Ecosyste.ms: Issues

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GitHub / drostlab/myTAI issues and pull requests

#44 - Added `tfPS()` function and some further touch-up

Pull Request - State: closed - Opened by LotharukpongJS about 2 months ago - 1 comment

#42 - Preparing for cran

Pull Request - State: closed - Opened by lavakin 6 months ago

#41 - Added new logo

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago

#40 - LICENSE file missing

Issue - State: closed - Opened by bgruening about 1 year ago - 2 comments

#39 - Higher resolution logo

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago

#38 - OpenMP for parallelisation with the Apple M1 chip

Issue - State: open - Opened by LotharukpongJS about 1 year ago - 3 comments
Labels: bug

#37 - Huge variance issue fixed

Pull Request - State: closed - Opened by lavakin about 1 year ago - 1 comment

#36 - `CollapseReplicates()` always returns `Phylostratum` as the first column.

Issue - State: closed - Opened by LotharukpongJS about 1 year ago - 2 comments
Labels: bug

#35 - Variance issue fixed, ks fit chaged

Pull Request - State: closed - Opened by lavakin about 1 year ago - 1 comment

#33 - generators added

Pull Request - State: closed - Opened by lavakin about 1 year ago

#32 - fixes drostlab/myTAI#31

Pull Request - State: closed - Opened by lavakin about 1 year ago

#31 - FlatLineTest `Error in gamma_MME[[3]] : subscript out of bounds. `

Issue - State: closed - Opened by LotharukpongJS about 1 year ago - 1 comment
Labels: bug

#30 - Clarified equation for `pMatrix`, `pMatrixTEI` and `pStrataTEI`.

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago

#29 - Update README.md

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago - 1 comment

#28 - `PlotSignatureTransformed()`: Removed `vst` from the default transforms parameter

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago - 2 comments

#27 - Openmp and libomp check

Pull Request - State: closed - Opened by lavakin about 1 year ago - 9 comments

#26 - Eigen and permutations parallelization, Progressbar, instructions in readme

Pull Request - State: closed - Opened by lavakin about 1 year ago - 17 comments

#25 - Add figures to the homepage of the package site

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago - 1 comment

#24 - Updated website to reflect recent contributions

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago - 3 comments

#23 - Rewrote the rest of non-parallel cpp functions, that may benefit from LA library to Eigen

Pull Request - State: closed - Opened by lavakin about 1 year ago - 1 comment

#22 - Motivation - method bias

Issue - State: closed - Opened by kullrich about 1 year ago - 4 comments

#21 - FlatLineTest cpp functions now using Eigen library, >30% speed up

Pull Request - State: closed - Opened by lavakin about 1 year ago - 3 comments

#20 - Add badge Bioconda install

Pull Request - State: closed - Opened by gallardoalba about 1 year ago

#19 - Reopening PR #18

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago

#18 - `PlotSignatureTransformed()` function added

Pull Request - State: closed - Opened by LotharukpongJS about 1 year ago - 2 comments

#17 - improved fit, added ks-test

Pull Request - State: closed - Opened by lavakin about 1 year ago - 4 comments

#16 - p-value in `PlotSignature()`as subtitle

Issue - State: closed - Opened by LotharukpongJS about 1 year ago - 1 comment
Labels: enhancement

#15 - Changes to README and DESCRIPTION

Pull Request - State: closed - Opened by LotharukpongJS over 1 year ago - 1 comment

#14 - Citations in the DESCRIPTION file

Issue - State: closed - Opened by LotharukpongJS over 1 year ago - 1 comment

#13 - Conda package

Issue - State: closed - Opened by gallardoalba over 1 year ago - 16 comments
Labels: enhancement

#12 - Issues template added and update to `README.md`

Pull Request - State: closed - Opened by LotharukpongJS over 1 year ago - 1 comment

#11 - New functionalities for transformation and test functions

Pull Request - State: closed - Opened by LotharukpongJS over 1 year ago - 1 comment

#10 - What's the real mean of expression data/level

Issue - State: closed - Opened by Chenleinice over 2 years ago - 2 comments

#9 - Significance status of signature: NA

Issue - State: open - Opened by maxnest about 3 years ago - 3 comments

#8 - TAI for transcriptomes in different conditions

Issue - State: closed - Opened by weikai-320722 over 3 years ago - 2 comments

#7 - using an API key

Issue - State: closed - Opened by erinhunter4 almost 4 years ago - 2 comments

#6 - Suggestion

Issue - State: closed - Opened by dmontecino over 4 years ago - 3 comments
Labels: enhancement

#5 - Defining Divergence Stratum

Issue - State: closed - Opened by YXXEMXL over 5 years ago - 1 comment

#4 - Update PlotCIRatio.R

Pull Request - State: closed - Opened by ljljolinq1010 almost 7 years ago

#3 - Add files via upload

Pull Request - State: closed - Opened by ljljolinq1010 almost 7 years ago

#2 - Retriving parent taxonomy for specific Taxonomy ID

Issue - State: closed - Opened by abb44 about 8 years ago - 1 comment

#1 - Phylostratum of other organism

Issue - State: closed - Opened by vinaybaranwal almost 9 years ago - 4 comments