Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / draeger-lab/SBSCL issues and pull requests

#74 - Errors are detected when running some SBMLTestSuite case.

Issue - State: open - Opened by TlexCypher 12 months ago - 8 comments
Labels: bug

#73 - download_bigg_models.sh throws ERROR 404

Issue - State: open - Opened by funasoul about 1 year ago - 2 comments

#72 - Match the version of JSBML that we have in maven central.

Pull Request - State: closed - Opened by funasoul about 1 year ago - 1 comment

#71 - Exchangable solvers

Issue - State: open - Opened by draeger over 1 year ago
Labels: enhancement

#70 - Support pure Java solver for constraint-based modeling

Issue - State: open - Opened by draeger over 1 year ago
Labels: enhancement

#69 - Update the project's website

Issue - State: open - Opened by draeger over 2 years ago
Labels: help wanted, documentation

#68 - Improve the curation level on BioSimulators

Issue - State: open - Opened by draeger over 2 years ago - 1 comment
Labels: enhancement

#67 - BioModels support

Pull Request - State: closed - Opened by hemilpanchiwala over 3 years ago - 3 comments
Labels: enhancement, sbml, stochastic-simulation, biomodels

#66 - Update path for stochastic tests

Pull Request - State: closed - Opened by hemilpanchiwala over 3 years ago

#65 - Minor update in pom.xml

Pull Request - State: closed - Opened by hemilpanchiwala over 3 years ago

#64 - Updates in the BiGG models test

Pull Request - State: closed - Opened by hemilpanchiwala over 3 years ago
Labels: enhancement

#63 - Upload SBSCL to mvnrepository

Issue - State: closed - Opened by matthiaskoenig over 3 years ago - 3 comments
Labels: enhancement, maven

#62 - Update Maven dependency documentation (version 2.0)

Issue - State: closed - Opened by matthiaskoenig over 3 years ago - 1 comment
Labels: documentation, dependencies

#61 - Refactors

Pull Request - State: closed - Opened by curiousleo over 3 years ago - 2 comments
Labels: code-format

#60 - Fewer BigDecimal conversions

Pull Request - State: closed - Opened by curiousleo over 3 years ago - 2 comments

#59 - Fix ErrorProne issues and Bash download script

Pull Request - State: closed - Opened by curiousleo over 3 years ago - 1 comment
Labels: enhancement, ErrorProne

#58 - Bump junit from 4.11 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#57 - Documentation Pull Request

Pull Request - State: closed - Opened by hemilpanchiwala about 4 years ago - 3 comments
Labels: enhancement, gsoc, documentation

#56 - Formatting Pull Request

Pull Request - State: closed - Opened by hemilpanchiwala about 4 years ago - 2 comments
Labels: enhancement, gsoc

#55 - Refactor FERN classes to use SBSCL classes

Issue - State: open - Opened by hemilpanchiwala about 4 years ago - 1 comment
Labels: enhancement, stochastic-simulation

#54 - Support for stochastic simulation added

Pull Request - State: closed - Opened by hemilpanchiwala about 4 years ago - 9 comments
Labels: enhancement, gsoc

#53 - Add stochastic simulation through FERN to SBSCL

Pull Request - State: closed - Opened by hemilpanchiwala about 4 years ago
Labels: enhancement

#52 - Terminology, Power and Oppressive Language in Computer Science

Issue - State: closed - Opened by draeger about 4 years ago - 2 comments
Labels: enhancement

#51 - FBA tests fail on parallel testing

Issue - State: closed - Opened by hemilpanchiwala over 4 years ago - 2 comments
Labels: gsoc, sbml-fbc

#50 - Simulation of SBML models with changing compartment size

Issue - State: closed - Opened by hemilpanchiwala over 4 years ago - 4 comments
Labels: gsoc, SBML-l3v2

#49 - Support for FBA FROG analysis

Issue - State: open - Opened by matthiaskoenig over 4 years ago
Labels: enhancement

#48 - GSoC - SBML L3V2 models support with some other bug fixes

Pull Request - State: closed - Opened by hemilpanchiwala over 4 years ago - 8 comments
Labels: gsoc

#47 - SBML L3V2 tests failing with no identified reason yet

Issue - State: closed - Opened by hemilpanchiwala over 4 years ago - 1 comment
Labels: gsoc, SBML-l3v2

#46 - Add delay property to the rateOf function

Issue - State: open - Opened by hemilpanchiwala over 4 years ago - 1 comment
Labels: gsoc, SBML-l3v2

#45 - Misinterpretation of function variables with parameters

Issue - State: open - Opened by hemilpanchiwala over 4 years ago
Labels: bug, gsoc, sbml

#44 - Event triggers before the mentioned condition

Issue - State: open - Opened by hemilpanchiwala over 4 years ago - 4 comments
Labels: bug, gsoc, sbml

#43 - Add support for rateOf csymbol

Issue - State: closed - Opened by hemilpanchiwala over 4 years ago - 12 comments
Labels: enhancement, gsoc, sbml, SBML-l3v2

#42 - Add functions in ASTNodeInterpreter class for calculating node values of SBML L3V2 models

Issue - State: closed - Opened by hemilpanchiwala over 4 years ago - 1 comment
Labels: enhancement, gsoc

#41 - Simulation of models with reaction without reactants and products

Issue - State: closed - Opened by hemilpanchiwala over 4 years ago
Labels: gsoc, warning

#40 - Resolves issues of SBMLTestSuite and FBA

Pull Request - State: closed - Opened by hemilpanchiwala over 4 years ago - 4 comments
Labels: gsoc

#39 - SBML TestSuite semantic/01592 takes 15-25 minutes to run

Issue - State: open - Opened by matthiaskoenig over 4 years ago - 10 comments
Labels: enhancement, help wanted, stochastic-simulation

#37 - Travis fix & JSBML update

Pull Request - State: closed - Opened by hemilpanchiwala over 4 years ago
Labels: gsoc

#36 - Some comp tests are failing due to JSBML flattening

Issue - State: open - Opened by matthiaskoenig over 4 years ago - 4 comments
Labels: bug, pre-gsoc

#35 - Update the SBMLTestSuite Runner for L3V2

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 4 comments
Labels: enhancement, gsoc

#34 - Travis tests are currently failing

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 8 comments
Labels: bug, gsoc

#33 - Build icon in README links to incorrect page

Issue - State: closed - Opened by matthiaskoenig over 4 years ago - 2 comments
Labels: bug, gsoc

#32 - Update to JSBML 1.5

Issue - State: closed - Opened by draeger over 4 years ago

#31 - fixed issue in OMEXArchive

Pull Request - State: closed - Opened by hemilpanchiwala over 4 years ago

#30 - update COBRAsolver to add weighted constraints

Pull Request - State: closed - Opened by hemilpanchiwala over 4 years ago - 1 comment

#29 - SBML Version Support Documentation

Issue - State: closed - Opened by nanowizard almost 5 years ago - 4 comments
Labels: help wanted, sbml

#28 - Included all authors in readme

Pull Request - State: closed - Opened by MariaHei over 5 years ago

#27 - Example OMEX file contains wrong model file name

Issue - State: closed - Opened by draeger over 5 years ago
Labels: bug

#26 - Deleting the dist folder

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 2 comments
Labels: enhancement

#25 - Comp example file missing

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: bug, question

#24 - Update uni-rostock maven dependencies

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 4 comments

#23 - Postprocessing function for SED-ML files not working any more

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 2 comments
Labels: enhancement, sedml_1v2

#22 - SED-ML FileResolver is broken

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 2 comments

#21 - Implement comp support

Issue - State: closed - Opened by shalinshah1993 about 6 years ago
Labels: enhancement

#20 - Run SBSCL against the SBML test suite in CI

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 1 comment

#19 - Example SEDML L1V2 files have errors

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: bug, enhancement, help wanted, question

#18 - SBSCL expect one of the Output elements to be a time symbol

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 6 comments
Labels: bug, enhancement

#17 - Number of points in SED-ML simulations incorrect

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 1 comment
Labels: invalid

#16 - Move the assembly file to the source folder

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: maven

#15 - No output generated for osci-nested-pulse sedml example

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 1 comment
Labels: bug

#14 - Remove repeated-steady-scan-oscli test

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 10 comments
Labels: enhancement, sedml_1v2

#13 - Remove repeated-stochastic-runs test

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 1 comment
Labels: invalid

#12 - Cannot reach steadyState for repeated-steady-scan-oscli test

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 7 comments
Labels: question

#11 - Remove org.simulator.examples folder

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 2 comments
Labels: duplicate, question

#10 - Remove 3rd party libs from src/lib folder

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: enhancement, question, gsoc, maven

#9 - Update index.html and wiki

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: question

#8 - Incorrect output curve for repressilator output #3

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 4 comments
Labels: help wanted, question, sedml_1v2

#7 - Incorrect graphical output for some sedml tests

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 11 comments
Labels: bug, gsoc

#6 - Remove old javadocs

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: question

#5 - LPsolver not working on ubuntu linux (libglpkjni_x64.so: undefined symbol: lib_set_fault_hook)

Issue - State: open - Opened by shalinshah1993 about 6 years ago - 16 comments
Labels: wontfix, planatscher, scpsolver

#4 - Run FBA tests on all BiGG models

Issue - State: closed - Opened by shalinshah1993 about 6 years ago - 3 comments
Labels: wontfix, planatscher, scpsolver

#3 - Add support for nested repeated tasks

Issue - State: open - Opened by shalinshah1993 about 6 years ago
Labels: enhancement, help wanted

#2 - Merge GSoC repo with draeger's SBSCL repo

Pull Request - State: closed - Opened by shalinshah1993 about 6 years ago - 2 comments
Labels: gsoc

#1 - FBA gives incorrect objective_value 0 for bigg models iMM1415 & iRC1080

Issue - State: closed - Opened by matthiaskoenig over 6 years ago - 7 comments