Ecosyste.ms: Issues

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GitHub / eaasna/valik issues and pull requests

#37 - Search correctness

Pull Request - State: closed - Opened by eaasna about 3 years ago

#36 - Replace std::vector for a for-loop in local_prefilter and test it

Pull Request - State: closed - Opened by marehr about 3 years ago - 1 comment

#35 - Replace indexed_minimiser_hash with current seqan3 minimiser_hash implementation

Pull Request - State: closed - Opened by marehr about 3 years ago - 3 comments

#34 - Refactor search and build

Issue - State: closed - Opened by eaasna about 3 years ago
Labels: enhancement

#33 - Local Prefilter index format (idea)

Issue - State: closed - Opened by marehr about 3 years ago - 1 comment
Labels: enhancement

#32 - Pull `worker` out

Pull Request - State: closed - Opened by marehr about 3 years ago - 1 comment

#31 - Code cleanups

Pull Request - State: closed - Opened by marehr about 3 years ago - 1 comment

#30 - Signature changes

Pull Request - State: closed - Opened by marehr about 3 years ago - 2 comments

#29 - Unnecessary Whitespaces in source code

Issue - State: closed - Opened by marehr about 3 years ago
Labels: enhancement

#28 - Fix warnings

Pull Request - State: closed - Opened by marehr about 3 years ago - 1 comment

#27 - Splitting the reference into overlapping segments

Pull Request - State: closed - Opened by eaasna about 3 years ago - 6 comments

#26 - App template merge

Pull Request - State: closed - Opened by marehr about 3 years ago - 1 comment

#25 - Suggestions from review

Pull Request - State: closed - Opened by eaasna about 3 years ago - 1 comment

#24 - Find better name for the project.

Issue - State: closed - Opened by marehr about 3 years ago - 2 comments
Labels: enhancement

#23 - Split one reference sequence along multiple bins

Issue - State: closed - Opened by eaasna about 3 years ago
Labels: enhancement

#22 - Make CI work

Pull Request - State: closed - Opened by eaasna about 3 years ago - 1 comment

#21 - Refactor search: sliding window as library

Pull Request - State: closed - Opened by eaasna over 3 years ago - 1 comment

#20 - Convert some parts of the cli app into a library

Issue - State: closed - Opened by marehr over 3 years ago - 1 comment
Labels: enhancement

#19 - [FIX] lower/upper bound bug patch

Pull Request - State: closed - Opened by eaasna over 3 years ago

#18 - k-mer and window size default values.

Issue - State: closed - Opened by eaasna over 3 years ago
Labels: bug

#17 - Use minimiser span instead of k-mer start position

Issue - State: closed - Opened by eaasna over 3 years ago - 2 comments
Labels: bug

#16 - Refactoring search

Pull Request - State: closed - Opened by eaasna over 3 years ago

#15 - Improved cli tests

Issue - State: closed - Opened by eaasna over 3 years ago
Labels: enhancement

#14 - Use `seqan3::binning_bitvector` instead of `std::vector<uint8_t>` to save memory

Issue - State: closed - Opened by eaasna over 3 years ago - 5 comments
Labels: enhancement

#13 - Support for (w,k)-minimisers

Pull Request - State: closed - Opened by eaasna over 3 years ago

#12 - invalid read in `destroyed_indirectly_by_errors`

Issue - State: closed - Opened by eaasna over 3 years ago - 1 comment
Labels: bug

#11 - (w,k)-minimisers without reading table into memory

Issue - State: closed - Opened by eaasna over 3 years ago - 1 comment

#10 - (w,k)-minimiser support

Issue - State: closed - Opened by eaasna over 3 years ago
Labels: enhancement

#9 - Cli: sliding window options tests

Pull Request - State: closed - Opened by eaasna over 3 years ago

#8 - [MISC] renaming raptor -> sliding window

Pull Request - State: closed - Opened by eaasna over 3 years ago

#7 - coverage tests

Issue - State: closed - Opened by eaasna over 3 years ago

#6 - cmake tests

Issue - State: closed - Opened by eaasna over 3 years ago

#5 - cli tests

Issue - State: closed - Opened by eaasna over 3 years ago - 1 comment

#4 - benchmark tests

Issue - State: open - Opened by eaasna over 3 years ago

#3 - API tests

Issue - State: closed - Opened by eaasna over 3 years ago

#2 - Remove Raptor features that are outside the scope of my project

Issue - State: closed - Opened by eaasna over 3 years ago - 1 comment

#1 - Default values for arguments pattern length and overlap

Issue - State: closed - Opened by eaasna over 3 years ago