Ecosyste.ms: Issues

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GitHub / ecohealthalliance/EpiTator issues and pull requests

#59 - Bump numpy from 1.16.1 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#58 - pip install does not add doid_extention.ttl

Issue - State: open - Opened by alam121 over 3 years ago

#57 - TypeError on python -m epitator.importers.import_geonames in windows

Issue - State: open - Opened by nickynicolson over 4 years ago - 1 comment

#56 - Fix wrong data type of Windows field_size_limit

Pull Request - State: open - Opened by aauss over 4 years ago

#55 - Add the timezone in the now, if span_date has a timezone

Pull Request - State: closed - Opened by leobouscarrat over 5 years ago - 2 comments

#53 - Fix OverflowError: Python int too large to convert to C long on Windows

Pull Request - State: closed - Opened by aauss over 5 years ago - 1 comment

#52 - Omit recovered counts from Infection Annotator results

Pull Request - State: closed - Opened by nathanathan over 5 years ago

#51 - Remove usage of sqlite variables to prevent "too many SQL variables" error

Pull Request - State: closed - Opened by aauss over 5 years ago - 1 comment

#50 - Add contribution file

Pull Request - State: closed - Opened by aauss over 5 years ago - 1 comment

#49 - Fix Windows-specific error when setting field_size_limit

Pull Request - State: closed - Opened by aauss over 5 years ago - 2 comments

#48 - Add command-line flags to set proxy for importers

Pull Request - State: closed - Opened by aauss over 5 years ago - 7 comments

#47 - Add contribution file

Pull Request - State: closed - Opened by aauss over 5 years ago

#46 - Add command-line flags to set proxy for importers

Pull Request - State: closed - Opened by aauss over 5 years ago

#45 - How can I contribute

Issue - State: closed - Opened by aauss almost 6 years ago - 2 comments

#44 - Geoannotator improvements

Pull Request - State: closed - Opened by nathanathan almost 6 years ago

#43 - Berlin is not recognized.

Issue - State: closed - Opened by aauss about 6 years ago - 1 comment

#42 - Replace broken doc.to_json method with doc.to_dict

Pull Request - State: closed - Opened by nathanathan about 6 years ago

#41 - annodoc to_json() does not work

Issue - State: closed - Opened by aauss about 6 years ago - 2 comments

#40 - Add dedicated disease annotator

Pull Request - State: closed - Opened by nathanathan about 6 years ago

#39 - Documentation

Issue - State: closed - Opened by aauss about 6 years ago - 1 comment

#38 - Handle "as of" dates and update spacy

Pull Request - State: closed - Opened by nathanathan about 6 years ago

#37 - error in import_geonames.py

Issue - State: closed - Opened by AugustT over 6 years ago - 7 comments

#36 - Update README.rst

Pull Request - State: closed - Opened by AugustT over 6 years ago - 1 comment

#35 - Resolve geoannotator bug and python 3 importer errors

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#34 - Fix regex lib version incompatiblity

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#33 - Store structured data delimiter info

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#32 - Fix date parsing bugs

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#31 - Fix bugs in the structured incident extractor

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#30 - Add dedicated species annotator

Pull Request - State: closed - Opened by nathanathan over 6 years ago - 2 comments

#29 - Fix issue where SpaCy would use up all memory on large docs

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#28 - InfectionAnnotator

Pull Request - State: closed - Opened by toph-allen over 6 years ago - 1 comment

#27 - Add structured incident annotator

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#26 - Refactor AnnoSpan classes and fix date annotator bugs

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#25 - Structured incident annotator (WIP)

Pull Request - State: closed - Opened by nathanathan over 6 years ago

#24 - CountAnnotator2

Pull Request - State: closed - Opened by nathanathan over 6 years ago - 2 comments

#23 - Convenience methods

Pull Request - State: closed - Opened by toph-allen almost 7 years ago

#22 - Replace ra.follows with faster Annotier.with_following_spans_from function

Pull Request - State: closed - Opened by nathanathan almost 7 years ago - 2 comments

#21 - Handle space delimited counts

Pull Request - State: closed - Opened by nathanathan almost 7 years ago

#20 - Update SpaCy to 2.0

Pull Request - State: closed - Opened by nathanathan about 7 years ago - 1 comment

#19 - Optimize geoname annotator

Pull Request - State: closed - Opened by nathanathan about 7 years ago

#18 - Improve date string cleaning

Pull Request - State: closed - Opened by nathanathan about 7 years ago

#17 - When parsing date intervals include the end date

Pull Request - State: closed - Opened by nathanathan about 7 years ago - 1 comment

#16 - Detect zero counts and recovery counts

Pull Request - State: closed - Opened by nathanathan about 7 years ago - 1 comment

#15 - Fix false negatives in count lists

Pull Request - State: closed - Opened by nathanathan about 7 years ago - 1 comment

#14 - Extract purely numeric counts the NER is missing

Pull Request - State: closed - Opened by nathanathan about 7 years ago

#13 - Combine multipart geonames with more than 2 parts

Pull Request - State: closed - Opened by nathanathan about 7 years ago

#12 - Detect person descriptions as singular case counts

Pull Request - State: closed - Opened by nathanathan about 7 years ago

#11 - Refactor AnnoTier and fix bugs in date/count annotators

Pull Request - State: closed - Opened by nathanathan about 7 years ago

#10 - Misc. date annotator and case annotator improvements

Pull Request - State: closed - Opened by nathanathan over 7 years ago

#9 - Add wikidata animal disease import script

Pull Request - State: closed - Opened by nathanathan over 7 years ago

#8 - Fix date parsing bugs

Pull Request - State: closed - Opened by nathanathan over 7 years ago - 1 comment

#7 - Annotate count ranges

Pull Request - State: closed - Opened by nathanathan over 7 years ago

#6 - removing unneeded jvm-nlp tests that were failing

Pull Request - State: closed - Opened by Broham over 7 years ago - 1 comment

#5 - Add resolved species annotation

Pull Request - State: closed - Opened by nathanathan over 7 years ago - 5 comments

#4 - Add pure python date annotator

Pull Request - State: closed - Opened by nathanathan over 7 years ago

#3 - Use SpaCy to identify counts

Pull Request - State: closed - Opened by nathanathan over 7 years ago

#2 - Start adding python3 compatibility

Pull Request - State: closed - Opened by nathanathan over 7 years ago

#1 - Update names to epitator

Pull Request - State: closed - Opened by nathanathan over 7 years ago