Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dynverse/dyngen issues and pull requests

#57 - Bugfix: simulation_type_knockdown with multiple genes

Pull Request - State: open - Opened by LouiseDck 4 months ago

#55 - Prepare for upcoming Seurat v5 release

Issue - State: open - Opened by Gesmira 9 months ago - 2 comments

#52 - Where is the GRN stored?

Issue - State: closed - Opened by rcannood over 1 year ago - 2 comments

#51 - Ground truth expression trends for mol_mrna in different cell lineages

Issue - State: open - Opened by spriyansh over 1 year ago - 1 comment

#50 - Interpretation of HK genes and Target genes

Issue - State: closed - Opened by spriyansh over 1 year ago - 1 comment

#49 - Can't open anndata object

Issue - State: closed - Opened by sarajimenez over 1 year ago - 3 comments

#48 - Require igraph version >=1.3.0

Pull Request - State: closed - Opened by george-hall-ucl over 1 year ago - 2 comments

#47 - generate_cells error in `vectbl_as_row_location()`

Issue - State: open - Opened by cameronraysmith almost 2 years ago

#46 - dyngen removed from CRAN

Issue - State: closed - Opened by scottgigante-immunai almost 2 years ago - 2 comments

#45 - Simultaneously knockout multiple genes

Issue - State: open - Opened by masastat almost 2 years ago

#44 - x or y has vectors with zero standard deviation; consider setting use_nan = TRUE

Issue - State: open - Opened by Pinolinoo almost 2 years ago - 5 comments

#43 - Issue Running generate_dataset()

Issue - State: open - Opened by Pinolinoo almost 2 years ago - 2 comments

#41 - rstudio crashes when running dyngen

Issue - State: open - Opened by Pinolinoo over 2 years ago

#39 - Questions about differential expressed genes

Issue - State: open - Opened by hiuchi over 2 years ago

#38 - Can not produce the same count matrix when seed is the same

Issue - State: closed - Opened by duohongrui over 2 years ago - 3 comments

#37 - kinetics_noise_none()

Issue - State: open - Opened by lila167 over 2 years ago - 2 comments

#36 - function 'Rcpp_precious_remove' not provided by package 'Rcpp

Issue - State: open - Opened by lila167 over 2 years ago - 2 comments

#35 - dyngen 1.0.3

Pull Request - State: closed - Opened by rcannood almost 3 years ago

#34 - Using `experiment_synchronised`

Issue - State: closed - Opened by ntanmayee almost 3 years ago - 3 comments

#33 - fix doi badge

Pull Request - State: closed - Opened by rcannood about 3 years ago

#32 - dyngen 1.0.2

Pull Request - State: closed - Opened by rcannood about 3 years ago - 1 comment

#31 - Estimate fate probabilities for sampled cells

Issue - State: closed - Opened by zsteve about 3 years ago - 3 comments

#30 - .

Issue - State: closed - Opened by DriessenA about 3 years ago

#29 - dyngen 1.0.1

Pull Request - State: closed - Opened by rcannood about 3 years ago - 1 comment

#28 - `dynwrap` should be an `Imports` dependency, not `Suggests`

Issue - State: closed - Opened by scottgigante over 3 years ago - 8 comments

#27 - dyngen 1.0.0

Pull Request - State: closed - Opened by rcannood over 3 years ago - 1 comment

#26 - simulation_type_knockdown adds more cells to KO

Issue - State: closed - Opened by HectorRDB over 3 years ago - 11 comments

#25 - simulation_type_knockdown no multiplier effect

Issue - State: closed - Opened by HectorRDB over 3 years ago - 2 comments

#24 - Merge dyngen 0.4.1

Pull Request - State: closed - Opened by rcannood over 3 years ago - 2 comments

#23 - failure to install

Issue - State: closed - Opened by jmaggiore almost 4 years ago - 2 comments

#22 - GRN without repressions

Issue - State: closed - Opened by koenvandenberge almost 4 years ago - 2 comments

#21 - dyngen 0.4.0

Pull Request - State: closed - Opened by rcannood almost 4 years ago - 1 comment

#20 - making datasets for trajectory alignment

Issue - State: closed - Opened by Rsugihara01 about 4 years ago - 3 comments

#19 - Rnav ratio new

Pull Request - State: closed - Opened by zouter about 4 years ago

#18 - dyngen 0.3.0

Pull Request - State: closed - Opened by rcannood about 4 years ago

#17 - documentation

Issue - State: closed - Opened by koenvandenberge over 4 years ago - 6 comments

#16 - generate_gold_standard returns an error

Issue - State: closed - Opened by Marius1311 over 4 years ago - 3 comments

#15 - Simulate differing kinetics

Pull Request - State: closed - Opened by LouiseDck over 4 years ago - 3 comments

#14 - Devel

Pull Request - State: closed - Opened by rcannood almost 5 years ago

#13 - Example does not work

Issue - State: closed - Opened by mvinyard almost 5 years ago - 2 comments

#12 - Devel

Pull Request - State: closed - Opened by rcannood almost 5 years ago

#10 - dyngen 0.2.0

Pull Request - State: closed - Opened by rcannood almost 5 years ago - 4 comments

#9 - Error during invoke in dyngen readme example

Issue - State: closed - Opened by dvorael1 about 5 years ago - 4 comments

#8 - Merging rework into devel

Pull Request - State: closed - Opened by rcannood about 5 years ago - 5 comments

#7 - Query regarding documentation

Issue - State: closed - Opened by atuldeshpande about 5 years ago - 14 comments

#6 - re-implement the random tree module network algorithm

Issue - State: closed - Opened by rcannood over 5 years ago - 1 comment

#5 - Devel

Pull Request - State: closed - Opened by rcannood over 5 years ago

#4 - Use dyndimred

Issue - State: closed - Opened by rcannood over 5 years ago - 1 comment

#3 - Several small fixes + remove qsub dependency

Pull Request - State: closed - Opened by zouter about 6 years ago

#2 - Update to new dynwrap

Pull Request - State: closed - Opened by zouter about 6 years ago

#1 - Devel

Pull Request - State: closed - Opened by zouter about 6 years ago