Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / dwinter/pafr issues and pull requests
#44 - plot_synteny with multiple targets/queries
Issue -
State: open - Opened by SAMtoBAM over 1 year ago
#43 - bug: plot_coverage breaks if using target=FALSE andd fill="qname"
Issue -
State: open - Opened by MmasterT over 1 year ago
#42 - remove labels on coverage plot
Issue -
State: open - Opened by svedwards almost 2 years ago
#41 - clean up large dotplots
Issue -
State: open - Opened by svedwards almost 2 years ago
#40 - Can the switch the target to x-axis and query to y-axis?
Issue -
State: open - Opened by gematakbir almost 2 years ago
#39 - excessive memory usage.
Issue -
State: open - Opened by callumparr about 2 years ago
#38 - combine replicates
Issue -
State: open - Opened by mbartl13 about 2 years ago
#37 - NA introduced by coercion
Issue -
State: open - Opened by btredcup over 2 years ago
#36 - Can't read dotplot results
Issue -
State: open - Opened by Estherrr1997 over 2 years ago
- 1 comment
#35 - Overlay multiple pafs
Issue -
State: open - Opened by mbartl13 over 2 years ago
#34 - display of dot plot
Issue -
State: open - Opened by zhaotao1987 over 2 years ago
- 1 comment
#33 - changing axis labels
Issue -
State: open - Opened by melodysyue over 2 years ago
#32 - dotplot display
Issue -
State: open - Opened by mdsufz almost 3 years ago
#31 - plot_synteny error when target length is > query length
Issue -
State: open - Opened by mountainmanjared almost 3 years ago
#30 - Can pafr display the percentage of reference sequences aligned by query in Coverage plot?
Issue -
State: open - Opened by Xiao-Zhong about 3 years ago
- 1 comment
#29 - Expand scale_fill_brew palette in pafr
Issue -
State: open - Opened by aaronphillips7493 about 3 years ago
- 1 comment
#28 - Make synteny plot colours user settable
Issue -
State: open - Opened by dwinter about 3 years ago
#27 - How to find which coordinates are repeating in target chromosomes
Issue -
State: open - Opened by khush876 over 3 years ago
- 2 comments
#26 - .paf to circos?
Issue -
State: open - Opened by dwinter over 3 years ago
- 1 comment
Labels: enhancement
#25 - plot_synteny() breaks for query/target with same name
Issue -
State: open - Opened by philippbayer over 3 years ago
Labels: bug
#24 - dotplot order by tstart
Issue -
State: open - Opened by ruolin over 3 years ago
- 1 comment
Labels: enhancement
#23 - set size of sequence labels in dotplot()
Issue -
State: open - Opened by fraca over 3 years ago
- 3 comments
Labels: enhancement
#22 - Error in r[["strand"]] : subscript out of bounds
Issue -
State: open - Opened by DanielleMStevens almost 4 years ago
- 1 comment
#21 - Cannot create the alignment
Issue -
State: closed - Opened by agnibhat almost 4 years ago
- 2 comments
#20 - speed up tag processing
Issue -
State: closed - Opened by dwinter almost 4 years ago
Labels: enhancement
#19 - paf to syri
Issue -
State: open - Opened by dwinter almost 5 years ago
#18 - tidy up code style
Issue -
State: closed - Opened by dwinter almost 5 years ago
#17 - Expand README
Issue -
State: closed - Opened by dwinter almost 5 years ago
Labels: documentation, good first issue
#16 - Use helper `tests/testhat/helper_` file to avoid code duplication in tests
Issue -
State: closed - Opened by dwinter about 5 years ago
#15 - Allow shading of coverage plot to reflect mtaching query/target sequence (or other attribute)
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: enhancement
#14 - Dashes misplaced when using custom ordering for dotplot
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: bug
#13 - Nice labels and theme for synteny plot
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: enhancement
#12 - minor typos, one query about line 115
Pull Request -
State: closed - Opened by klee8 about 5 years ago
#11 - Export and document base-pair-scale labelers for all plots
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: enhancement
#10 - Useful default xlab, ylab on results of `plot_coverage`
Issue -
State: closed - Opened by dwinter about 5 years ago
#9 - Test documentation/examples
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: documentation, help wanted, good first issue
#8 - highlight regions of dotplot
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: enhancement
#7 - Alternative ordering for dotplot
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: enhancement
#6 - vignette
Issue -
State: closed - Opened by dwinter about 5 years ago
- 1 comment
Labels: documentation, good first issue, help-wanted
#5 - Unstated dplyr dependency
Issue -
State: closed - Opened by AmelieGersch about 5 years ago
#4 - Example data
Issue -
State: closed - Opened by dwinter about 5 years ago
#3 - class / print function for .paf table
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: enhancement
#2 - tests
Issue -
State: closed - Opened by dwinter about 5 years ago
Labels: meta
#1 - Documentation
Issue -
State: closed - Opened by dwinter about 5 years ago
- 1 comment
Labels: documentation, meta