Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ecell/ecell4 issues and pull requests
#98 - Error installation
Issue -
State: closed - Opened by onurburakozdemir 3 months ago
- 1 comment
#97 - ecell4 1.2.0 does not work with ecell4_base 2.0.5
Issue -
State: open - Opened by kozo2 over 3 years ago
- 1 comment
#96 - AttributeError: 'ecell4_base.core.NetworkModel' object has no attribute 'is_static'
Issue -
State: closed - Opened by kozo2 over 3 years ago
- 1 comment
#95 - name must be determined first
Pull Request -
State: closed - Opened by kaizu about 4 years ago
#94 - Feature/pysb
Pull Request -
State: closed - Opened by kaizu about 4 years ago
- 1 comment
#93 - Return a figure without showing it
Issue -
State: open - Opened by kaizu about 4 years ago
#92 - cyjs doesn't properly work
Issue -
State: open - Opened by kaizu about 4 years ago
- 2 comments
#91 - Return figure
Pull Request -
State: open - Opened by kaizu over 4 years ago
#90 - :bookmark: Bump version to 1.2.0b1
Pull Request -
State: closed - Opened by kozo2 over 4 years ago
#89 - Minor changes
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#88 - Plotting time series in 3D
Issue -
State: open - Opened by kaizu over 4 years ago
#87 - Add new dependencies
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#86 - Adapt to the latest pint
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#85 - Fix a critical mistake
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#84 - New interfaces
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#83 - A reaction between a 3d-diffusing molecle and 3d structure has the wrong dimensionality
Issue -
State: closed - Opened by kaizu over 4 years ago
#82 - Use "ver or later" notation in install_requires
Pull Request -
State: closed - Opened by kozo2 over 4 years ago
#81 - Add extras_require to setup.py
Pull Request -
State: closed - Opened by kozo2 over 4 years ago
#80 - Move from TravisCI to GitHub Actions
Pull Request -
State: closed - Opened by kozo2 over 4 years ago
#79 - Create Action for PyPI publishing
Pull Request -
State: closed - Opened by kozo2 over 4 years ago
#78 - arXiv DataSource
Issue -
State: open - Opened by kaizu over 4 years ago
#77 - Enable observables in plotting.plot_number_observer
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#76 - #16 Enable to export the PySB Model roughly
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#75 - Interface2
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#74 - Interface
Pull Request -
State: closed - Opened by kaizu over 4 years ago
#73 - Transition from setup.py to pyproject.toml
Issue -
State: closed - Opened by kozo2 over 4 years ago
- 1 comment
#72 - Replacing GPL-2.0 to GPL-3.0
Issue -
State: closed - Opened by kozo2 over 4 years ago
- 2 comments
#71 - Testing with sbml-test-suite
Issue -
State: open - Opened by kozo2 about 5 years ago
#70 - Enable abs
Pull Request -
State: closed - Opened by kaizu about 5 years ago
#69 - enable to show SGFRD world
Pull Request -
State: closed - Opened by ToruNiina about 5 years ago
#68 - :green_heart: use conda-forge on travis
Pull Request -
State: closed - Opened by ToruNiina about 5 years ago
#67 - :pencil2: fix typo
Pull Request -
State: closed - Opened by ToruNiina about 5 years ago
#66 - Integration tests with Papermill
Issue -
State: open - Opened by kozo2 almost 6 years ago
#65 - π Update README for ecell4_base version 2.0.0
Pull Request -
State: closed - Opened by kozo2 about 5 years ago
#64 - Prepare for building conda package
Pull Request -
State: closed - Opened by 0ncorhynchus about 5 years ago
#63 - prelude
Issue -
State: closed - Opened by kaizu about 5 years ago
Labels: proposal
#62 - Update ReactionRulePolicy
Pull Request -
State: closed - Opened by kaizu about 5 years ago
#61 - Creating Conda package
Issue -
State: closed - Opened by kozo2 about 5 years ago
#60 - Enable to set ReactionRule's attributes
Issue -
State: closed - Opened by kaizu about 5 years ago
- 1 comment
Labels: enhancement
#59 - Complete the web site.
Issue -
State: closed - Opened by kaizu almost 8 years ago
- 2 comments
#58 - Add tools for metabolic control analysis #57
Pull Request -
State: closed - Opened by kaizu about 5 years ago
#57 - Add tools for metabolic control analysis
Issue -
State: closed - Opened by kaizu about 5 years ago
- 1 comment
Labels: enhancement
#56 - Add a method to check units in a model
Pull Request -
State: closed - Opened by kaizu about 5 years ago
#55 - Fix bugs
Pull Request -
State: closed - Opened by kaizu about 5 years ago
#54 - can't load an sbml file
Issue -
State: closed - Opened by ortega2247 about 5 years ago
- 2 comments
Labels: bug
#53 - can't install ecell4 on Mac
Issue -
State: closed - Opened by ortega2247 about 5 years ago
- 2 comments
Labels: question
#52 - ax.set_aspect('equal') doesn't work in the latest matplotlib
Issue -
State: closed - Opened by kaizu about 5 years ago
- 1 comment
Labels: bug
#51 - installation problem
Issue -
State: closed - Opened by KSimi7 about 5 years ago
- 18 comments
Labels: question
#50 - Fix some bugs
Pull Request -
State: closed - Opened by kaizu over 5 years ago
#49 - Import data and fix some bugs
Pull Request -
State: closed - Opened by kaizu over 5 years ago
#48 - Avoid importing all from a module
Pull Request -
State: closed - Opened by kaizu over 5 years ago
Labels: bug
#47 - Contact map visualization with cytoscape.js
Issue -
State: closed - Opened by kozo2 almost 10 years ago
- 3 comments
Labels: enhancement
#46 - Contact map visualization with cytoscape.js
Issue -
State: closed - Opened by kozo2 over 5 years ago
- 3 comments
Labels: enhancement
#45 - Garuda datasource support
Issue -
State: open - Opened by kozo2 about 9 years ago
#44 - Prepare an example reproducing a model by RodrΓguez2006
Issue -
State: closed - Opened by kozo2 almost 9 years ago
- 1 comment
Labels: document
#43 - Jupyter notebook for metabolic profile visualization with Cytoscape
Issue -
State: closed - Opened by kozo2 over 8 years ago
- 2 comments
Labels: document
#42 - plotly.js support
Issue -
State: closed - Opened by kozo2 over 8 years ago
- 1 comment
Labels: enhancement
#41 - Provide Session class for encapsulating a single simulation
Issue -
State: closed - Opened by kaizu over 8 years ago
- 6 comments
Labels: enhancement, proposal
#40 - DataSource module for modeling in cooperation with databases
Issue -
State: open - Opened by kaizu over 8 years ago
- 2 comments
Labels: enhancement, proposal, working on
#39 - Mathematical functions in rate laws cannot be pre-defined
Issue -
State: open - Opened by kaizu over 8 years ago
- 1 comment
Labels: bug, invalid
#38 - Rule-based modeling for a Model with RateLaws
Issue -
State: open - Opened by kaizu over 8 years ago
Labels: enhancement
#37 - Refactor multiple plot functions
Issue -
State: closed - Opened by kaizu over 8 years ago
- 1 comment
Labels: refactoring
#36 - Save species_attributes into a SBML file
Issue -
State: open - Opened by kaizu over 8 years ago
Labels: enhancement
#35 - Support ipywidgets
Issue -
State: open - Opened by kaizu over 7 years ago
#34 - pytest for ecell4.datasource
Issue -
State: open - Opened by kozo2 over 7 years ago
- 1 comment
Labels: deployment, proposal
#33 - Parameter optimization tools
Issue -
State: open - Opened by kaizu over 7 years ago
- 1 comment
Labels: enhancement, proposal
#32 - Plot mean squre displacements with TrajectoryObserver
Issue -
State: open - Opened by kaizu over 7 years ago
Labels: enhancement
#31 - Simpler rule-based modeling
Issue -
State: open - Opened by kaizu almost 7 years ago
- 1 comment
Labels: enhancement, proposal
#30 - Refactor Python samples
Issue -
State: open - Opened by kaizu almost 7 years ago
- 3 comments
Labels: deployment, refactoring
#29 - Abbreviations
Issue -
State: open - Opened by kaizu over 6 years ago
- 1 comment
Labels: enhancement, proposal
#28 - Use ConfigParser to set parameters for ensemble
Issue -
State: closed - Opened by kaizu over 6 years ago
- 1 comment
Labels: enhancement, refactoring
#27 - Enable to use virtualenv or pyenv in ensemble
Issue -
State: open - Opened by kaizu over 6 years ago
- 1 comment
Labels: bug
#26 - Association with COBRApy
Issue -
State: open - Opened by kaizu over 6 years ago
Labels: enhancement, proposal
#25 - ExcludeReactants
Issue -
State: open - Opened by kaizu over 6 years ago
- 1 comment
Labels: enhancement, proposal
#24 - Adding Species attribute LaTeX table generate function to latex.py
Issue -
State: open - Opened by kozo2 over 6 years ago
- 1 comment
Labels: enhancement
#23 - An unit of the kinetic rate constant on surface
Issue -
State: closed - Opened by kaizu about 6 years ago
- 3 comments
Labels: invalid
#22 - Prepare an example using the ensemble feature
Issue -
State: closed - Opened by kaizu about 6 years ago
- 1 comment
Labels: document
#21 - Adding meda-data column to Species latex table
Issue -
State: open - Opened by kozo2 about 6 years ago
Labels: enhancement
#20 - Pipe to scopyon
Issue -
State: closed - Opened by kaizu about 6 years ago
- 1 comment
Labels: enhancement, proposal
#19 - Enable to split species attribute definition
Issue -
State: closed - Opened by kaizu about 6 years ago
- 5 comments
Labels: enhancement, proposal, spec change
#18 - Refactor ensemble_simulations and run_* functions
Issue -
State: closed - Opened by kaizu about 6 years ago
- 1 comment
Labels: refactoring, spec change
#17 - Enable reducer in ensemble functions
Issue -
State: open - Opened by kaizu about 6 years ago
#16 - Support PySB
Issue -
State: open - Opened by kaizu about 6 years ago
- 5 comments
Labels: enhancement
#15 - Enable to save an image in plot_world
Issue -
State: open - Opened by kaizu about 6 years ago
#14 - Use DRMAA to interface with different resource management systems
Issue -
State: open - Opened by kozo2 almost 6 years ago
#12 - azure_batch.py fails with pickle FileNotFoundError
Issue -
State: closed - Opened by kozo2 over 5 years ago
- 2 comments
#11 - Result object for run_simulation
Issue -
State: closed - Opened by kaizu over 5 years ago
- 1 comment
Labels: enhancement, proposal
#10 - Fix module names more
Pull Request -
State: closed - Opened by kaizu over 5 years ago
Labels: bug
#9 - Fix the module name
Pull Request -
State: closed - Opened by kaizu over 5 years ago
#8 - Prepare CIs
Issue -
State: open - Opened by kaizu over 5 years ago
Labels: deployment
#7 - Version information is duplicated
Issue -
State: closed - Opened by kaizu over 5 years ago
#6 - Update the warning message in unit
Issue -
State: closed - Opened by kaizu over 5 years ago
- 1 comment
#5 - Update README.md
Issue -
State: closed - Opened by kaizu over 5 years ago
Labels: deployment, document
#4 - Rename modules
Pull Request -
State: closed - Opened by kaizu over 5 years ago
#3 - Use ecell4_base
Issue -
State: closed - Opened by kaizu over 5 years ago
Labels: bug
#2 - SpatiocyteWorld.actual_volume changed its meaning
Issue -
State: open - Opened by kaizu over 5 years ago
Labels: bug
#1 - Add integration tests for spatiocyte
Issue -
State: open - Opened by 0ncorhynchus over 5 years ago