Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dondi/GRNsight issues and pull requests

#1070 - Export features should factor Network Mode more deeply

Issue - State: closed - Opened by dondi about 1 year ago - 1 comment
Labels: priority 0, network

#1069 - Network Mode needs to adjust more aspects of a current network

Issue - State: open - Opened by dondi about 1 year ago - 1 comment
Labels: priority 0.5, network

#1068 - Node coloring does not support protein-level expression data

Issue - State: closed - Opened by dondi about 1 year ago - 4 comments
Labels: priority 0.5, review requested, node coloring, network

#1067 - Activate Network mode at all times

Issue - State: open - Opened by dondi about 1 year ago - 3 comments
Labels: priority 0.5, network

#1066 - Adjust Open File for varying network modes (GRN/PPI)

Issue - State: closed - Opened by dondi about 1 year ago - 2 comments
Labels: priority 0.5, review requested, network

#1065 - Add PPI demo

Issue - State: closed - Opened by dondi about 1 year ago - 5 comments
Labels: priority 0, review requested, network

#1064 - Fixing search symbol #1050

Pull Request - State: closed - Opened by ntran18 about 1 year ago

#1063 - Making the search button bigger #1050

Pull Request - State: closed - Opened by ntran18 over 1 year ago

#1062 - Update local setups to include grnsettings

Issue - State: closed - Opened by dondi over 1 year ago - 4 comments
Labels: functionality, priority 0, database

#1061 - Deeper integration of distinct network types

Issue - State: closed - Opened by dondi over 1 year ago - 4 comments
Labels: functionality, priority 0

#1060 - New tests are needed for protein-to-protein-specific networks

Issue - State: open - Opened by dondi over 1 year ago
Labels: testing

#1059 - Export to SVG modifies the graph itself

Issue - State: closed - Opened by dondi over 1 year ago - 6 comments
Labels: bug, priority 0, review requested

#1058 - Modify cell A1 name #1054

Pull Request - State: closed - Opened by ntran18 over 1 year ago - 1 comment

#1057 - Modify the name of cell A1 of exporting Excel workbook #1054

Pull Request - State: closed - Opened by ntran18 over 1 year ago - 1 comment

#1056 - Fixing other modals in #1029 issue

Pull Request - State: closed - Opened by ntran18 over 1 year ago

#1055 - Node Coloring Coordination between top menu and side panel

Issue - State: closed - Opened by ntran18 over 1 year ago - 4 comments
Labels: feature request, priority 1, review requested, node coloring

#1054 - Modify the name of cell A1 of exporting Excel workbook

Issue - State: closed - Opened by ntran18 over 1 year ago - 11 comments
Labels: feature request, priority 0, network

#1053 - Missing expression data for a gene in database causes UI problems

Issue - State: closed - Opened by ntran18 over 1 year ago - 2 comments
Labels: bug, priority 0.5, review requested, database

#1052 - Fixing bug #1029

Pull Request - State: closed - Opened by ntran18 over 1 year ago - 1 comment

#1051 - Maika 1033

Pull Request - State: closed - Opened by ntran18 over 1 year ago - 3 comments

#1050 - Search (magnifying glass) button is too small in Load from Database modal

Issue - State: closed - Opened by kdahlquist over 1 year ago - 3 comments
Labels: bug, priority 0, review requested

#1049 - Fix bug #1034

Pull Request - State: closed - Opened by ntran18 over 1 year ago

#1048 - Fixing bug #1033

Pull Request - State: closed - Opened by ntran18 over 1 year ago - 1 comment

#1047 - Join LMUCS Slack

Issue - State: closed - Opened by dondi over 1 year ago - 2 comments
Labels: priority 0, review requested

#1046 - Get GRNsight running locally on your machine

Issue - State: closed - Opened by dondi over 1 year ago - 18 comments
Labels: priority 0, logistics

#1045 - Fix bug #1016

Pull Request - State: closed - Opened by ntran18 over 1 year ago - 1 comment

#1044 - Look into Coveralls integration

Issue - State: closed - Opened by dondi over 1 year ago - 3 comments
Labels: bug

#1043 - Follow the new student onboarding checklist

Issue - State: closed - Opened by dondi over 1 year ago - 1 comment
Labels: priority 0, review requested

#1042 - Scheduling GRNsight meeting for Fall 2023

Issue - State: closed - Opened by kdahlquist over 1 year ago - 3 comments
Labels: priority 0, logistics

#1041 - Check out this solution to keeping library versions straight in R

Issue - State: open - Opened by kdahlquist over 1 year ago
Labels: enhancement

#1040 - Fixed glyphicon rendering

Pull Request - State: closed - Opened by Onariaginosa almost 2 years ago

#1039 - v7.0.0 Protein-Protein Physical Interactions

Pull Request - State: closed - Opened by Onariaginosa almost 2 years ago

#1038 - #1016

Pull Request - State: closed - Opened by ntran18 almost 2 years ago

#1037 - #992 Adding a grnsettings table to database

Pull Request - State: closed - Opened by ahmad00m almost 2 years ago - 2 comments

#1036 - #1016

Pull Request - State: closed - Opened by ntran18 almost 2 years ago

#1035 - Change order of Yeastmine versions in generate GRN modal

Issue - State: closed - Opened by kdahlquist almost 2 years ago - 2 comments
Labels: priority 0, enhancement

#1034 - Restrict Graph to Viewport Bug

Issue - State: closed - Opened by Sarronnn almost 2 years ago - 7 comments
Labels: bug, functionality, priority 0, review requested

#1033 - Can only change dataset from bottom option, not top

Issue - State: closed - Opened by Sarronnn almost 2 years ago - 4 comments
Labels: bug, functionality, priority 0, review requested

#1032 - v6.0.7

Pull Request - State: closed - Opened by Onariaginosa almost 2 years ago

#1031 - Release v6.0.7 to production

Issue - State: closed - Opened by dondi almost 2 years ago - 7 comments
Labels: priority 0, for next release

#1030 - Change names for environment variables pertaining to the database

Issue - State: closed - Opened by Onariaginosa almost 2 years ago - 6 comments
Labels: priority 0, for next release, refactor, database

#1029 - Modal closes unexpectedly when click and drag the modal window with the mouse

Issue - State: closed - Opened by kdahlquist almost 2 years ago - 10 comments
Labels: bug, priority 0, review requested

#1028 - protein-protein interaction UI refinements

Issue - State: closed - Opened by kdahlquist almost 2 years ago - 8 comments
Labels: feature request, priority 0

#1027 - GRNsight Website certificate is expired

Issue - State: closed - Opened by Onariaginosa almost 2 years ago - 1 comment

#1026 - Pg version change

Pull Request - State: closed - Opened by ahmad00m almost 2 years ago - 2 comments

#1025 - #1022 #1023 #1024 completed. #1020 WIP

Pull Request - State: closed - Opened by Onariaginosa almost 2 years ago
Labels: for next release

#1024 - Bug: None of the edges are displaying

Issue - State: closed - Opened by Onariaginosa almost 2 years ago - 1 comment
Labels: bug, priority 0, review requested, for next release

#1023 - Edit the information in the menu bar to say GRN source

Issue - State: closed - Opened by kdahlquist almost 2 years ago - 2 comments
Labels: functionality, priority 0, for next release

#1022 - Data refresh for network database

Issue - State: closed - Opened by kdahlquist almost 2 years ago - 3 comments
Labels: priority 0, review requested, for next release, database

#1021 - LMU URS 2023

Issue - State: closed - Opened by kdahlquist almost 2 years ago - 30 comments

#1020 - Investigate Yeastmine for information on Protein - Protein Interactions Mode

Issue - State: closed - Opened by Onariaginosa almost 2 years ago - 10 comments
Labels: database

#1019 - #1018 consolidated export to excel

Pull Request - State: closed - Opened by Onariaginosa almost 2 years ago
Labels: for next release

#1018 - Export to Excel isn't actually exporting an unweighted graph when selected

Issue - State: closed - Opened by Onariaginosa about 2 years ago - 3 comments
Labels: bug, review requested, for next release

#1017 - update Client Side Testing Document wiki to be compatible with multiple featureList.json files

Issue - State: closed - Opened by kdahlquist about 2 years ago - 1 comment
Labels: documentation, priority 0

#1016 - Bug: set layout to grid layout and click on any demo, layout goes back to force graph

Issue - State: closed - Opened by kdahlquist about 2 years ago - 18 comments
Labels: bug, functionality, priority 0, review requested

#1015 - decide how to partition loader scripts for database between GRNsight and GRNsight Archive repositories

Issue - State: closed - Opened by kdahlquist about 2 years ago - 1 comment
Labels: logistics

#1014 - Initial Setup

Issue - State: closed - Opened by ntran18 about 2 years ago - 13 comments
Labels: priority 0

#1013 - GRNsight Lambda port sometimes misses CSS generation

Issue - State: open - Opened by Onariaginosa about 2 years ago - 14 comments
Labels: priority 1, functionality

#1012 - Bug review of v6.0.4

Issue - State: closed - Opened by dondi about 2 years ago - 8 comments
Labels: functionality, priority 0

#1011 - Database setup in Initial Setup wiki

Issue - State: closed - Opened by dondi about 2 years ago - 11 comments
Labels: documentation, priority 0

#1010 - Travis has imposed usage limit need solution

Issue - State: closed - Opened by kdahlquist about 2 years ago - 4 comments
Labels: priority 0

#1009 - Plan meeting time for Spring 2023

Issue - State: closed - Opened by ahmad00m about 2 years ago - 11 comments

#1008 - v6.0.4

Pull Request - State: closed - Opened by ahmad00m about 2 years ago

#1007 - Moved ajax and getJson function into api module

Pull Request - State: closed - Opened by Sarronnn about 2 years ago

#1006 - Sarrefactor

Pull Request - State: closed - Opened by Sarronnn about 2 years ago

#1005 - Release v6.0.4 to production

Issue - State: closed - Opened by dondi about 2 years ago - 13 comments
Labels: review requested

#1003 - Remove residual hard-coded database information

Issue - State: closed - Opened by Onariaginosa about 2 years ago - 2 comments
Labels: priority 0, review requested, for next release

#1002 - Lingering style notes from #996

Issue - State: closed - Opened by dondi about 2 years ago - 7 comments
Labels: functionality, priority 0, enhancement

#1001 - Moved functions into grnsight-api.js

Pull Request - State: closed - Opened by Sarronnn about 2 years ago - 2 comments

#1000 - Review max-line-length issues and offer fixes

Issue - State: closed - Opened by dondi about 2 years ago - 1 comment

#999 - Asynchronous coordination before Thanksgiving 2022

Issue - State: closed - Opened by dondi about 2 years ago - 3 comments

#998 - Configure linter to accept inline `return`-less functions

Issue - State: closed - Opened by dondi about 2 years ago - 1 comment
Labels: backlog

#997 - Flexibility updates to gene search

Issue - State: closed - Opened by dondi over 2 years ago - 2 comments
Labels: wontfix, priority 0

#995 - Investigate beta 6.0.2 deployment database regression

Issue - State: closed - Opened by dondi over 2 years ago - 6 comments
Labels: priority 0, review requested

#994 - Support genes in multiple species in the database

Issue - State: closed - Opened by dondi over 2 years ago - 1 comment
Labels: backlog

#993 - Transition remaining “bare” network calls to API module

Issue - State: closed - Opened by dondi over 2 years ago - 15 comments
Labels: priority 0, for next release

#992 - Establish a “grnsettings” table that potentially stores default values—start with default expression data set

Issue - State: closed - Opened by dondi over 2 years ago - 18 comments
Labels: priority 0.5, review requested, database

#991 - Divergent pg or other versions noted for database functionality

Issue - State: closed - Opened by dondi over 2 years ago - 2 comments

#990 - Bug: When loading a network from database. If no relations are observed GRNsight crashes

Issue - State: closed - Opened by Onariaginosa over 2 years ago - 2 comments
Labels: bug, review requested, for next release, database

#989 - yeast genes that have naming patterns not allowed by load network from database function

Issue - State: closed - Opened by kdahlquist over 2 years ago - 5 comments
Labels: bug, priority 0, review requested, for next release, database

#988 - Onboard the team with a locally running database

Issue - State: closed - Opened by dondi over 2 years ago - 7 comments
Labels: priority 0, database

#987 - Beta

Pull Request - State: closed - Opened by Sarronnn over 2 years ago - 1 comment

#986 - Updating browser compatibility info

Issue - State: closed - Opened by kdahlquist over 2 years ago - 1 comment
Labels: documentation, priority 0

#984 - Bad interaction between node coloring, load network from database, and export to Excel

Issue - State: closed - Opened by kdahlquist over 2 years ago - 2 comments
Labels: bug, functionality, priority 0, review requested, for next release

#983 - Filename and display nomenclature for YeastMine-generated Networks

Issue - State: closed - Opened by kdahlquist over 2 years ago - 2 comments
Labels: priority 0, enhancement

#982 - Clarifying Load from Database modal

Issue - State: closed - Opened by kdahlquist over 2 years ago - 6 comments
Labels: priority 0.5, review requested, for next release, enhancement

#981 - Export to Excel modal gets messed up if cancel out of it and go back in

Issue - State: closed - Opened by kdahlquist over 2 years ago - 2 comments
Labels: bug, priority 0, review requested, for next release

#980 - Intermittent bug with Load from Database modal: cursor doesn't register in search field initially

Issue - State: closed - Opened by kdahlquist over 2 years ago - 5 comments
Labels: bug, functionality, priority 0

#979 - Review latest branches and prune as needed

Issue - State: closed - Opened by dondi over 2 years ago - 1 comment
Labels: priority 0, logistics

#978 - Clarifying Export-to-Excel interface

Issue - State: closed - Opened by kdahlquist over 2 years ago - 13 comments
Labels: bug, functionality, priority 0, review requested, for next release, enhancement

#977 - Node menu inactivated after loading network from database

Issue - State: closed - Opened by kdahlquist over 2 years ago - 18 comments
Labels: bug, functionality, priority 0, review requested

#976 - Demo indicators appear to out of sync

Issue - State: closed - Opened by dondi over 2 years ago - 3 comments
Labels: bug, priority 0

#975 - v6.0.0

Pull Request - State: closed - Opened by dondi over 2 years ago

#974 - Release v6.0.0

Issue - State: closed - Opened by dondi over 2 years ago - 4 comments
Labels: for next release

#973 - Scheduling GRNsight meeting for Fall 2022

Issue - State: closed - Opened by dondi over 2 years ago - 9 comments

#972 - creating network from database miscounts edges in display of name

Issue - State: closed - Opened by kdahlquist over 2 years ago - 2 comments
Labels: bug, functionality, priority 0.5

#971 - Apweiler data needs to be uploaded to backend expression database

Issue - State: closed - Opened by kdahlquist over 2 years ago - 15 comments
Labels: priority 0, review requested, for next release, database