1 comment
Labels: question
#58 - Make sure data is centered in the right axis for canonical coherence
Issue -
State: closed - Opened by edeno almost 8 years ago
#57 - Memoize spectral functions?
Issue -
State: closed - Opened by edeno about 8 years ago
Labels: enhancement
#56 - Use numpy instead of python lists for input to coherence functions?
Issue -
State: closed - Opened by edeno about 8 years ago
#55 - Replace print statements with logging module
Issue -
State: closed - Opened by edeno about 8 years ago
Labels: enhancement
#54 - Degrees of freedom for GLM spline
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#53 - Linear distance < 0
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
Labels: bug
#52 - Exclude reference tetrodes in analysis
Issue -
State: closed - Opened by edeno about 8 years ago
#51 - Find out why tetrodes marked "riptet" are better for ripple detection
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#50 - Criterion for neuron exclusion
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#49 - Add session time categorical to the ripple_info data structure
Issue -
State: closed - Opened by edeno about 8 years ago
#48 - Compute spectrogram of ripples in ripple band for CA1 tetrodes
Issue -
State: closed - Opened by edeno about 8 years ago
#47 - Compute coherence by ripple type
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#46 - Take spectrogram of PFC tetrodes on entire experiment
Issue -
State: closed - Opened by edeno about 8 years ago
#45 - Compute canonical coherence
Issue -
State: closed - Opened by edeno about 8 years ago
#44 - Compute spectral granger causality
Issue -
State: closed - Opened by edeno about 8 years ago
#43 - Which frequencies should we focus on?
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#42 - Rename data_filter module to data_processing
Issue -
State: closed - Opened by edeno about 8 years ago
#41 - Make an interactive visualization of the ripple decoding
Issue -
State: closed - Opened by edeno about 8 years ago
#40 - Are there files in the current dataset we can use for marks
Issue -
State: closed - Opened by edeno about 8 years ago
- 2 comments
#39 - Are the candripples files the consensus ripples from Loren Frank's lab?
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#38 - Is the encoding model fitting properly?
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#37 - Add to ripple summary statistics: number of spikes per ripple, number of unique spikes per ripple
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#36 - Add 1% of firing rate as an offset as a baseline for the conditional intensity
Issue -
State: closed - Opened by edeno about 8 years ago
#35 - Use clusterless decoding or sorted spikes?
Issue -
State: closed - Opened by edeno about 8 years ago
#34 - Better model for reverse time trajectory for the ripple decoding
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#33 - Figure out how they do their referencing
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#32 - Should we use the Frank lab ripples or the Multitaper ripples
Issue -
State: closed - Opened by edeno about 8 years ago
- 2 comments
#31 - Use ripple detection method of Kay 2016?
Issue -
State: closed - Opened by edeno about 8 years ago
- 3 comments
#30 - Apply spectral analysis to different animal / epoch
Issue -
State: closed - Opened by edeno about 8 years ago
#29 - Subtract mean when computing the spectrum when computing power differences / coherence differences
Issue -
State: closed - Opened by edeno about 8 years ago
#28 - Setup meeting with Loren Frank
Issue -
State: closed - Opened by edeno about 8 years ago
#27 - Better function documentation
Issue -
State: open - Opened by edeno about 8 years ago
- 1 comment
#26 - Rename segments to peri-event window
Issue -
State: closed - Opened by edeno about 8 years ago
#25 - Write group delay test code
Issue -
State: closed - Opened by edeno about 8 years ago
#24 - Email to figure out how novel is each track exposure
Issue -
State: closed - Opened by edeno about 8 years ago
#23 - Normalize the ripples before computing the ripple triggered average LFP
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#22 - Compute point process spectra of the start times of the ripple events
Issue -
State: open - Opened by edeno about 8 years ago
#21 - Prepare slides for meeting with Loren Frank
Issue -
State: closed - Opened by edeno about 8 years ago
#20 - Should we include iCA1 when defining a ripple?
Issue -
State: closed - Opened by edeno about 8 years ago
- 3 comments
#19 - Scaling up analysis to process multiple days
Issue -
State: closed - Opened by edeno about 8 years ago
- 4 comments
#18 - Compute Gamma, Theta relative to ripples
Issue -
State: closed - Opened by edeno about 8 years ago
#17 - Write test code for ripple segmenting and spectral functions
Issue -
State: closed - Opened by edeno about 8 years ago
#16 - We should use their computed ripples in the spectral analysis for comparison
Issue -
State: closed - Opened by edeno about 8 years ago
#15 - Email paper about group delay
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#14 - Add speed criterion to ripple detection
Issue -
State: closed - Opened by edeno about 8 years ago
- 3 comments
#13 - Categorize ripple types
Issue -
State: closed - Opened by edeno about 8 years ago
- 2 comments
#12 - Examine phase locking pfc neurons to hippocampal theta
Issue -
State: closed - Opened by edeno about 8 years ago
- 1 comment
#11 - Compute Loeve spectrum to examine cross-frequency coupling
Issue -
State: closed - Opened by edeno about 8 years ago
#10 - Compute peri-event time histogram of neurons relative to ripple event
Issue -
State: open - Opened by edeno about 8 years ago
#9 - Compute ripple evoked response in PFC
Issue -
State: closed - Opened by edeno about 8 years ago
#8 - Compute Group Delay
Issue -
State: closed - Opened by edeno about 8 years ago
#7 - DIO pulses are corrupted for a couple of animals
Issue -
State: open - Opened by edeno over 8 years ago
- 2 comments
#6 - Quantify behavior
Issue -
State: open - Opened by edeno over 8 years ago
#5 - Decide whether it is easier to use the Frank Lab Data Filter Framework or if it's easier to code in own format
Issue -
State: closed - Opened by edeno over 8 years ago
- 1 comment
Labels: question
#4 - Reproduce analysis from Jadhav paper
Issue -
State: closed - Opened by edeno over 8 years ago
- 3 comments
#3 - Unsure on how to find information about a single trial
Issue -
State: closed - Opened by edeno over 8 years ago
- 2 comments
Labels: question
#2 - Unsure how to find the trials within the epochs
Issue -
State: closed - Opened by edeno over 8 years ago
- 1 comment
Labels: question
#1 - Having trouble finding all the LFP recordings
Issue -
State: closed - Opened by edeno over 8 years ago
- 1 comment
Labels: question