Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / donovan-h-parks/refinem issues and pull requests

#57 - ssu_erroneous issue

Issue - State: open - Opened by Bowenji147 over 3 years ago - 1 comment

#56 - r95 database files for refinem donot contain 16S files?

Issue - State: open - Opened by Jigyasa3 over 3 years ago - 3 comments

#55 - RefineM database update

Issue - State: open - Opened by uzunmasha over 3 years ago - 1 comment

#54 - KeyError in taxon_profile

Issue - State: open - Opened by estebangongora almost 4 years ago - 2 comments

#53 - TypeError: can only join an iterable

Issue - State: open - Opened by angelovaag almost 4 years ago

#52 - Inconsistent Nomenclatures of the organisms in r95 and r80 databases

Issue - State: open - Opened by DOieGYuan about 4 years ago - 1 comment

#51 - format of coverage_file

Issue - State: closed - Opened by slaperriere about 4 years ago

#50 - Pre-built diamond database is incompatible with newer versions of diamond

Issue - State: closed - Opened by papanikos about 4 years ago - 2 comments

#48 - refinem taxon_profile went wrong

Issue - State: closed - Opened by xu-j1234566 over 4 years ago - 1 comment

#47 - ssu_erroneous issue

Issue - State: closed - Opened by arghya1611 over 4 years ago - 7 comments

#46 - RefineM database download url is broken

Issue - State: closed - Opened by taylorreiter over 4 years ago - 1 comment

#45 - Py3 port

Pull Request - State: closed - Opened by donovan-h-parks almost 5 years ago

#44 - check if bin id match before remove scaffolds from a bin

Pull Request - State: open - Opened by lijierr almost 5 years ago

#43 - Error with refine taxon_profile

Issue - State: closed - Opened by arghya1611 about 5 years ago - 2 comments

#42 - GTDB r89 protein database

Issue - State: closed - Opened by uzunmasha about 5 years ago - 5 comments

#41 - Can we use refined and unrefined bins from a sample together?

Issue - State: open - Opened by Jigyasa3 about 5 years ago - 2 comments

#40 - warning in taxon_profile

Issue - State: open - Opened by Xiaolan89 over 5 years ago

#39 - Wrong scaffold coverage calculation when using coverage file

Issue - State: open - Opened by adityabandla over 5 years ago - 5 comments

#38 - installation issue

Issue - State: open - Opened by Xiaolan89 over 5 years ago - 2 comments

#37 - use coverage profile instead of bam files

Issue - State: closed - Opened by liupfskygre over 5 years ago - 5 comments

#36 - error in filtering?

Issue - State: open - Opened by raw937 over 5 years ago

#35 - Installation issues

Issue - State: open - Opened by nixon444 over 5 years ago - 18 comments

#34 - setup.py: Add pysam as a dependency.

Pull Request - State: open - Opened by wwood almost 6 years ago

#33 - error during refinem taxon_profile

Issue - State: open - Opened by chloelulu almost 6 years ago

#32 - taxon_filter

Issue - State: open - Opened by uzunmasha about 6 years ago

#31 - RefineM split command

Issue - State: closed - Opened by CynthiaChibani about 6 years ago

#30 - Databases

Issue - State: closed - Opened by HadrienG about 6 years ago - 9 comments

#29 - Memory problems

Issue - State: open - Opened by joao1980 over 6 years ago

#28 - refinem ssu_erroneous error

Issue - State: open - Opened by zhaohuicheng over 6 years ago - 2 comments

#27 - How to use RefineM to Improve completeness

Issue - State: open - Opened by nohayoussef over 6 years ago - 1 comment

#26 - outliers run error

Issue - State: open - Opened by gaohanlisa over 6 years ago - 5 comments

#25 - diamond fails on new version

Issue - State: open - Opened by ghost over 6 years ago

#24 - can refineM be used public?

Issue - State: closed - Opened by chloelulu over 6 years ago - 1 comment

#23 - problem with taxon profile

Issue - State: closed - Opened by rotoscan over 6 years ago - 1 comment

#22 - Error: BAM index file is missing, while it is actually present

Issue - State: closed - Opened by Stefano04 almost 7 years ago - 2 comments

#21 - refinem outliers error during plot

Issue - State: open - Opened by michoug almost 7 years ago - 1 comment

#20 - refinem ssu_erroneous error

Issue - State: closed - Opened by michoug almost 7 years ago - 12 comments

#19 - --cov_corr value

Issue - State: open - Opened by palomo11 almost 7 years ago - 1 comment

#18 - Error ktImportText missing

Issue - State: closed - Opened by palomo11 almost 7 years ago - 4 comments

#17 - Zero coverage for all samples

Issue - State: open - Opened by cedwardson4 almost 7 years ago - 14 comments

#16 - FloatingPointError: underflow encountered in double_scalars

Issue - State: closed - Opened by SagesWang almost 7 years ago - 4 comments

#15 - Questions about Removing contamination based on taxonomic assignments

Issue - State: closed - Opened by Feverdreams about 7 years ago - 3 comments

#14 - DIAMOND version

Issue - State: closed - Opened by evensannesriiser about 7 years ago - 4 comments

#13 - Outliers: Ignore "cov_perc" parameter

Issue - State: closed - Opened by evensannesriiser about 7 years ago - 3 comments

#12 - problem with taxon_profile databases

Issue - State: closed - Opened by zyyalice about 7 years ago - 6 comments

#11 - refinem outliers error

Issue - State: closed - Opened by dot4822 about 7 years ago - 14 comments

#10 - Problem with taxon_profile

Issue - State: closed - Opened by kramersu about 7 years ago - 3 comments

#9 - Add in option to show PE read links between contigs

Issue - State: open - Opened by donovan-h-parks about 8 years ago

#8 - Incorrect percentages in tables

Issue - State: open - Opened by donovan-h-parks about 8 years ago

#7 - Fix missing comma which caused mpld3 dependency to be skipped and cleanup README.rst

Pull Request - State: closed - Opened by kata198 over 8 years ago - 1 comment

#6 - Fixup installation and presentaion

Pull Request - State: closed - Opened by kata198 over 8 years ago - 2 comments

#5 - install_requires is not part of distutils, it is part of setuptools. …

Pull Request - State: closed - Opened by kata198 over 8 years ago - 5 comments

#4 - Detection of Euk contamination

Issue - State: open - Opened by donovan-h-parks over 8 years ago

#3 - Robust statistics

Issue - State: closed - Opened by donovan-h-parks over 8 years ago - 1 comment

#2 - Died during refinem gene_profile

Issue - State: closed - Opened by fauziharoon almost 9 years ago - 4 comments

#1 - refinem scaffold_stats required pysam v0.7.7

Issue - State: closed - Opened by donovan-h-parks over 9 years ago - 1 comment