Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / donaldlab/OSPREY3 issues and pull requests

#100 - Designs with Cystines crash

Issue - State: closed - Opened by gusennan about 5 years ago
Labels: bug

#99 - Osprey crashes when calculating GMEC of butane

Issue - State: closed - Opened by gusennan over 5 years ago - 2 comments
Labels: bug

#98 - generating a custom template library

Issue - State: closed - Opened by castephens over 5 years ago - 4 comments

#97 - Ligand strand definition

Issue - State: closed - Opened by castephens over 5 years ago

#96 - GLIBC Importerror

Issue - State: closed - Opened by castephens over 5 years ago - 2 comments

#95 - `osprey.start()` loops infinitely when JAVA_HOME is set incorrectly

Issue - State: closed - Opened by gusennan over 5 years ago
Labels: bug

#94 - Clean up issues found by Jeff!

Pull Request - State: closed - Opened by eternityslyre almost 6 years ago

#93 - NullPointer using MARK*

Issue - State: closed - Opened by alowegard almost 6 years ago

#92 - Mark star optimization+master merge

Pull Request - State: closed - Opened by eternityslyre almost 6 years ago

#91 - update gradle version to 4.10.1

Pull Request - State: closed - Opened by gusennan about 6 years ago

#90 - import Osprey Error

Issue - State: closed - Opened by sinuxs about 6 years ago - 4 comments

#89 - K* example script

Issue - State: closed - Opened by gusennan about 6 years ago - 3 comments

#88 - pip2 removes --use-wheel option in 10.1

Issue - State: closed - Opened by gusennan about 6 years ago - 3 comments

#87 - fix bug when forgetting root node of SMA* tree

Pull Request - State: closed - Opened by alowegard about 6 years ago

#86 - EWAK* fixed

Pull Request - State: closed - Opened by alowegard over 6 years ago

#85 - EWAK* fixed and ready

Pull Request - State: closed - Opened by alowegard over 6 years ago

#84 - PMat

Pull Request - State: closed - Opened by alowegard over 6 years ago

#83 - Merge pull request #82 from donaldlab/master

Pull Request - State: closed - Opened by alowegard over 6 years ago

#82 - Get latest commits

Pull Request - State: closed - Opened by alowegard over 6 years ago

#81 - Small updates

Pull Request - State: closed - Opened by alowegard over 6 years ago

#80 - Anna - adding EWAKStar to the master branch

Pull Request - State: closed - Opened by alowegard over 6 years ago

#79 - Anna - adding EWAKStar

Pull Request - State: closed - Opened by alowegard over 6 years ago

#78 - Where did you get the ICC8's secondary structure PDB file from?

Issue - State: closed - Opened by gusennan over 6 years ago - 2 comments

#77 - fix typos

Pull Request - State: closed - Opened by gusennan over 6 years ago - 1 comment

#76 - Update repository location in contributing.rst

Pull Request - State: closed - Opened by gusennan over 6 years ago - 1 comment

#75 - MaxNumConfs and StrandRotTrans

Pull Request - State: closed - Opened by wangsy11 over 6 years ago - 3 comments

#74 - Installation script error

Issue - State: closed - Opened by jkleinj over 6 years ago - 2 comments
Labels: bug

#73 - Python

Pull Request - State: closed - Opened by alowegard over 6 years ago

#72 - check mutfile early

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#71 - individual mutations for ewak

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#70 - Merge remote-tracking branch 'donaldlab/master'

Pull Request - State: closed - Opened by alowegard almost 7 years ago

#69 - EWAK* Output

Pull Request - State: closed - Opened by alowegard almost 7 years ago

#68 - EWAK* Updates

Pull Request - State: closed - Opened by alowegard almost 7 years ago

#67 - Out of Error Memory on gpu-compute7

Issue - State: closed - Opened by eternityslyre almost 7 years ago - 2 comments

#66 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#65 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#64 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#63 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#62 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#61 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#60 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#59 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#58 - Master

Pull Request - State: closed - Opened by lancelot-droid almost 7 years ago

#57 - Master

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#56 - Master

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#55 - bugfixes for gmec ratio

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#54 - updated ewakstar package name

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#53 - added files that i forgot to commit.

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#52 - several small fixes, see notes below

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#51 - initial EWAKStar code

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#50 - moved to log space for k* scores

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#49 - new argument for PDBFileReader

Pull Request - State: closed - Opened by lancelot-droid about 7 years ago

#48 - Jpype problems

Issue - State: closed - Opened by markhallen369 about 7 years ago

#47 - osprey.printGpuInfo() Cuda error

Issue - State: closed - Opened by hnisonoff about 7 years ago - 4 comments

#46 - emat.dat file

Issue - State: closed - Opened by ever4cyth over 7 years ago - 1 comment

#45 - structure generation

Issue - State: closed - Opened by ever4cyth over 7 years ago

#44 - updates to residue ordering

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#43 - bug fixes for msk*

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#42 - small bug fixes for k*; new code for msk*

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#41 - define the protein strand

Issue - State: closed - Opened by ever4cyth over 7 years ago

#40 - more msk* updates

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#39 - printGpuInfo() error

Issue - State: closed - Opened by ever4cyth over 7 years ago

#38 - ms k* updates

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#37 - Perturbations fail at residue termini with addWTRots on

Issue - State: closed - Opened by davidiot over 7 years ago

#36 - no classpath.txt

Issue - State: closed - Opened by ever4cyth over 7 years ago

#35 - sequential residue ordering

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#34 - MSK* stuff; Rudimentary GPU load balancing

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#33 - MSK* stuff; Rudimentary GPU load balancing

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#32 - Tweaks to K* phase2; merge with master

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#31 - more refactoring

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#30 - more msK* refactoring

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#29 - msk* discrete partition function

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#28 - minor updates for msk*

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#27 - optionally suppress warnings when using non-AAs

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#26 - Questions about epsilon value calculation and conformaiton numbers in output file

Issue - State: closed - Opened by wangsy11 over 7 years ago - 2 comments
Labels: bug

#25 - Exhaustive MSK* works with DeePER, can write output pdbs

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#24 - works with deeper

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#22 - Bug in PartialStructureSwitch copy constructor when running DeePER

Issue - State: closed - Opened by lancelot-droid over 7 years ago - 1 comment

#21 - un-broke parallelconfpartitionfunction test cases

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#20 - bug fixes

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#19 - preliminary muktistate ks stuff

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#18 - K* bug fixes, K* refactoring, and removal of unused imports

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#17 - initial multistate-kstar code

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#16 - Writting down top conformations

Issue - State: closed - Opened by wangsy11 over 7 years ago - 1 comment

#15 - fix test to check whether deeper is running

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#14 - merge inverted pruning matrix corner case

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#13 - less pruning for single sequence

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#12 - single seq. typedep pruning eliminates more rotamers

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#11 - fixed recently introduced counting error

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#10 - tiny bug and naming fixes

Pull Request - State: closed - Opened by lancelot-droid over 7 years ago

#9 - no compile target

Issue - State: closed - Opened by ever4cyth about 8 years ago

#8 - i forgot to commit 2 files. sorry.

Pull Request - State: closed - Opened by lancelot-droid about 8 years ago

#7 - did some output cleanup for k* and bypass the ramacheck for deeper

Pull Request - State: closed - Opened by lancelot-droid about 8 years ago - 1 comment

#6 - build script

Issue - State: closed - Opened by ever4cyth about 8 years ago

#5 - added k* code and test cases.

Pull Request - State: closed - Opened by lancelot-droid about 8 years ago

#4 - Refactoring (and preliminary, orthogonal PDB alternate parsing changes)

Pull Request - State: closed - Opened by eternityslyre almost 9 years ago

#3 - Delete 1CC8.emat.dat

Pull Request - State: closed - Opened by lancelot-droid about 9 years ago

#2 - getting rid of test subdirectory

Pull Request - State: closed - Opened by lancelot-droid about 9 years ago - 1 comment

#1 - ok

Pull Request - State: closed - Opened by lancelot-droid about 9 years ago