Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / dondi/GRNsight issues and pull requests
#1116 - Fix script to correctly update the genes
Pull Request -
State: open - Opened by ntran18 24 days ago
#1115 - Scheduling Fall group meetings
Issue -
State: closed - Opened by kdahlquist about 2 months ago
- 4 comments
Labels: priority 0, logistics
#1114 - Fixing PR #1112 to Restrict D-pad
Pull Request -
State: closed - Opened by ceciliazaragoza 6 months ago
#1113 - #1106 Writing Scripts for Updating Database and Refactor Code
Pull Request -
State: closed - Opened by ntran18 6 months ago
#1112 - Issue #1083 When check restrict graph to viewport the D-pad and zoom slider do not disappear and graph cannot exceed viewport
Pull Request -
State: closed - Opened by ceciliazaragoza 6 months ago
- 5 comments
#1111 - #1106 fixing off-by-one column issue.
Pull Request -
State: closed - Opened by ntran18 6 months ago
#1110 - Export Data & Image Fix #1109 (Issue #1081 Node Coloring Top Menu Availability of Options)
Pull Request -
State: closed - Opened by ceciliazaragoza 6 months ago
#1109 - Issue #1081 Node Coloring Top Menu Availability of Options
Pull Request -
State: closed - Opened by ceciliazaragoza 6 months ago
- 2 comments
#1108 - When exporting to Excel, the option to export the "network_weights" sheet should be available at all times
Issue -
State: open - Opened by kdahlquist 6 months ago
Labels: bug, functionality, priority 0.5
#1107 - When exporting to Excel, default value for alpha on the optimization_parameters sheet should be 0.02, not 0.002
Issue -
State: open - Opened by kdahlquist 6 months ago
Labels: feature request, functionality, priority 0.5
#1106 - ERT1 not in network database
Issue -
State: open - Opened by kdahlquist 6 months ago
- 22 comments
Labels: bug, priority 0, for next release, database
#1105 - Update network and protein protein database
Pull Request -
State: closed - Opened by ntran18 7 months ago
- 1 comment
#1104 - Update People page with UGRS in-person photo
Issue -
State: closed - Opened by dondi 7 months ago
- 4 comments
Labels: web site, priority 0
#1103 - Error with import function on beta
Issue -
State: closed - Opened by nchun2 7 months ago
- 2 comments
Labels: bug
#1102 - Further testing opening sif files for GRNs and PPIs
Issue -
State: open - Opened by kdahlquist 7 months ago
Labels: bug, functionality, priority 0.5
#1101 - Fix Export SIF
Pull Request -
State: closed - Opened by ntran18 7 months ago
- 1 comment
#1100 - Fix issue #1099 to stop loading demo 1 when exporting sif, graphml
Pull Request -
State: closed - Opened by ntran18 7 months ago
- 1 comment
#1099 - Exporting file reload demo 1
Issue -
State: closed - Opened by ntran18 7 months ago
- 1 comment
Labels: bug, priority 0, for next release
#1098 - Importing new files has some delays
Issue -
State: open - Opened by ntran18 7 months ago
Labels: bug, priority 0.5
#1097 - Renamed cell A1 named for protein protein interaction network mode #1054
Pull Request -
State: closed - Opened by ntran18 7 months ago
#1096 - Fixing the network mode for export function #1079
Pull Request -
State: closed - Opened by ntran18 7 months ago
#1095 - Look into Travis user limit for free plan
Issue -
State: open - Opened by dondi 8 months ago
- 1 comment
Labels: priority 0
#1094 - Continue with #1079, fixing the export for sif and make the variable consistent with other files
Pull Request -
State: closed - Opened by ntran18 8 months ago
- 4 comments
#1093 - D-pad, zoom slider, and cursor drag do not move graph after export to SVG
Issue -
State: open - Opened by ceciliazaragoza 8 months ago
- 3 comments
Labels: bug, priority 1
#1092 - Issue #1083 D-pad, zoom, and cursor drag now working when graph view restricted to viewport
Pull Request -
State: closed - Opened by ceciliazaragoza 8 months ago
- 3 comments
#1091 - Importing empty network with network tab of Excel file crashes the website
Issue -
State: closed - Opened by ntran18 8 months ago
- 2 comments
Labels: bug, priority 0, for next release
#1090 - make LMU URS poster so it can be printed before the March 15 symposium
Issue -
State: closed - Opened by kdahlquist 8 months ago
- 36 comments
Labels: documentation, priority 0, logistics
#1089 - Update network database with new data from Intermine/SGD
Issue -
State: open - Opened by kdahlquist 8 months ago
- 9 comments
Labels: priority 0, database
#1088 - Setup ssh keys to facilitate GRNsight deployments
Issue -
State: open - Opened by dondi 8 months ago
- 1 comment
Labels: priority 0, logistics
#1087 - Modify cell A1 to detect network mode either grn or protein-protein-interaction #1054
Pull Request -
State: open - Opened by ntran18 8 months ago
#1086 - Style Updates from Issue #1002
Pull Request -
State: closed - Opened by ceciliazaragoza 9 months ago
- 1 comment
#1085 - Fixing issue #1072.
Pull Request -
State: open - Opened by ntran18 9 months ago
- 3 comments
#1084 - Test export/import cycle for GRNsight-->GRNsight/GRNmap
Issue -
State: open - Opened by kdahlquist 9 months ago
Labels: functionality, testing, priority 0
#1083 - Checking restrict graph to viewport makes the D-pad and zoom slider on the viewport disappear
Issue -
State: closed - Opened by kdahlquist 9 months ago
- 12 comments
Labels: bug, functionality, priority 0, review requested
#1082 - Selecting a particular sequence of view options causes graph to shrink to the size of one node
Issue -
State: open - Opened by kdahlquist 9 months ago
- 2 comments
Labels: bug, priority 0.5, graph layout
#1081 - node coloring top menu availability of options
Issue -
State: closed - Opened by kdahlquist 9 months ago
- 1 comment
Labels: bug, priority 0, review requested, node coloring
#1080 - node coloring glitch when loading network from database
Issue -
State: open - Opened by kdahlquist 9 months ago
- 5 comments
Labels: bug, priority 0, node coloring
#1079 - Problems opening .sif and .graphml files
Issue -
State: closed - Opened by kdahlquist 9 months ago
- 13 comments
Labels: bug, priority 0.5, for next release
#1078 - Onboarding for Cecilia & A’Kaia
Issue -
State: closed - Opened by dondi 9 months ago
- 22 comments
Labels: priority 0
#1077 - Release checklist for v7.1
Issue -
State: open - Opened by dondi 10 months ago
- 12 comments
Labels: priority 0
#1076 - Meeting time for Spring 2024 semester
Issue -
State: closed - Opened by kdahlquist 10 months ago
- 9 comments
Labels: priority 0, logistics
#1075 - Adding PPI demo #1065
Pull Request -
State: closed - Opened by ntran18 10 months ago
#1074 - When GRN loaded from file with no expression data, nodes are colored gray instead of white
Issue -
State: open - Opened by kdahlquist 10 months ago
- 4 comments
Labels: bug, priority 0, node coloring
#1073 - Adding changes for #1072 issue
Pull Request -
State: closed - Opened by ntran18 10 months ago
#1072 - Review PPI database-loading script
Issue -
State: closed - Opened by dondi 11 months ago
- 4 comments
Labels: priority 0, review requested, database
#1071 - Disclaimer for lack of node-coloring PPI support
Issue -
State: open - Opened by dondi 11 months ago
- 2 comments
Labels: priority 0, node coloring, network
#1070 - Export features should factor Network Mode more deeply
Issue -
State: open - Opened by dondi 11 months ago
Labels: priority 0.5, network
#1069 - Network Mode needs to adjust more aspects of a current network
Issue -
State: open - Opened by dondi 11 months ago
- 1 comment
Labels: priority 0.5, network
#1068 - Node coloring does not support protein-level expression data
Issue -
State: open - Opened by dondi 11 months ago
Labels: priority 1, node coloring, network
#1067 - Activate Network mode at all times
Issue -
State: open - Opened by dondi 11 months ago
- 2 comments
Labels: priority 1, network
#1066 - Adjust Open File for varying network modes (GRN/PPI)
Issue -
State: open - Opened by dondi 11 months ago
Labels: priority 0.5, network
#1065 - Add PPI demo
Issue -
State: closed - Opened by dondi 11 months ago
- 5 comments
Labels: priority 0, review requested, network
#1064 - Fixing search symbol #1050
Pull Request -
State: closed - Opened by ntran18 11 months ago
#1063 - Making the search button bigger #1050
Pull Request -
State: closed - Opened by ntran18 11 months ago
#1062 - Update local setups to include grnsettings
Issue -
State: closed - Opened by dondi 12 months ago
- 4 comments
Labels: functionality, priority 0, database
#1061 - Deeper integration of distinct network types
Issue -
State: closed - Opened by dondi 12 months ago
- 4 comments
Labels: functionality, priority 0
#1060 - New tests are needed for protein-to-protein-specific networks
Issue -
State: open - Opened by dondi 12 months ago
Labels: testing
#1059 - Export to SVG modifies the graph itself
Issue -
State: open - Opened by dondi 12 months ago
Labels: bug, priority 1
#1058 - Modify cell A1 name #1054
Pull Request -
State: closed - Opened by ntran18 12 months ago
- 1 comment
#1057 - Modify the name of cell A1 of exporting Excel workbook #1054
Pull Request -
State: closed - Opened by ntran18 12 months ago
- 1 comment
#1056 - Fixing other modals in #1029 issue
Pull Request -
State: closed - Opened by ntran18 12 months ago
#1055 - Node Coloring Coordination between top menu and side panel
Issue -
State: open - Opened by ntran18 12 months ago
- 3 comments
Labels: feature request, priority 1, node coloring
#1054 - Modify the name of cell A1 of exporting Excel workbook
Issue -
State: closed - Opened by ntran18 12 months ago
- 11 comments
Labels: feature request, priority 0, network
#1053 - Missing expression data for a gene in database causes UI problems
Issue -
State: open - Opened by ntran18 12 months ago
Labels: bug, priority 1, database
#1052 - Fixing bug #1029
Pull Request -
State: closed - Opened by ntran18 12 months ago
- 1 comment
#1051 - Maika 1033
Pull Request -
State: closed - Opened by ntran18 about 1 year ago
- 3 comments
#1050 - Search (magnifying glass) button is too small in Load from Database modal
Issue -
State: closed - Opened by kdahlquist about 1 year ago
- 3 comments
Labels: bug, priority 0, review requested
#1049 - Fix bug #1034
Pull Request -
State: closed - Opened by ntran18 about 1 year ago
#1048 - Fixing bug #1033
Pull Request -
State: closed - Opened by ntran18 about 1 year ago
- 1 comment
#1047 - Join LMUCS Slack
Issue -
State: closed - Opened by dondi about 1 year ago
- 2 comments
Labels: priority 0, review requested
#1046 - Get GRNsight running locally on your machine
Issue -
State: closed - Opened by dondi about 1 year ago
- 18 comments
Labels: priority 0, logistics
#1045 - Fix bug #1016
Pull Request -
State: closed - Opened by ntran18 about 1 year ago
- 1 comment
#1044 - Look into Coveralls integration
Issue -
State: open - Opened by dondi about 1 year ago
- 2 comments
Labels: bug
#1043 - Follow the new student onboarding checklist
Issue -
State: closed - Opened by dondi about 1 year ago
- 1 comment
Labels: priority 0, review requested
#1042 - Scheduling GRNsight meeting for Fall 2023
Issue -
State: closed - Opened by kdahlquist about 1 year ago
- 3 comments
Labels: priority 0, logistics
#1041 - Check out this solution to keeping library versions straight in R
Issue -
State: open - Opened by kdahlquist over 1 year ago
Labels: enhancement
#1040 - Fixed glyphicon rendering
Pull Request -
State: closed - Opened by Onariaginosa over 1 year ago
#1039 - v7.0.0 Protein-Protein Physical Interactions
Pull Request -
State: closed - Opened by Onariaginosa over 1 year ago
#1038 - #1016
Pull Request -
State: closed - Opened by ntran18 over 1 year ago
#1037 - #992 Adding a grnsettings table to database
Pull Request -
State: closed - Opened by ahmad00m over 1 year ago
- 2 comments
#1036 - #1016
Pull Request -
State: closed - Opened by ntran18 over 1 year ago
#1035 - Change order of Yeastmine versions in generate GRN modal
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 2 comments
Labels: priority 0, enhancement
#1034 - Restrict Graph to Viewport Bug
Issue -
State: closed - Opened by Sarronnn over 1 year ago
- 7 comments
Labels: bug, functionality, priority 0, review requested
#1033 - Can only change dataset from bottom option, not top
Issue -
State: closed - Opened by Sarronnn over 1 year ago
- 4 comments
Labels: bug, functionality, priority 0, review requested
#1032 - v6.0.7
Pull Request -
State: closed - Opened by Onariaginosa over 1 year ago
#1031 - Release v6.0.7 to production
Issue -
State: closed - Opened by dondi over 1 year ago
- 7 comments
Labels: priority 0, for next release
#1030 - Change names for environment variables pertaining to the database
Issue -
State: open - Opened by Onariaginosa over 1 year ago
Labels: priority 1, refactor, database
#1029 - Modal closes unexpectedly when click and drag the modal window with the mouse
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 10 comments
Labels: bug, priority 0, review requested
#1028 - protein-protein interaction UI refinements
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 8 comments
Labels: feature request, priority 0
#1027 - GRNsight Website certificate is expired
Issue -
State: closed - Opened by Onariaginosa over 1 year ago
- 1 comment
#1026 - Pg version change
Pull Request -
State: closed - Opened by ahmad00m over 1 year ago
- 2 comments
#1025 - #1022 #1023 #1024 completed. #1020 WIP
Pull Request -
State: closed - Opened by Onariaginosa over 1 year ago
Labels: for next release
#1024 - Bug: None of the edges are displaying
Issue -
State: closed - Opened by Onariaginosa over 1 year ago
- 1 comment
Labels: bug, priority 0, review requested, for next release
#1023 - Edit the information in the menu bar to say GRN source
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 2 comments
Labels: functionality, priority 0, for next release
#1022 - Data refresh for network database
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 3 comments
Labels: priority 0, review requested, for next release, database
#1021 - LMU URS 2023
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 30 comments
#1020 - Investigate Yeastmine for information on Protein - Protein Interactions Mode
Issue -
State: closed - Opened by Onariaginosa over 1 year ago
- 10 comments
Labels: database
#1019 - #1018 consolidated export to excel
Pull Request -
State: closed - Opened by Onariaginosa over 1 year ago
Labels: for next release
#1018 - Export to Excel isn't actually exporting an unweighted graph when selected
Issue -
State: closed - Opened by Onariaginosa over 1 year ago
- 3 comments
Labels: bug, review requested, for next release
#1017 - update Client Side Testing Document wiki to be compatible with multiple featureList.json files
Issue -
State: closed - Opened by kdahlquist over 1 year ago
- 1 comment
Labels: documentation, priority 0