Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / earmingol/cell2cell issues and pull requests

#63 - module 'seaborn.categorical' has no attribute '_BoxPlotter'

Issue - State: open - Opened by LJZYaaa about 2 months ago - 2 comments

#62 - cell2cell ReadTheDocs API Reference

Issue - State: open - Opened by IsaacUtah1379 3 months ago - 1 comment

#61 - Clarification of handling multiple samples in cell2cell

Issue - State: open - Opened by georginaalbadri 3 months ago - 1 comment

#59 - inability to import cell2cell from within liana compatible environment

Issue - State: closed - Opened by whitneyt1 4 months ago - 11 comments

#58 - c2c.analysis.run_tensor_cell2cell_pipeline

Issue - State: closed - Opened by Iammaai 5 months ago - 14 comments

#57 - Too few dimensions in the tensor (issue)

Issue - State: open - Opened by AtheerAS 5 months ago - 1 comment

#56 - Conflict to install cell2cell

Issue - State: closed - Opened by Capiques 5 months ago - 2 comments

#55 - TypeError: metaclass conflict with cell2cell in reticulate

Issue - State: open - Opened by rbutleriii 6 months ago - 3 comments

#54 - Problems with the tensor pipeline at the Tensor Factorization step

Issue - State: closed - Opened by ludicaa 6 months ago - 4 comments

#53 - Example not working

Issue - State: open - Opened by imerelli 6 months ago - 1 comment

#51 - Spatial LIANA x cell2cell analysis in R

Issue - State: closed - Opened by Qirongmao97 7 months ago - 3 comments

#50 - Reduced number of cell types in factorisation output

Issue - State: open - Opened by georginaalbadri 7 months ago - 1 comment

#48 - `c2c.io.read_data.load_tensor` loads NoneType

Issue - State: closed - Opened by paupaiz 11 months ago - 2 comments

#47 - Updated Spatial Example

Pull Request - State: closed - Opened by earmingol 12 months ago

#46 - Merge pull request #45 from earmingol/master

Pull Request - State: closed - Opened by earmingol 12 months ago

#45 - docs

Pull Request - State: closed - Opened by earmingol 12 months ago

#44 - v0.7.3

Pull Request - State: closed - Opened by earmingol 12 months ago

#43 - v0.7.2

Pull Request - State: closed - Opened by earmingol 12 months ago

#42 - Quick rename of "moving windows" into "sliding windows"

Pull Request - State: closed - Opened by earmingol 12 months ago

#41 - fixed readthedocs

Pull Request - State: closed - Opened by earmingol 12 months ago

#40 - Merge pull request #39 from earmingol/new_version

Pull Request - State: closed - Opened by earmingol 12 months ago

#39 - Added mkdocs-jupyter

Pull Request - State: closed - Opened by earmingol 12 months ago

#38 - Merge pull request #37 from earmingol/new_version

Pull Request - State: closed - Opened by earmingol 12 months ago

#37 - cell2cell v0.7.0

Pull Request - State: closed - Opened by earmingol 12 months ago

#36 - Improve matplotlib-based code for compatibility with newer versions

Issue - State: closed - Opened by earmingol about 1 year ago
Labels: enhancement

#34 - c2c.tensor.InteractionTensor TypeError

Issue - State: closed - Opened by mabro7766 about 1 year ago - 2 comments

#33 - OutOfMemoryError when running run_tensor_cell2cell_pipeline on GPU

Issue - State: open - Opened by joseph-siefert about 1 year ago - 3 comments

#32 - Large number of significant interactions

Issue - State: open - Opened by joan-yanqiong over 1 year ago - 5 comments

#31 - cell2cell v0.6.8

Pull Request - State: closed - Opened by earmingol over 1 year ago

#30 - Linking the single cell tutorial with new vertsion of cell2cell

Issue - State: closed - Opened by Sophon-0 over 1 year ago - 1 comment

#29 - predicting on new data

Issue - State: closed - Opened by Sophon-0 over 1 year ago - 8 comments

#28 - IndexError at permutation step

Issue - State: closed - Opened by joan-yanqiong over 1 year ago - 7 comments

#27 - Gene expression normalization

Issue - State: closed - Opened by joan-yanqiong over 1 year ago - 2 comments

#26 - Update new_version to v0.6.6

Pull Request - State: closed - Opened by earmingol over 1 year ago

#25 - Elbow Rank 1?

Issue - State: closed - Opened by inofechm almost 2 years ago - 5 comments

#24 - Updates for v0.6.5

Pull Request - State: closed - Opened by earmingol almost 2 years ago

#23 - Minor update to examples & docs

Pull Request - State: closed - Opened by earmingol almost 2 years ago

#22 - extract LR pairs in each factor

Issue - State: closed - Opened by Wulin-Tan almost 2 years ago - 1 comment

#21 - Updates for v0.6.4

Pull Request - State: closed - Opened by earmingol almost 2 years ago

#20 - Quick rebase

Pull Request - State: closed - Opened by earmingol almost 2 years ago

#19 - Legends not appearing in plot

Issue - State: closed - Opened by dnjst almost 2 years ago - 1 comment

#18 - Updates for v0.6.3

Pull Request - State: closed - Opened by earmingol almost 2 years ago

#17 - Updates for v0.6.2

Pull Request - State: closed - Opened by earmingol about 2 years ago

#16 - Choices of upper_rank and tf_type

Issue - State: closed - Opened by deepcompbio about 2 years ago - 6 comments

#15 - Updates for v0.6.1

Pull Request - State: closed - Opened by earmingol about 2 years ago
Labels: enhancement

#14 - Importance of sorting contexts

Issue - State: closed - Opened by deepcompbio about 2 years ago - 2 comments

#13 - tensor.compute_tensor_factorization result is highly dependent on random_state

Issue - State: closed - Opened by deepcompbio about 2 years ago - 3 comments

#12 - Updates for v0.6.0

Pull Request - State: closed - Opened by earmingol over 2 years ago - 1 comment
Labels: enhancement

#11 - New version - v0.5.11

Pull Request - State: closed - Opened by earmingol over 2 years ago

#9 - ValueError: Invalid character / found in sheet title

Issue - State: closed - Opened by troks27 over 2 years ago

#8 - v0.5.10

Pull Request - State: closed - Opened by earmingol over 2 years ago

#7 - c2c.tensor.InteractionTensor error

Issue - State: closed - Opened by gdk43 about 3 years ago - 2 comments

#6 - tensor mask causes gpu tensor factorization to fail

Issue - State: closed - Opened by ckmah over 3 years ago - 1 comment

#5 - Code reorganization

Pull Request - State: closed - Opened by earmingol over 4 years ago

#4 - Added core pipeline

Pull Request - State: closed - Opened by earmingol about 5 years ago

#3 - Code restructuring

Pull Request - State: closed - Opened by earmingol about 5 years ago - 1 comment

#2 - things to add in the README

Issue - State: closed - Opened by cjos238 over 5 years ago

#1 - when installing on windows igraph doesn't install

Issue - State: closed - Opened by cjos238 over 5 years ago - 2 comments