Ecosyste.ms: Issues

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GitHub / ebi-gene-expression-group/atlas-web-bulk issues and pull requests

#202 - [Chore] Upgrade to Java17

Pull Request - State: open - Opened by ke4 27 days ago
Labels: dependencies, Improvement

#201 - Upgrade Spring Framework to the latest one in Bulk

Issue - State: open - Opened by ke4 about 2 months ago

#200 - Releasing Bulk Expression Atlas into public environment

Issue - State: closed - Opened by ke4 about 2 months ago - 1 comment
Labels: enhancement, high priority, bulk

#199 - Releasing Bulk Expression Atlas into fallback environment

Issue - State: closed - Opened by ke4 about 2 months ago - 1 comment
Labels: enhancement, high priority, bulk

#198 - Upgrade Bulk to use SpringBoot

Issue - State: open - Opened by ke4 2 months ago

#196 - Upgrade Java to version 17 in Bulk

Issue - State: open - Opened by ke4 2 months ago
Labels: dependencies, Improvement

#194 - 'ves-hx-77' Bulk test environment got broken

Issue - State: closed - Opened by ke4 3 months ago - 1 comment

#193 - Preparation for the next Team Talk

Issue - State: closed - Opened by ke4 3 months ago

#192 - Fix Resources section in supplymentary information tab

Pull Request - State: closed - Opened by lingyun1010 3 months ago

#191 - [Chore] Add the latest publication to the web app's homepage

Pull Request - State: closed - Opened by ke4 3 months ago
Labels: enhancement, bulk

#190 - Add the latest publication to bulk's homepage

Issue - State: closed - Opened by ke4 3 months ago
Labels: enhancement, data, high priority, bulk

#189 - [Chore] Update gtex to the latest experiment

Pull Request - State: closed - Opened by ke4 3 months ago
Labels: enhancement, data, high priority, bulk

#188 - Update with the latest atlas-web-core submodule

Pull Request - State: closed - Opened by ke4 3 months ago - 1 comment

#187 - [Chore] Put back experiment design tab into the Experiment page

Pull Request - State: closed - Opened by ke4 3 months ago
Labels: high priority, Improvement, bulk

#186 - [Chore] Add back experiment design

Pull Request - State: closed - Opened by ke4 3 months ago - 1 comment
Labels: high priority, Improvement, bulk

#185 - Restore Experiment design tab in the Experiment page in Bulk Expression Atlas

Issue - State: closed - Opened by ke4 3 months ago
Labels: high priority, Improvement, bulk

#184 - Supplyment Information page not working on bulk with E-PROT experiments

Issue - State: closed - Opened by lingyun1010 4 months ago - 6 comments
Labels: bug

#183 - [Bugfix] Alternative view refactoring

Pull Request - State: closed - Opened by ke4 3 months ago
Labels: bug, high priority, Improvement, bulk

#182 - Replace the old GTEX experiment with the latest one in the Featured Experiments list

Issue - State: closed - Opened by ke4 3 months ago
Labels: enhancement, data, high priority, bulk

#181 - Load experiment design data into our local environment

Issue - State: open - Opened by ke4 4 months ago
Labels: Improvement, bulk

#180 - [Bugfix] Update codebase to latest atlas-web-core module

Pull Request - State: closed - Opened by ke4 4 months ago - 5 comments
Labels: bug, high priority, Improvement, bulk

#179 - [Bugfix] Update codebase to latest web core changes

Pull Request - State: closed - Opened by ke4 4 months ago
Labels: bug, high priority, bulk

#178 - [bugfix] Unittests broken by removed huge experiments

Pull Request - State: open - Opened by ke4 4 months ago

#177 - Missing alternate view of an experiment crashing the start up of our web apps

Issue - State: closed - Opened by ke4 5 months ago - 1 comment
Labels: high priority, Improvement, bulk

#176 - Chore - Update bulk with the latest webpack and its dependencies

Issue - State: open - Opened by ke4 5 months ago - 4 comments
Labels: dependencies, Improvement, bulk

#175 - [Hotfix] Add lately reverted features

Pull Request - State: closed - Opened by ke4 5 months ago - 1 comment
Labels: high priority, Improvement

#174 - [Chore] Revert all changes back before experiment design refactor

Pull Request - State: closed - Opened by ke4 5 months ago - 1 comment

#173 - [Chore] Revert exp design changes

Pull Request - State: closed - Opened by ke4 5 months ago - 1 comment

#172 - Chore/revert problematic commits

Pull Request - State: closed - Opened by ke4 5 months ago - 1 comment

#171 - The results are not appearing for some of the base experiments in bulk

Issue - State: closed - Opened by ke4 5 months ago - 6 comments
Labels: bug, bulk

#170 - [Chore] Fix docker compose for solr

Pull Request - State: closed - Opened by ke4 5 months ago
Labels: bug, Improvement

#169 - [HelpDesk] There seems a 1000-record limit for Differential expression

Issue - State: closed - Opened by ke4 6 months ago - 2 comments
Labels: HelpDesk

#168 - Improve build endpoint in Bulk Expression Atlas

Pull Request - State: closed - Opened by ke4 7 months ago - 1 comment
Labels: Improvement

#167 - Change the hardcoded URL for the GSA REST API in Bulk Expression Atlas

Issue - State: open - Opened by ke4 8 months ago - 1 comment
Labels: Needs GTL decision

#166 - Fix docker compose files for local env

Pull Request - State: closed - Opened by ke4 8 months ago - 8 comments
Labels: Improvement

#165 - Gene search result is not showing properly on bulk

Issue - State: closed - Opened by ke4 8 months ago - 1 comment
Labels: bug

#164 - Proteomics experiments plot view images are not appearing

Issue - State: closed - Opened by ke4 8 months ago - 5 comments
Labels: bug

#163 - Research why Gene enrichment tab is not working

Issue - State: open - Opened by ke4 8 months ago - 1 comment
Labels: bug

#162 - Remove RNA-Seq API publication reference from home page

Pull Request - State: closed - Opened by upendrakumbham 9 months ago - 2 comments

#160 - Gene set enrichment tab is not working properly in Bulk Expression Atlas

Issue - State: closed - Opened by upendrakumbham 9 months ago - 8 comments
Labels: bug, high priority

#159 - Remove the link to the RNA-Seq-er API from the tools tab

Issue - State: open - Opened by upendrakumbham 9 months ago
Labels: bug, high priority

#157 - Add CI environment for bulk Expression Atlas in GCP k8s cluster

Issue - State: open - Opened by ke4 12 months ago - 2 comments
Labels: enhancement

#155 - Gene Set Enrichment example in bulk returns 400

Issue - State: open - Opened by alfonsomunozpomer about 1 year ago
Labels: bug

#154 - Docker compose dev environment

Pull Request - State: closed - Opened by alfonsomunozpomer about 1 year ago - 1 comment

#153 - Chore – Create dev environment with Docker Compose

Pull Request - State: closed - Opened by alfonsomunozpomer about 1 year ago

#152 - Staging bulk application got broken

Issue - State: closed - Opened by upendrakumbham about 1 year ago

#151 - Experiment Design service

Pull Request - State: closed - Opened by haideriqbal over 1 year ago
Labels: enhancement

#150 - ves-pg-77 public server is down

Issue - State: closed - Opened by upendrakumbham over 1 year ago
Labels: bug

#149 - Use new API of atlas-react-fetch-loader

Pull Request - State: closed - Opened by alfonsomunozpomer over 1 year ago - 2 comments

#148 - Add EDTL landing page

Pull Request - State: closed - Opened by alfonsomunozpomer over 1 year ago

#147 - Chore: Move Bulk Expression Atlas to use Solr 8 and PostgreSQL 11

Pull Request - State: closed - Opened by ke4 over 1 year ago
Labels: enhancement

#146 - GXA bulk UI big

Issue - State: open - Opened by anilthanki over 1 year ago
Labels: bug

#145 - Incorrect link for current NAR paper

Pull Request - State: closed - Opened by pcm32 over 1 year ago

#144 - Update URL format for auto complete

Pull Request - State: closed - Opened by haideriqbal over 1 year ago - 1 comment
Labels: bug, high priority

#143 - Replace EFO suggestions with BioStudies-ArrayExpress

Issue - State: closed - Opened by ke4 over 1 year ago
Labels: bug, high priority

#142 - Add a more sophisticated mechanism to link experiments

Pull Request - State: closed - Opened by lingyun1010 almost 2 years ago - 5 comments

#141 - Bulk move to Solr 8.7 and PostgreSQL 11

Issue - State: open - Opened by pcm32 almost 2 years ago - 2 comments

#140 - Add a more sophisticated mechanism to link experiments

Issue - State: closed - Opened by lingyun1010 almost 2 years ago - 6 comments
Labels: high priority

#139 - Add a test for proteomics differential experiment

Pull Request - State: closed - Opened by lingyun1010 almost 2 years ago

#138 - Update publication on license page

Pull Request - State: closed - Opened by haideriqbal almost 2 years ago

#137 - Remove survey request in the Information Banner

Pull Request - State: closed - Opened by alfonsomunozpomer almost 2 years ago

#136 - Remove survey request in the information banner

Issue - State: open - Opened by alfonsomunozpomer almost 2 years ago

#135 - 131 Fix layout of the Publications box in the home page

Pull Request - State: closed - Opened by alfonsomunozpomer almost 2 years ago

#134 - Remove square bracket around the secondary accession

Pull Request - State: closed - Opened by lingyun1010 almost 2 years ago

#131 - Fix layout of Publications in the home page

Issue - State: closed - Opened by alfonsomunozpomer almost 2 years ago
Labels: enhancement

#129 - CLI call for creating / updating experiments

Pull Request - State: closed - Opened by pcm32 about 2 years ago - 2 comments
Labels: enhancement

#127 - Add missing check for Proteomics Differential experiment

Pull Request - State: closed - Opened by haideriqbal about 2 years ago - 1 comment

#126 - Differential proteomics zipped download functionality is broken

Issue - State: open - Opened by pcm32 about 2 years ago
Labels: bug, in-pivotal

#125 - No initial differential result on condition search

Issue - State: open - Opened by pcm32 over 2 years ago
Labels: bug

#124 - Aliases and collections need to be passed separately.

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 1 comment

#120 - Remove FTP tar ball link

Pull Request - State: closed - Opened by haideriqbal over 2 years ago - 1 comment

#118 - Bugfix #178882857 – Friendlier Solr errors

Pull Request - State: closed - Opened by alfonsomunozpomer over 2 years ago

#116 - Feature/181187747 integrate bulk banner component

Pull Request - State: closed - Opened by upendrakumbham over 2 years ago - 2 comments

#115 - Feature/181094306 add unprocessed protein groups file

Pull Request - State: closed - Opened by lingyun1010 over 2 years ago - 1 comment

#114 - Non homogenous downloads

Issue - State: open - Opened by pcm32 over 2 years ago

#113 - Feature #181094330 – Change bioentities collection alias to atlas-bioentities

Pull Request - State: closed - Opened by alfonsomunozpomer over 2 years ago - 1 comment

#112 - Avoids errors due to non parseable integer elements OT percentile ranks

Pull Request - State: open - Opened by pcm32 over 2 years ago - 1 comment
Labels: enhancement

#111 - Complete experiment types on different locations

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 1 comment

#110 - Don't use dedupe processor on bulk analytics

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 1 comment

#109 - Use web core branch with max_pool_size setting

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 1 comment

#108 - Uncovers unique elements in data and/or metadata

Pull Request - State: closed - Opened by pcm32 over 2 years ago

#107 - Fix github actions

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 1 comment

#106 - Feature #180537199 – Import proteomics differential experiments

Pull Request - State: closed - Opened by alfonsomunozpomer over 2 years ago - 5 comments

#105 - Move help pages to github

Pull Request - State: closed - Opened by haideriqbal over 2 years ago

#103 - Feature/180081614 bump-sub-module

Pull Request - State: closed - Opened by upendrakumbham over 2 years ago

#102 - Just Bump submodule

Pull Request - State: closed - Opened by haideriqbal over 2 years ago