dynverse/anndata issues and pull requests

#30 - Cannot retrieve matrix and metadata after reading a h5ad data with read_h5ad

Issue - State: open - Opened by joonlee3 about 1 month ago

#29 - X and var not available

Issue - State: open - Opened by weshorton about 2 months ago

#28 - reticulate 1.36 breaks anndata R

Issue - State: closed - Opened by KaiWaldrant 6 months ago - 4 comments
Labels: bug

#27 - adata.raw = adata

Issue - State: open - Opened by Flu09 7 months ago

#26 - ModuleNotFoundError

Issue - State: open - Opened by lizchcase about 1 year ago - 1 comment

#25 - Error in h5ad loading: invalid class “dgRMatrix” object: 'Dim' slot does not have length 2

Issue - State: closed - Opened by pati-ni about 1 year ago - 6 comments

#24 - AttributeError: 'dict' object has no attribute 'dtype'

Issue - State: closed - Opened by pati-ni about 1 year ago - 1 comment

#23 - adata$uns error: Conversion from numpy array type 20 is not supported

Issue - State: open - Opened by simonmfr over 1 year ago - 1 comment

#22 - pandas module not found in read_h5ad

Issue - State: closed - Opened by UboCA over 1 year ago - 1 comment

#21 - Error with write_h5ad

Issue - State: open - Opened by OmarSalem12 almost 2 years ago - 1 comment

#20 - Feature/backed matrices

Pull Request - State: closed - Opened by rcannood over 2 years ago

#19 - Error in Sys.setenv(PATH = new_path) : wrong length for argument

Issue - State: open - Opened by binyaminZ over 2 years ago - 1 comment

#18 - "Unable to open file, file not found" despite the file is actually there in the right place

Issue - State: closed - Opened by akhst7 over 2 years ago - 3 comments

#17 - anndata as package dependency

Issue - State: closed - Opened by alex-d13 over 2 years ago - 3 comments

#16 - column subsetting deletes dimnames of the layer matrix

Issue - State: closed - Opened by akhst7 over 2 years ago - 1 comment

#15 - 'dimnames' applied to non-array

Issue - State: closed - Opened by akhst7 over 2 years ago - 9 comments

#14 - anndata dataframes and matrices

Issue - State: open - Opened by GreenGilad over 2 years ago - 1 comment

#13 - TypeError: AnnData.init() got an unexpected keyword argument 'obsp'

Issue - State: closed - Opened by gerrardmai almost 3 years ago - 2 comments

#12 - Error in py_ref_to_r(x) : Conversion from numpy array type 20 is not supported

Issue - State: closed - Opened by zh-zhang1984 about 3 years ago - 2 comments

#11 - row indices are not sorted within columns

Issue - State: closed - Opened by rcannood about 3 years ago - 1 comment

#10 - anndata 0.7.5.3

Pull Request - State: closed - Opened by rcannood about 3 years ago

#9 - Zarr support

Issue - State: open - Opened by schienstockd over 3 years ago - 1 comment

#8 - Error in anndata$write(filename = filename, compression = compression, : attempt to apply non-function

Issue - State: closed - Opened by akhst7 over 3 years ago - 13 comments

#7 - anndata 0.7.5.2

Pull Request - State: closed - Opened by rcannood over 3 years ago

#6 - Problem introduced by 0.7.5.1

Issue - State: open - Opened by orenbenkiki over 3 years ago - 4 comments
Labels: enhancement

#5 - Error in py_set_attr_impl(x, name, value)

Issue - State: closed - Opened by akhst7 over 3 years ago - 3 comments

#4 - Adding obj items to layers

Issue - State: closed - Opened by akhst7 over 3 years ago - 1 comment

#3 - Importing anndata

Issue - State: closed - Opened by akhst7 over 3 years ago - 2 comments

#2 - Install Error: object ‘py_del_attr’ is not exported by 'namespace:reticulate'

Issue - State: closed - Opened by LMayhew over 3 years ago - 3 comments

#1 - Error when accessing `X` after loading as HDF5-backed

Issue - State: open - Opened by milanmlft over 3 years ago - 7 comments

Ecosyste.ms: Issues

GitHub / dynverse/anndata issues and pull requests