Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ecohealthalliance/repel-infrastructure issues and pull requests

#110 - REPEL: take down repel production server

Issue - State: closed - Opened by RobJY almost 3 years ago - 1 comment

#109 - Auth0 deprecation of Fixed Length Access Token & Authorization Code

Issue - State: closed - Opened by RobJY almost 3 years ago - 1 comment

#108 - Scrape error scrape-country-yearly-data.R

Issue - State: open - Opened by emmamendelsohn about 3 years ago - 1 comment

#107 - move aws creds to repel-automation user creds

Pull Request - State: closed - Opened by RobJY over 3 years ago

#106 - handling dupes in six month summaries

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#105 - scraper edits following simplification of repelpredict::augment

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#104 - scrape-on-deploy

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago - 4 comments

#103 - Refactor scrape six month

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#101 - Scrape cache model predictions

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago - 6 comments

#100 - vectorize na_interp() to improve speed

Issue - State: open - Opened by emmamendelsohn over 3 years ago

#99 - push individual db tables to stage and s3 instead of entire db

Issue - State: open - Opened by RobJY over 3 years ago
Labels: enhancement

#98 - speed up push to db and stage script

Issue - State: open - Opened by RobJY over 3 years ago

#97 - update Auth0 node version

Issue - State: closed - Opened by RobJY over 3 years ago - 1 comment

#96 - Documentation

Pull Request - State: open - Opened by RobJY over 3 years ago

#95 - Update scraper routine to include model prediction caching

Issue - State: closed - Opened by emmamendelsohn over 3 years ago - 2 comments

#94 - Scrape cache model predictions

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago - 1 comment

#93 - pull script reads in env and accepts host and port

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#92 - Scrape six month edits

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#91 - added explicit restore env vars for all workflows

Pull Request - State: closed - Opened by RobJY over 3 years ago

#90 - persist db in volume for local, minlocal and staging workflows

Pull Request - State: closed - Opened by RobJY over 3 years ago

#89 - resolves bug pushing to aws; updates readme

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#88 - Cache network additions

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#87 - Aws instance

Pull Request - State: closed - Opened by RobJY over 3 years ago

#86 - nginx needs routes for plumber API endpoints

Issue - State: closed - Opened by RobJY over 3 years ago - 3 comments

#84 - adding model coefficients to network model cache

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago - 3 comments

#83 - Scrape six months

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago - 2 comments

#82 - don't need to restore from AWS for staging

Pull Request - State: closed - Opened by RobJY over 3 years ago

#81 - add missing grant permissions function

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#80 - Aws instance

Pull Request - State: closed - Opened by RobJY over 3 years ago

#79 - Manually add outside users to Auth0

Issue - State: open - Opened by RobJY over 3 years ago

#78 - scraper log rotation

Issue - State: open - Opened by RobJY over 3 years ago

#77 - Make all uploads of CSVs to AWS set public permissions

Issue - State: open - Opened by noamross over 3 years ago - 6 comments

#76 - Make all uploads of CSVs to AWS set public permissions

Pull Request - State: closed - Opened by noamross over 3 years ago

#75 - function to test that outbreak scraper is working

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago - 1 comment

#74 - Scraper api outbreaks

Pull Request - State: closed - Opened by emmamendelsohn over 3 years ago

#73 - modify backup script

Issue - State: open - Opened by RobJY over 3 years ago

#71 - Consolidate R-based Dockerfiles and move to GitHub Actions

Pull Request - State: closed - Opened by noamross almost 4 years ago - 1 comment

#70 - Nowcast shiny

Pull Request - State: closed - Opened by emmamendelsohn almost 4 years ago

#69 - Update API

Issue - State: open - Opened by RobJY almost 4 years ago - 1 comment

#68 - deploy repel infrastructure to aws instance

Issue - State: open - Opened by RobJY almost 4 years ago

#67 - Add raster load script and a few other tweaks

Pull Request - State: closed - Opened by noamross almost 4 years ago - 6 comments

#66 - Cache nowcast summary

Pull Request - State: closed - Opened by emmamendelsohn almost 4 years ago

#65 - use connection pool in plumber.R

Issue - State: open - Opened by RobJY almost 4 years ago

#64 - update all containers to 4.0.4

Issue - State: open - Opened by RobJY almost 4 years ago - 1 comment

#63 - added grants to scraper push scripts

Pull Request - State: closed - Opened by RobJY almost 4 years ago

#62 - new tables not visible on kirby after using push scripts

Issue - State: open - Opened by RobJY almost 4 years ago - 3 comments
Labels: bug

#61 - Add Plumber API

Issue - State: closed - Opened by RobJY almost 4 years ago

#60 - create new AWS creds just for this project

Issue - State: open - Opened by RobJY almost 4 years ago

#59 - setting up cron for connect scraper

Pull Request - State: closed - Opened by emmamendelsohn about 4 years ago - 4 comments

#58 - fix hardcoded server names in outside db push script

Issue - State: open - Opened by RobJY about 4 years ago

#57 - Hotfix permissions

Pull Request - State: closed - Opened by RobJY about 4 years ago

#56 - sumarize promed data in import script

Issue - State: open - Opened by RobJY about 4 years ago

#55 - install repeldata in dockerfile

Pull Request - State: closed - Opened by emmamendelsohn about 4 years ago

#54 - Postgres columns

Pull Request - State: closed - Opened by emmamendelsohn about 4 years ago - 7 comments

#53 - Promed

Pull Request - State: closed - Opened by RobJY about 4 years ago

#53 - Promed

Pull Request - State: closed - Opened by RobJY about 4 years ago

#52 - improve postgres scripts

Issue - State: open - Opened by RobJY over 4 years ago

#51 - moved docker-compose-dev.yml to docker-compose-production.yml and upd…

Pull Request - State: closed - Opened by RobJY over 4 years ago

#50 - dynamic database host/port depending on working environment

Pull Request - State: closed - Opened by emmamendelsohn over 4 years ago

#49 - Minlocal workflow

Pull Request - State: closed - Opened by emmamendelsohn over 4 years ago

#48 - added redirect from /repel-scraper to local rstudio at 127.0.0.1:22097

Pull Request - State: closed - Opened by RobJY over 4 years ago

#47 - Port fix

Pull Request - State: closed - Opened by RobJY over 4 years ago

#46 - Script to clear local database

Issue - State: closed - Opened by noamross over 4 years ago - 1 comment

#45 - Add testing infrastructure to project

Issue - State: open - Opened by RobJY over 4 years ago

#44 - Write cron script to organize logs

Issue - State: open - Opened by RobJY over 4 years ago

#43 - update rocker versions and chown flag fix

Pull Request - State: closed - Opened by RobJY over 4 years ago

#42 - Update Rocker-based images to 4.0.2 tag

Issue - State: closed - Opened by noamross over 4 years ago - 8 comments

#41 - updated nginx restart to on-failure

Pull Request - State: closed - Opened by RobJY over 4 years ago

#40 - used new technique for stopping some local workflow containers

Pull Request - State: closed - Opened by RobJY over 4 years ago

#39 - Clean up verbose messages in scrapers

Issue - State: closed - Opened by emmamendelsohn over 4 years ago

#38 - Hotfix broken dev

Pull Request - State: closed - Opened by RobJY over 4 years ago

#37 - Portfix

Pull Request - State: closed - Opened by RobJY over 4 years ago

#36 - Standing up ProMED scraping and NLP

Issue - State: open - Opened by noamross over 4 years ago

#35 - Migrating storage from S3 to archive

Issue - State: open - Opened by noamross over 4 years ago

#34 - Production server

Issue - State: open - Opened by noamross over 4 years ago

#33 - Add password to RStudio server interface

Pull Request - State: closed - Opened by noamross over 4 years ago

#32 - Scrapefix

Pull Request - State: closed - Opened by RobJY over 4 years ago

#31 - removed unused contents of rshinyauth0 directory

Pull Request - State: closed - Opened by RobJY over 4 years ago

#30 - logs and reports working on web and locally so merging and closing branch

Pull Request - State: closed - Opened by RobJY over 4 years ago - 1 comment

#29 - Update push db local & aws to drop repeltmp if exists

Pull Request - State: closed - Opened by RobJY over 4 years ago

#28 - Swapdb

Pull Request - State: closed - Opened by RobJY over 4 years ago

#27 - added script to create postgres users when needed

Pull Request - State: closed - Opened by RobJY over 4 years ago

#26 - added full backup to push db script

Pull Request - State: closed - Opened by RobJY over 4 years ago

#25 - db scripts continue if dropdb fails

Pull Request - State: closed - Opened by RobJY over 4 years ago

#24 - updated GITHUB_PAT

Pull Request - State: closed - Opened by RobJY over 4 years ago

#23 - Permfix: working after Noam's updates

Pull Request - State: closed - Opened by RobJY over 4 years ago

#22 - new AWS ID and KEY

Pull Request - State: closed - Opened by RobJY almost 5 years ago - 5 comments

#21 - Workflows

Pull Request - State: closed - Opened by RobJY almost 5 years ago

#20 - WAHIS update triggers REPEL update

Issue - State: open - Opened by RobJY almost 5 years ago

#19 - deployment working to kirby

Pull Request - State: closed - Opened by RobJY almost 5 years ago

#18 - Scrapers

Pull Request - State: closed - Opened by emmamendelsohn almost 5 years ago

#17 - Workflows: switched pull_db_aws script

Pull Request - State: closed - Opened by RobJY almost 5 years ago - 2 comments

#16 - Do not update packages when installing from GitHub

Pull Request - State: closed - Opened by noamross almost 5 years ago

#15 - local workflow added

Pull Request - State: closed - Opened by RobJY almost 5 years ago

#14 - REPEL data client

Issue - State: closed - Opened by noamross almost 5 years ago - 2 comments

#13 - Stand up database server

Issue - State: closed - Opened by noamross almost 5 years ago - 1 comment

#12 - Duplicates in the annual report animal disease table

Issue - State: closed - Opened by emmamendelsohn almost 5 years ago - 1 comment
Labels: scraper