Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ebi-gene-expression-group/atlas-web-bulk issues and pull requests

#216 - Synch the build info controller with SCXA

Pull Request - State: closed - Opened by ke4 17 days ago
Labels: Improvement

#215 - Filter external resources belongs to specific archive

Pull Request - State: closed - Opened by ke4 18 days ago
Labels: bug

#214 - Refactor experiment's external resource handling

Pull Request - State: closed - Opened by ke4 24 days ago
Labels: bug

#213 - add E-CURD-146 to EDTL collection page

Pull Request - State: open - Opened by pmb59 30 days ago
Labels: enhancement

#212 - [QuickFix] Remove unneeded trailing slash from resource link

Pull Request - State: closed - Opened by ke4 30 days ago
Labels: bug

#211 - Make collections dynamically using DB tables

Issue - State: open - Opened by ke4 about 1 month ago

#210 - Add E-CURD-146 to the EDTL collection

Issue - State: open - Opened by ke4 about 1 month ago
Labels: enhancement

#209 - Fix resources links for EGA datasets

Issue - State: closed - Opened by ke4 about 1 month ago - 5 comments
Labels: bug

#208 - Chore - ves-hx-77 migration from Hinxton to Harlow

Issue - State: open - Opened by ke4 about 1 month ago
Labels: Infrastructure

#207 - Automate the monitoring for Bulk expression atlas

Issue - State: open - Opened by ke4 about 1 month ago
Labels: Improvement, technical debt

#206 - Review @Disabled tests and fix them

Issue - State: open - Opened by ke4 about 1 month ago
Labels: bug, technical debt

#205 - Simplify and refactor HealthCheck in bulk web app

Issue - State: open - Opened by ke4 2 months ago
Labels: Improvement

#203 - [Chore] Bulk - Fix experiment design's memory issue

Pull Request - State: closed - Opened by ke4 5 months ago
Labels: bug, high priority, Improvement

#202 - [Chore] Upgrade to Java17

Pull Request - State: open - Opened by ke4 5 months ago
Labels: dependencies, technical debt

#201 - Upgrade Spring Framework to the latest one in Bulk

Issue - State: open - Opened by ke4 6 months ago
Labels: dependencies, technical debt

#200 - Releasing Bulk Expression Atlas into public environment

Issue - State: closed - Opened by ke4 6 months ago - 1 comment
Labels: enhancement, high priority, bulk

#199 - Releasing Bulk Expression Atlas into fallback environment

Issue - State: closed - Opened by ke4 6 months ago - 1 comment
Labels: enhancement, high priority, bulk

#198 - Upgrade Bulk to use SpringBoot

Issue - State: open - Opened by ke4 7 months ago
Labels: Improvement, technical debt

#197 - Replace JSPs with a more up-to-date view technology in Bulk

Issue - State: open - Opened by ke4 7 months ago
Labels: Improvement, technical debt

#196 - Upgrade Java to version 17 in Bulk

Issue - State: open - Opened by ke4 7 months ago
Labels: dependencies, technical debt

#194 - 'ves-hx-77' Bulk test environment got broken

Issue - State: closed - Opened by ke4 7 months ago - 1 comment

#193 - Preparation for the next Team Talk

Issue - State: closed - Opened by ke4 7 months ago

#192 - Fix Resources section in supplymentary information tab

Pull Request - State: closed - Opened by lingyun1010 7 months ago

#191 - [Chore] Add the latest publication to the web app's homepage

Pull Request - State: closed - Opened by ke4 7 months ago
Labels: enhancement, bulk

#190 - Add the latest publication to bulk's homepage

Issue - State: closed - Opened by ke4 8 months ago
Labels: enhancement, data, high priority, bulk

#189 - [Chore] Update gtex to the latest experiment

Pull Request - State: closed - Opened by ke4 8 months ago
Labels: enhancement, data, high priority, bulk

#188 - Update with the latest atlas-web-core submodule

Pull Request - State: closed - Opened by ke4 8 months ago - 1 comment

#187 - [Chore] Put back experiment design tab into the Experiment page

Pull Request - State: closed - Opened by ke4 8 months ago
Labels: high priority, Improvement, bulk

#186 - [Chore] Add back experiment design

Pull Request - State: closed - Opened by ke4 8 months ago - 1 comment
Labels: high priority, Improvement, bulk

#185 - Restore Experiment design tab in the Experiment page in Bulk Expression Atlas

Issue - State: closed - Opened by ke4 8 months ago
Labels: high priority, Improvement, bulk

#184 - Supplyment Information page not working on bulk with E-PROT experiments

Issue - State: closed - Opened by lingyun1010 9 months ago - 6 comments
Labels: bug

#183 - [Bugfix] Alternative view refactoring

Pull Request - State: closed - Opened by ke4 8 months ago
Labels: bug, high priority, Improvement, bulk

#182 - Replace the old GTEX experiment with the latest one in the Featured Experiments list

Issue - State: closed - Opened by ke4 8 months ago
Labels: enhancement, data, high priority, bulk

#181 - Load experiment design data into our local environment

Issue - State: open - Opened by ke4 8 months ago
Labels: Improvement, bulk

#180 - [Bugfix] Update codebase to latest atlas-web-core module

Pull Request - State: closed - Opened by ke4 8 months ago - 5 comments
Labels: bug, high priority, Improvement, bulk

#179 - [Bugfix] Update codebase to latest web core changes

Pull Request - State: closed - Opened by ke4 9 months ago
Labels: bug, high priority, bulk

#178 - [bugfix] Unittests broken by removed huge experiments

Pull Request - State: open - Opened by ke4 9 months ago

#177 - Missing alternate view of an experiment crashing the start up of our web apps

Issue - State: closed - Opened by ke4 9 months ago - 1 comment
Labels: high priority, Improvement, bulk

#176 - Chore - Update bulk with the latest webpack and its dependencies

Issue - State: open - Opened by ke4 9 months ago - 4 comments
Labels: dependencies, technical debt

#175 - [Hotfix] Add lately reverted features

Pull Request - State: closed - Opened by ke4 9 months ago - 1 comment
Labels: high priority, Improvement

#174 - [Chore] Revert all changes back before experiment design refactor

Pull Request - State: closed - Opened by ke4 9 months ago - 1 comment

#173 - [Chore] Revert exp design changes

Pull Request - State: closed - Opened by ke4 9 months ago - 1 comment

#172 - Chore/revert problematic commits

Pull Request - State: closed - Opened by ke4 9 months ago - 1 comment

#171 - The results are not appearing for some of the base experiments in bulk

Issue - State: closed - Opened by ke4 10 months ago - 6 comments
Labels: bug, bulk

#170 - [Chore] Fix docker compose for solr

Pull Request - State: closed - Opened by ke4 10 months ago
Labels: bug, Improvement

#169 - [HelpDesk] There seems a 1000-record limit for Differential expression

Issue - State: closed - Opened by ke4 11 months ago - 2 comments
Labels: HelpDesk

#168 - Improve build endpoint in Bulk Expression Atlas

Pull Request - State: closed - Opened by ke4 11 months ago - 1 comment
Labels: Improvement

#167 - Change the hardcoded URL for the GSA REST API in Bulk Expression Atlas

Issue - State: open - Opened by ke4 almost 1 year ago - 1 comment
Labels: Needs GTL decision

#166 - Fix docker compose files for local env

Pull Request - State: closed - Opened by ke4 about 1 year ago - 8 comments
Labels: Improvement

#165 - Gene search result is not showing properly on bulk

Issue - State: closed - Opened by ke4 about 1 year ago - 1 comment
Labels: bug

#164 - Proteomics experiments plot view images are not appearing

Issue - State: closed - Opened by ke4 about 1 year ago - 5 comments
Labels: bug

#163 - Research why Gene enrichment tab is not working

Issue - State: open - Opened by ke4 about 1 year ago - 1 comment
Labels: bug

#162 - Remove RNA-Seq API publication reference from home page

Pull Request - State: closed - Opened by upendrakumbham about 1 year ago - 2 comments

#160 - Gene set enrichment tab is not working properly in Bulk Expression Atlas

Issue - State: closed - Opened by upendrakumbham about 1 year ago - 8 comments
Labels: bug, high priority

#159 - Remove the link to the RNA-Seq-er API from the tools tab

Issue - State: open - Opened by upendrakumbham about 1 year ago
Labels: bug, high priority

#158 - Add Jenkins CI environment for bulk Expression Atlas in GCP k8s cluster

Pull Request - State: open - Opened by ke4 over 1 year ago

#157 - Add CI environment for bulk Expression Atlas in GCP k8s cluster

Issue - State: open - Opened by ke4 over 1 year ago - 2 comments
Labels: Improvement, technical debt

#155 - Gene Set Enrichment example in bulk returns 400

Issue - State: open - Opened by alfonsomunozpomer over 1 year ago
Labels: bug

#154 - Docker compose dev environment

Pull Request - State: closed - Opened by alfonsomunozpomer over 1 year ago - 1 comment

#153 - Chore – Create dev environment with Docker Compose

Pull Request - State: closed - Opened by alfonsomunozpomer over 1 year ago

#152 - Staging bulk application got broken

Issue - State: closed - Opened by upendrakumbham over 1 year ago

#151 - Experiment Design service

Pull Request - State: closed - Opened by haideriqbal over 1 year ago
Labels: enhancement

#150 - ves-pg-77 public server is down

Issue - State: closed - Opened by upendrakumbham almost 2 years ago
Labels: bug

#149 - Use new API of atlas-react-fetch-loader

Pull Request - State: closed - Opened by alfonsomunozpomer almost 2 years ago - 2 comments

#148 - Add EDTL landing page

Pull Request - State: closed - Opened by alfonsomunozpomer almost 2 years ago

#147 - Chore: Move Bulk Expression Atlas to use Solr 8 and PostgreSQL 11

Pull Request - State: closed - Opened by ke4 almost 2 years ago
Labels: enhancement

#146 - GXA bulk UI big

Issue - State: open - Opened by anilthanki about 2 years ago
Labels: bug

#145 - Incorrect link for current NAR paper

Pull Request - State: closed - Opened by pcm32 about 2 years ago

#144 - Update URL format for auto complete

Pull Request - State: closed - Opened by haideriqbal about 2 years ago - 1 comment
Labels: bug, high priority

#143 - Replace EFO suggestions with BioStudies-ArrayExpress

Issue - State: closed - Opened by ke4 about 2 years ago
Labels: bug, high priority

#142 - Add a more sophisticated mechanism to link experiments

Pull Request - State: closed - Opened by lingyun1010 about 2 years ago - 5 comments

#141 - Bulk move to Solr 8.7 and PostgreSQL 11

Issue - State: open - Opened by pcm32 about 2 years ago - 2 comments

#140 - Add a more sophisticated mechanism to link experiments

Issue - State: closed - Opened by lingyun1010 about 2 years ago - 6 comments
Labels: high priority

#139 - Add a test for proteomics differential experiment

Pull Request - State: closed - Opened by lingyun1010 about 2 years ago

#138 - Update publication on license page

Pull Request - State: closed - Opened by haideriqbal about 2 years ago

#137 - Remove survey request in the Information Banner

Pull Request - State: closed - Opened by alfonsomunozpomer over 2 years ago

#136 - Remove survey request in the information banner

Issue - State: open - Opened by alfonsomunozpomer over 2 years ago

#135 - 131 Fix layout of the Publications box in the home page

Pull Request - State: closed - Opened by alfonsomunozpomer over 2 years ago

#134 - Remove square bracket around the secondary accession

Pull Request - State: closed - Opened by lingyun1010 over 2 years ago

#131 - Fix layout of Publications in the home page

Issue - State: closed - Opened by alfonsomunozpomer over 2 years ago
Labels: enhancement

#129 - CLI call for creating / updating experiments

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 2 comments
Labels: enhancement

#127 - Add missing check for Proteomics Differential experiment

Pull Request - State: closed - Opened by haideriqbal over 2 years ago - 1 comment

#126 - Differential proteomics zipped download functionality is broken

Issue - State: open - Opened by pcm32 over 2 years ago
Labels: bug

#125 - No initial differential result on condition search

Issue - State: open - Opened by pcm32 over 2 years ago
Labels: bug

#124 - Aliases and collections need to be passed separately.

Pull Request - State: closed - Opened by pcm32 over 2 years ago - 1 comment

#120 - Remove FTP tar ball link

Pull Request - State: closed - Opened by haideriqbal almost 3 years ago - 1 comment

#118 - Bugfix #178882857 – Friendlier Solr errors

Pull Request - State: closed - Opened by alfonsomunozpomer almost 3 years ago

#116 - Feature/181187747 integrate bulk banner component

Pull Request - State: closed - Opened by upendrakumbham almost 3 years ago - 2 comments