Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ebi-ait/geo_to_hca issues and pull requests
#46 - Bump pygments from 2.13.0 to 2.15.0
Pull Request -
State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#45 - Bump requests from 2.28.1 to 2.31.0
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#44 - Fix hca_bionetworks property name
Pull Request -
State: closed - Opened by arschat over 1 year ago
#43 - dcp-908 error messages, cleanup, testing
Pull Request -
State: open - Opened by amnonkhen over 1 year ago
- 1 comment
#42 - handle long requests with POST
Pull Request -
State: open - Opened by ESapenaVentura over 1 year ago
#41 - Sanitise Requirements, match ingest-client
Pull Request -
State: closed - Opened by MightyAx almost 2 years ago
#40 - Bump numpy from 1.19.5 to 1.22.0
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#39 - dcp-855 error handling when accession is not found
Pull Request -
State: closed - Opened by amnonkhen about 2 years ago
#38 - dcp-805 dcp-827 sra import bug
Pull Request -
State: closed - Opened by amnonkhen about 2 years ago
- 1 comment
#37 - geo_to_hca: Updated hca template to reflect schema updates (treatment protocol)
Pull Request -
State: closed - Opened by ami-day about 2 years ago
- 8 comments
#36 - Fixes for dcp 707 and some refactoring
Pull Request -
State: closed - Opened by jacobwindsor over 2 years ago
- 1 comment
#35 - Allow usage of SRP accessions directly
Pull Request -
State: closed - Opened by jacobwindsor over 2 years ago
#34 - Show error message if srp is nonexistent
Pull Request -
State: closed - Opened by jacobwindsor over 2 years ago
#33 - Dcp-650: update spreadsheet template
Pull Request -
State: closed - Opened by yusra-haider over 2 years ago
#32 - dcp-142 geo to hca - pypi package
Pull Request -
State: closed - Opened by amnonkhen over 2 years ago
#31 - Fix request to get fastq info from ENA
Pull Request -
State: closed - Opened by aaclan-ebi almost 3 years ago
- 2 comments
#30 - Add option to retrieve metadata in the absence of an SRA study accession
Issue -
State: closed - Opened by ami-day almost 3 years ago
- 1 comment
Labels: enhancement
#29 - Library preparation incorrect when converting GSE130708
Issue -
State: open - Opened by mshadbolt over 3 years ago
Labels: Submission
#28 - Added option to provide ERP study accession
Pull Request -
State: closed - Opened by ami-day over 3 years ago
#27 - Bug when showing paper titles
Issue -
State: open - Opened by ESapenaVentura over 3 years ago
Labels: bug
#26 - Refactoring code: geo to hca
Pull Request -
State: closed - Opened by ami-day over 3 years ago
- 1 comment
#25 - Improve speed
Pull Request -
State: closed - Opened by ami-day over 3 years ago
- 2 comments
#24 - Updated script to include an option to skip searching for fastq files…
Pull Request -
State: closed - Opened by ami-day over 3 years ago
- 1 comment
Labels: enhancement
#23 - Dissociation protocol tab is missing from output spreadsheet
Issue -
State: closed - Opened by ami-day almost 4 years ago
- 1 comment
Labels: bug, enhancement
#22 - Fixed requirements/deleted some unused libraries
Pull Request -
State: closed - Opened by ESapenaVentura almost 4 years ago
#21 - issue installing sra requirements with pip and pip3
Issue -
State: closed - Opened by rachadele almost 4 years ago
- 2 comments
#20 - Ensure all modules are in the template spreadsheet
Issue -
State: closed - Opened by mshadbolt about 4 years ago
- 2 comments
#19 - [FEATURE] Add functionality to create one combined spreadsheet rather than separate ones
Issue -
State: closed - Opened by mshadbolt about 4 years ago
- 1 comment
Labels: enhancement
#18 - remove sra-tools as a requirement
Pull Request -
State: closed - Opened by mshadbolt about 4 years ago
- 1 comment
#17 - Add function to detect correct accession to use in a Superseries
Issue -
State: closed - Opened by ami-day over 4 years ago
- 1 comment
#16 - Add 'GSM" sample ids to 'specimen from organism' and 'cell suspension' tabs
Issue -
State: closed - Opened by ami-day over 4 years ago
- 1 comment
#15 - Add functionality for pre-filling specific fields according to Drop-seq and Smart-seq2 technologies
Issue -
State: closed - Opened by ami-day over 4 years ago
- 2 comments
#14 - Sort spreadsheet tabs by the same accession ids
Issue -
State: closed - Opened by ami-day over 4 years ago
- 1 comment
#13 - [FEATURE] Add INSDC project and study accessions to Project tab
Issue -
State: closed - Opened by mshadbolt over 4 years ago
- 2 comments
#12 - [BUG] Write the correct lane_index and bundling
Issue -
State: closed - Opened by ESapenaVentura over 4 years ago
- 1 comment
Labels: bug
#11 - [FEATURE] format and input authors for the publication tab
Issue -
State: closed - Opened by mshadbolt over 4 years ago
- 9 comments
#10 - Added linking function for library_prep and seq protocols. Fixes #7
Pull Request -
State: closed - Opened by ESapenaVentura over 4 years ago
#9 - Fixed Fastq filename Issue and some other errors. Fixes #6
Pull Request -
State: closed - Opened by ESapenaVentura over 4 years ago
#8 - Linted the code for apps/geo_to_hca.py
Pull Request -
State: closed - Opened by ESapenaVentura over 4 years ago
Labels: enhancement
#7 - Link protocol ids to cell suspension ids in geo_to_hca.py script
Issue -
State: closed - Opened by ami-day over 4 years ago
Labels: enhancement
#6 - Address missing fastq file names in apps/geo_to_hca.py script
Issue -
State: closed - Opened by ami-day over 4 years ago
- 1 comment
Labels: enhancement
#5 - Lint repository code to abide to PEP 8
Issue -
State: open - Opened by ESapenaVentura over 4 years ago
Labels: Submission, non functional, User Story, FAIRification, UX design
#4 - Add parser to apps/geo_to_hca.py script
Issue -
State: closed - Opened by ESapenaVentura over 4 years ago
- 4 comments
Labels: enhancement
#3 - Update repository documentation
Issue -
State: closed - Opened by ESapenaVentura over 4 years ago
- 3 comments
Labels: documentation
#2 - Fix issue with spreadsheet names not showing correctly
Issue -
State: closed - Opened by ESapenaVentura over 4 years ago
- 3 comments
Labels: bug
#1 - Changes to code in App and added user-friendly template.
Pull Request -
State: closed - Opened by ESapenaVentura over 4 years ago
- 1 comment
Labels: enhancement