Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dreamtools/dreamtools issues and pull requests

#75 - Dev

Pull Request - State: open - Opened by thomasyu888 almost 8 years ago

#74 - add in read the docs

Issue - State: closed - Opened by cokelaer over 8 years ago - 1 comment

#73 - finalise readme and installation documentation

Issue - State: closed - Opened by cokelaer over 8 years ago

#72 - provide a full conda integration

Issue - State: closed - Opened by cokelaer over 8 years ago - 1 comment

#71 - color are not shown under windows

Issue - State: closed - Opened by cokelaer almost 9 years ago - 1 comment

#70 - a better/easier installation process required

Issue - State: closed - Opened by cokelaer almost 9 years ago - 1 comment

#69 - add a simple test in the constructor

Issue - State: closed - Opened by cokelaer almost 9 years ago

#68 - restrictive permissions end in error for the user.

Issue - State: closed - Opened by cokelaer almost 9 years ago

#67 - remove useless and intimidating warnings due to ssl

Issue - State: closed - Opened by cokelaer almost 9 years ago

#66 - Do not login to synapse when --onweb request

Issue - State: closed - Opened by cokelaer almost 9 years ago - 2 comments

#65 - Remove print statement in sageutils

Issue - State: closed - Opened by cokelaer almost 9 years ago - 1 comment

#64 - README.rst are missing in the pypi distribution

Issue - State: closed - Opened by cokelaer almost 9 years ago - 1 comment

#63 - Example in README not accessible (and more intimidating than useful)

Issue - State: closed - Opened by khinsen almost 9 years ago - 2 comments

#61 - Make dreamtools python 3 compatiable

Issue - State: closed - Opened by cokelaer almost 9 years ago - 2 comments
Labels: enhancement

#60 - No module 'cindex' (probably a missing dependency)

Issue - State: closed - Opened by khinsen almost 9 years ago - 1 comment

#59 - Installation requires Cython

Issue - State: closed - Opened by khinsen almost 9 years ago

#58 - add link to F1000 paper in the doc and update pypi doc

Issue - State: closed - Opened by cokelaer about 9 years ago - 1 comment

#57 - D8C1 download_goldstandard not implemented.

Issue - State: closed - Opened by cokelaer about 9 years ago - 2 comments
Labels: enhancement

#56 - Idea: a search function

Issue - State: closed - Opened by cokelaer about 9 years ago
Labels: wontfix

#55 - clean the core.rocs module

Issue - State: open - Opened by cokelaer about 9 years ago

#54 - finalise documentation before release v1

Issue - State: closed - Opened by cokelaer about 9 years ago - 1 comment

#52 - D9dot5C2 prostate cancer

Issue - State: open - Opened by cokelaer about 9 years ago

#51 - add docker image and update documentation accordingly

Issue - State: closed - Opened by cokelaer about 9 years ago - 1 comment

#50 - Login is not clear if there is no config file.

Issue - State: closed - Opened by cokelaer about 9 years ago

#49 - D9C4 TCGA

Issue - State: open - Opened by cokelaer about 9 years ago

#48 - Idea: provive Learboard synapse Id for convenience

Issue - State: open - Opened by cokelaer over 9 years ago - 1 comment

#47 - D9C3 alzeimer challenge to be added

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments

#46 - D8dot5C1

Issue - State: open - Opened by cokelaer over 9 years ago - 1 comment

#45 - D9C2 to implement (ALM)

Issue - State: open - Opened by cokelaer over 9 years ago - 1 comment

#44 - D4C3 scoring

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment

#43 - DREAM 9.5 -DREAM Olfaction Prediction Challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment

#42 - D8C1 move gold standard on synapse ?

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement

#41 - D9C1 Broad Dream gene essentiality

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#40 - D7C4 ncidream

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#39 - D7C3 prize4life

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#38 - D7C2 breast cancer

Issue - State: open - Opened by cokelaer over 9 years ago - 3 comments
Labels: enhancement, help wanted

#37 - D6C4 flowcap2

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#36 - D6C3 gene expression prediction challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#35 - D6C1- Alternative Splicing

Issue - State: open - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#34 - D5C4 network inference challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#33 - D5C3 system genetics challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#32 - D5C2 TF_DNA motif recognition challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement

#31 - D5C1 epitope antibody recognition

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#30 - D4C3 predictice signalling network modelling

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#29 - D4C4 in silico network challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment

#28 - D4C1 peptide recogntion

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#27 - D3C4 in silico network challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#26 - D3C3 Gene experssion prediction

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#25 - D3C2 Signaling Response Prediction

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#24 - D3C1 signalling cascade identification

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#23 - D2C5 geneome scale network inference

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#22 - D2C4 in silico network challenge

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#21 - D2C3 Synthetic Five-Gene Network Inference

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#20 - D2C2 protein-protein interaction network inference

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment
Labels: enhancement, help wanted

#19 - D2C1 BCL6 Transcriptional Target Prediction

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments
Labels: enhancement, help wanted

#18 - things to be done to finalise D8C1

Issue - State: closed - Opened by cokelaer over 9 years ago - 4 comments

#17 - need easy function to get the simulation in dataframe format

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment

#16 - checking the aggregate for SC1A

Issue - State: closed - Opened by cokelaer over 9 years ago - 2 comments

#15 - null distribution to be recomputed for D8C1 SC2B

Issue - State: closed - Opened by cokelaer over 9 years ago - 1 comment

#14 - added cythonize setup instruction

Pull Request - State: closed - Opened by cbare over 9 years ago

#13 - Implemented standalone code for aggregation in insilico challenges

Issue - State: closed - Opened by cokelaer over 9 years ago
Labels: enhancement

#12 - add D7/D6 parameters estimation

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment

#11 - add D8C3

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment
Labels: enhancement

#10 - aggregation requires synapse

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment
Labels: enhancement

#9 - finalise D8C2

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment

#8 - experimental data set for SC2A null distribution to be provided

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment
Labels: bug

#7 - scoring function with ranking

Issue - State: closed - Opened by cokelaer almost 10 years ago
Labels: enhancement

#6 - config file to store data files locally

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment

#5 - function to download all GS

Issue - State: closed - Opened by cokelaer almost 10 years ago - 1 comment

#4 - scoring function SC2B

Issue - State: closed - Opened by cokelaer almost 10 years ago

#3 - scoring function SC2A

Issue - State: closed - Opened by cokelaer almost 10 years ago

#2 - scoring function SC1B

Issue - State: closed - Opened by cokelaer almost 10 years ago

#1 - scoring function SC1A

Issue - State: closed - Opened by cokelaer almost 10 years ago