earthlab/rslurm issues and pull requests

#85 - Convert DOS line breaks to Unix

Issue - State: open - Opened by qdread about 1 year ago

#84 - Line endings

Issue - State: closed - Opened by mhesselbarth about 1 year ago - 4 comments

#83 - Is this suitable for rslurm?

Issue - State: open - Opened by garyzhubc about 1 year ago - 1 comment

#82 - Allow for slurm_options without arguments

Issue - State: closed - Opened by f2il-afisher over 1 year ago - 2 comments

#81 - How can I requeue a failed job using rslurm?

Issue - State: open - Opened by YEnthalpy almost 2 years ago - 1 comment

#80 - README touchup

Pull Request - State: open - Opened by itcarroll almost 2 years ago

#79 - Updating pkgdown site

Pull Request - State: closed - Opened by Ckster almost 2 years ago

#78 - Updating README

Pull Request - State: closed - Opened by Ckster almost 2 years ago

#77 - Earthlab update

Pull Request - State: closed - Opened by Ckster almost 2 years ago

#76 - wait_for_job, argument is of length zero

Issue - State: closed - Opened by nitishnih about 2 years ago - 2 comments

#75 - changed wait_for_job to not use the --wait sbatch flag

Pull Request - State: closed - Opened by wresch over 2 years ago - 7 comments

#74 - Specify number of cores per node for parallel MCMC chains on each node

Issue - State: open - Opened by kgoldfeld about 3 years ago - 10 comments

#73 - Size of #SBATCH --array larger than MaxSubmitJobs

Issue - State: closed - Opened by mhesselbarth over 3 years ago - 3 comments

#72 - Jobs waiting in queue will produce an error in get_job_status

Issue - State: closed - Opened by LizaDarrous over 3 years ago - 3 comments

#71 - Docker image with Slurm + R

Issue - State: open - Opened by gvegayon over 3 years ago - 1 comment

#70 - enable setting jobarraytasklimit

Issue - State: closed - Opened by qdread over 3 years ago - 1 comment

#69 - Fix issues so that Windows checks pass

Pull Request - State: closed - Opened by qdread almost 4 years ago - 1 comment

#68 - rslurm fails CRAN checks on Windows

Issue - State: closed - Opened by qdread almost 4 years ago - 3 comments

#67 - Unable to retrieve output

Issue - State: closed - Opened by ekernf01 almost 4 years ago - 6 comments

#66 - slurm_call fails if no arguments passed to function

Issue - State: closed - Opened by qdread almost 4 years ago - 1 comment

#65 - use sbatch instead of srun to block execution

Pull Request - State: closed - Opened by ChristopherBarrington almost 4 years ago - 11 comments

#64 - waiting for jobs when default partition is not interactive

Issue - State: closed - Opened by ChristopherBarrington almost 4 years ago - 3 comments

#63 - `slurm_map` not exported on CRAN version

Issue - State: closed - Opened by aloy almost 4 years ago - 2 comments

#62 - Question: Issue rslurm jobs from outside slurm compute nodes?

Issue - State: closed - Opened by thistleknot about 4 years ago - 5 comments

#61 - Trouble submitting jobs with multithreaded R function

Issue - State: closed - Opened by naglemi about 4 years ago - 3 comments

#60 - Fixes missing comma in contributor list

Pull Request - State: closed - Opened by benfasoli over 4 years ago - 1 comment

#59 - Add the missing comma

Pull Request - State: closed - Opened by Kraks over 4 years ago - 1 comment

#58 - wait_for_job does not actually wait

Issue - State: closed - Opened by PikalaxALT over 4 years ago - 4 comments
Labels: bug

#57 - Support mc.cores greater than number of physical cores

Pull Request - State: closed - Opened by benfasoli over 4 years ago - 5 comments

#56 - Support mc.cores greater than number of physical cores

Issue - State: closed - Opened by benfasoli over 4 years ago - 1 comment

#55 - Jobid feature

Pull Request - State: closed - Opened by grabear over 4 years ago - 7 comments

#54 - Feature Request: Return the JobID in the slurm_job object.

Issue - State: closed - Opened by grabear over 4 years ago - 4 comments

#53 - The `libPaths` argument to `slurm_apply` reverses the order of libraries used

Issue - State: closed - Opened by Patrick330 almost 5 years ago - 3 comments

#52 - capability to rerun failed tasks

Issue - State: open - Opened by qdread almost 5 years ago

#51 - Edit error catching in slurm_apply and slurm_call

Pull Request - State: closed - Opened by qdread almost 5 years ago

#50 - slurm_call and related functions throw error if arguments not in formals() are passed

Issue - State: closed - Opened by qdread almost 5 years ago - 1 comment

#49 - Updated local_slurm_array()

Pull Request - State: closed - Opened by qdread about 5 years ago

#48 - new function slurm_map() and add support for MoreArgs

Pull Request - State: closed - Opened by qdread about 5 years ago

#47 - Custom templates

Pull Request - State: closed - Opened by pmarchand1 about 5 years ago - 1 comment

#46 - compare to "slurmR" package

Issue - State: open - Opened by reblake over 5 years ago - 1 comment

#45 - rscript_path as optional parameter

Pull Request - State: closed - Opened by polvanrijn over 5 years ago - 2 comments

#44 - IGNORE PLEASE: erroneous pull request

Pull Request - State: closed - Opened by patricksykes over 5 years ago - 1 comment

#43 - make pkgdown site for easier info access

Issue - State: closed - Opened by reblake over 5 years ago - 1 comment
Labels: low priority

#42 - rslurm improvements

Issue - State: closed - Opened by Tazovsky over 5 years ago - 3 comments

#41 - get_slurm_out

Issue - State: closed - Opened by mcuma over 5 years ago - 1 comment

#40 - no dataframe created by get_slurm_out when RPostgres_1.1.1 loaded

Issue - State: closed - Opened by reblake over 5 years ago - 1 comment

#39 - .RDS files

Issue - State: closed - Opened by jennysjaarda over 5 years ago - 5 comments
Labels: bug

#38 - Adds functions for dynamically handling oom-killed jobs.

Pull Request - State: open - Opened by gjgetzinger almost 6 years ago - 1 comment

#37 - Replace print_job_status

Pull Request - State: closed - Opened by pmarchand1 about 6 years ago

#36 - Set cpus-per-tasks in sbatch script

Pull Request - State: closed - Opened by sebschub about 6 years ago - 5 comments

#35 - Does rslurm play well with Rcpp?

Issue - State: closed - Opened by lukeholman about 6 years ago - 3 comments

#34 - Modify within-cluster parallel backend for dynamic load balancing

Pull Request - State: closed - Opened by benfasoli over 6 years ago - 3 comments

#33 - No specification on cpus-per-task in the submit.sh

Issue - State: closed - Opened by zhiiiyang over 6 years ago - 2 comments

#32 - no slurm workload manager found

Issue - State: closed - Opened by behnam326 over 6 years ago - 3 comments

#31 - compare to "future" package

Issue - State: closed - Opened by itcarroll over 6 years ago - 1 comment

#30 - issue-29: add parallel to get_slurm_out

Pull Request - State: closed - Opened by daynefiler almost 7 years ago - 2 comments

#29 - Add parallel parameter to get_slurm_out

Issue - State: closed - Opened by daynefiler almost 7 years ago - 2 comments

#28 - problems specifying a non-default cluster

Issue - State: closed - Opened by dtenenba almost 7 years ago - 7 comments

#27 - add_objects doesn't save local variables

Issue - State: closed - Opened by asmagen about 7 years ago - 3 comments

#26 - slurm_options for effectively disabling mcmapply?

Issue - State: closed - Opened by jgrn307 about 7 years ago - 2 comments

#25 - add_objects not working?

Issue - State: closed - Opened by jgrn307 about 7 years ago - 9 comments

#24 - Custom templates

Pull Request - State: closed - Opened by jgrn307 about 7 years ago - 1 comment

#23 - Tweak for specifying templates/Rscript location

Issue - State: closed - Opened by jgrn307 about 7 years ago - 3 comments

#22 - Singularity question...

Issue - State: closed - Opened by jgrn307 about 7 years ago - 4 comments

#21 - slurm_apply doesn't use multiple nodes.

Issue - State: closed - Opened by SeonghunCho over 7 years ago - 2 comments

#20 - Use sensible default values for nodes in slurm_apply

Issue - State: closed - Opened by statquant over 7 years ago - 1 comment

#19 - Allow user to use different templates in slurm_apply

Issue - State: closed - Opened by statquant over 7 years ago - 2 comments

#18 - display better print_job_status

Issue - State: closed - Opened by statquant over 7 years ago

#17 - Execute slurm_apply() locally when submit is FALSE

Issue - State: closed - Opened by wlandau-lilly over 7 years ago - 9 comments

#16 - Ellipsis argument to slurm_apply()

Issue - State: closed - Opened by wlandau-lilly over 7 years ago - 8 comments

#15 - Add option to add lines to .sh file?

Issue - State: closed - Opened by kendonB over 7 years ago - 6 comments

#14 - Error on bytecoded functions

Issue - State: closed - Opened by trahelyk over 7 years ago - 4 comments

#13 - Improve handling of environments

Pull Request - State: closed - Opened by itcarroll over 7 years ago - 2 comments

#12 - print_job_status prints like crazy for no reason

Issue - State: closed - Opened by statquant over 7 years ago - 1 comment

#11 - fixed two namespace bugs

Pull Request - State: closed - Opened by rcorty over 7 years ago - 1 comment

#10 - Using rslurm with RefClasses

Issue - State: closed - Opened by rcorty over 7 years ago - 1 comment

#9 - Add log file functionality for troubleshooting jobs

Issue - State: closed - Opened by mshelley1 over 7 years ago - 1 comment

#8 - get_slurm_out fails on long/big jobs

Issue - State: closed - Opened by rcorty almost 8 years ago - 8 comments

#7 - wait behavior when dependency has already completed

Issue - State: closed - Opened by itcarroll almost 8 years ago

#6 - allow Spatial*DataFrame as param

Issue - State: closed - Opened by itcarroll almost 8 years ago - 3 comments

#5 - Add library location specification

Pull Request - State: closed - Opened by benfasoli almost 8 years ago - 4 comments

#4 - Extensions

Pull Request - State: closed - Opened by itcarroll almost 8 years ago

#3 - change RData extension to rds for seriealized data

Issue - State: closed - Opened by itcarroll about 8 years ago - 1 comment

#2 - Use SLURM dependencies to wait for jobs before getting output

Pull Request - State: closed - Opened by itcarroll about 8 years ago

#1 - CRAN submission/release

Issue - State: closed - Opened by bmcgough almost 9 years ago - 3 comments

GitHub / earthlab/rslurm issues and pull requests