Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dwinter/pafr issues and pull requests

#44 - plot_synteny with multiple targets/queries

Issue - State: open - Opened by SAMtoBAM over 1 year ago

#42 - remove labels on coverage plot

Issue - State: open - Opened by svedwards almost 2 years ago

#41 - clean up large dotplots

Issue - State: open - Opened by svedwards almost 2 years ago

#40 - Can the switch the target to x-axis and query to y-axis?

Issue - State: open - Opened by gematakbir almost 2 years ago

#39 - excessive memory usage.

Issue - State: open - Opened by callumparr about 2 years ago

#38 - combine replicates

Issue - State: open - Opened by mbartl13 about 2 years ago

#37 - NA introduced by coercion

Issue - State: open - Opened by btredcup over 2 years ago

#36 - Can't read dotplot results

Issue - State: open - Opened by Estherrr1997 over 2 years ago - 1 comment

#35 - Overlay multiple pafs

Issue - State: open - Opened by mbartl13 over 2 years ago

#34 - display of dot plot

Issue - State: open - Opened by zhaotao1987 over 2 years ago - 1 comment

#33 - changing axis labels

Issue - State: open - Opened by melodysyue over 2 years ago

#32 - dotplot display

Issue - State: open - Opened by mdsufz almost 3 years ago

#29 - Expand scale_fill_brew palette in pafr

Issue - State: open - Opened by aaronphillips7493 about 3 years ago - 1 comment

#28 - Make synteny plot colours user settable

Issue - State: open - Opened by dwinter about 3 years ago

#27 - How to find which coordinates are repeating in target chromosomes

Issue - State: open - Opened by khush876 over 3 years ago - 2 comments

#26 - .paf to circos?

Issue - State: open - Opened by dwinter over 3 years ago - 1 comment
Labels: enhancement

#25 - plot_synteny() breaks for query/target with same name

Issue - State: open - Opened by philippbayer over 3 years ago
Labels: bug

#24 - dotplot order by tstart

Issue - State: open - Opened by ruolin over 3 years ago - 1 comment
Labels: enhancement

#23 - set size of sequence labels in dotplot()

Issue - State: open - Opened by fraca over 3 years ago - 3 comments
Labels: enhancement

#22 - Error in r[["strand"]] : subscript out of bounds

Issue - State: open - Opened by DanielleMStevens almost 4 years ago - 1 comment

#21 - Cannot create the alignment

Issue - State: closed - Opened by agnibhat almost 4 years ago - 2 comments

#20 - speed up tag processing

Issue - State: closed - Opened by dwinter almost 4 years ago
Labels: enhancement

#19 - paf to syri

Issue - State: open - Opened by dwinter almost 5 years ago

#18 - tidy up code style

Issue - State: closed - Opened by dwinter almost 5 years ago

#17 - Expand README

Issue - State: closed - Opened by dwinter almost 5 years ago
Labels: documentation, good first issue

#15 - Allow shading of coverage plot to reflect mtaching query/target sequence (or other attribute)

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: enhancement

#14 - Dashes misplaced when using custom ordering for dotplot

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: bug

#13 - Nice labels and theme for synteny plot

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: enhancement

#12 - minor typos, one query about line 115

Pull Request - State: closed - Opened by klee8 about 5 years ago

#11 - Export and document base-pair-scale labelers for all plots

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: enhancement

#10 - Useful default xlab, ylab on results of `plot_coverage`

Issue - State: closed - Opened by dwinter about 5 years ago

#9 - Test documentation/examples

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: documentation, help wanted, good first issue

#8 - highlight regions of dotplot

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: enhancement

#7 - Alternative ordering for dotplot

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: enhancement

#6 - vignette

Issue - State: closed - Opened by dwinter about 5 years ago - 1 comment
Labels: documentation, good first issue, help-wanted

#5 - Unstated dplyr dependency

Issue - State: closed - Opened by AmelieGersch about 5 years ago

#4 - Example data

Issue - State: closed - Opened by dwinter about 5 years ago

#3 - class / print function for .paf table

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: enhancement

#2 - tests

Issue - State: closed - Opened by dwinter about 5 years ago
Labels: meta

#1 - Documentation

Issue - State: closed - Opened by dwinter about 5 years ago - 1 comment
Labels: documentation, meta