dnbaker/dashing2 issues and pull requests

#87 - Can I merge to sketches database?

Issue - State: open - Opened by valflanza 3 months ago

#86 - Callback

Pull Request - State: closed - Opened by LinoHofstetter 7 months ago

#85 - v2.1.20: Apple Silicon + Edlib fixup

Pull Request - State: closed - Opened by dnbaker 9 months ago

#84 - dashing2 sketch --parse-by-seq doesn't work with --save-kmers

Issue - State: open - Opened by CodeSteph 11 months ago

#83 - --parse-by-seq bug fix + orderminhash bug fix

Pull Request - State: closed - Opened by dnbaker over 1 year ago

#82 - Sketching/comparing never completes on specific Fasta file

Issue - State: closed - Opened by matnguyen over 1 year ago - 4 comments

#81 - Reduce memory usage in --parse-by-seq

Pull Request - State: closed - Opened by dnbaker over 1 year ago

#80 - Expected memory usage

Issue - State: open - Opened by matnguyen over 1 year ago - 4 comments

#79 - Multi-fasta functionality

Issue - State: closed - Opened by matnguyen over 1 year ago - 3 comments

#78 - Compilation update: namespace-quality fmtlib usage.

Pull Request - State: closed - Opened by dnbaker over 1 year ago

#77 - Segmentation fault error

Issue - State: open - Opened by kaysahu over 1 year ago - 1 comment

#76 - please allow builds without recursive cloning

Issue - State: open - Opened by joelb123 over 1 year ago - 1 comment

#75 - compilation fails under gcc > 12

Issue - State: open - Opened by joelb123 over 1 year ago - 1 comment

#74 - Create LICENSE

Pull Request - State: closed - Opened by dnbaker over 1 year ago

#73 - Please include license file

Issue - State: open - Opened by joelb123 over 1 year ago - 1 comment

#72 - Bug fixes, remove -flto in static builds + logging changes

Pull Request - State: closed - Opened by dnbaker almost 2 years ago

#71 - dashing2 for metagenome

Issue - State: open - Opened by jianshu93 almost 2 years ago - 1 comment

#70 - Cleanup pt2

Pull Request - State: closed - Opened by dnbaker almost 2 years ago

#69 - Cleanup

Pull Request - State: closed - Opened by dnbaker almost 2 years ago

#68 - --outprefix option and cmp subcommand are invaild

Issue - State: open - Opened by XiaomingXu1995 almost 2 years ago - 7 comments

#67 - dartminhash implenmentation

Issue - State: open - Opened by jianshu93 almost 2 years ago - 3 comments

#66 - M1 support + --union-size output option.

Pull Request - State: closed - Opened by dnbaker almost 2 years ago

#65 - Silicon/M1/M2/arm64?

Issue - State: closed - Opened by gaboentropy about 2 years ago - 5 comments

#64 - Add CodeQL workflow for GitHub code scanning

Pull Request - State: closed - Opened by lgtm-com[bot] about 2 years ago

#63 - Differences in mash distances between dashing2 vs dashing1/mash

Issue - State: closed - Opened by tsp-kucbd over 2 years ago - 6 comments

#62 - Fix bug in cmp --presketched mode

Pull Request - State: closed - Opened by dnbaker over 2 years ago

#61 - long flag sanity check, plus missing 'L:' in getopt_long

Pull Request - State: closed - Opened by dnbaker over 2 years ago

#60 - Specifying `--verbose` tends to give segmentation fault

Issue - State: closed - Opened by BenLangmead over 2 years ago - 2 comments

#59 - `sketch -L` doesn't work

Issue - State: closed - Opened by BenLangmead over 2 years ago - 1 comment

#58 - aminoacid distance to AAI?

Issue - State: open - Opened by jianshu93 over 2 years ago - 2 comments

#57 - What are the units for `--countmin-size`?

Issue - State: open - Opened by BenLangmead over 2 years ago - 1 comment

#56 - Fix if/else when setting # superregisters to sample

Pull Request - State: closed - Opened by BenLangmead over 2 years ago - 1 comment

#55 - Print cardinality estimate

Issue - State: open - Opened by BenLangmead over 2 years ago

#54 - Avoid double-printing argv[0]

Pull Request - State: closed - Opened by BenLangmead over 2 years ago

#53 - No $(LIB) with -c

Pull Request - State: closed - Opened by BenLangmead over 2 years ago

#52 - Switch to PMH3, add cmp usage.

Pull Request - State: closed - Opened by dnbaker almost 3 years ago - 1 comment

#51 - no dashing2 cmp help info

Issue - State: open - Opened by jianshu93 almost 3 years ago - 2 comments

#50 - ARM neon support.

Issue - State: open - Opened by jianshu93 almost 3 years ago - 1 comment

#49 - large Metagenome comparison bad_alloc

Issue - State: open - Opened by jianshu93 almost 3 years ago - 2 comments

#48 - D10

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#47 - how to get assymetric matrix for containment index?

Issue - State: open - Opened by dejsha about 3 years ago - 2 comments

#46 - Use mash distance for exact k-mer set/countdict comparisons

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#46 - Use mash distance for exact k-mer set/countdict comparisons

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#45 - --mash-distance outputs similarity with --set option

Issue - State: open - Opened by dejsha about 3 years ago - 3 comments

#45 - --mash-distance outputs similarity with --set option

Issue - State: open - Opened by dejsha about 3 years ago - 3 comments

#44 - Dev8

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#43 - Dev7

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#42 - Dev6 - Contain main tweaks

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#42 - Dev6 - Contain main tweaks

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#41 - Dev5: Count-Filtered pre-set SetSketch, Better Caching

Pull Request - State: closed - Opened by dnbaker about 3 years ago - 1 comment

#40 - Fqfeeder contain

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#39 - Sketch compressed - bug fix + byseq

Pull Request - State: closed - Opened by dnbaker about 3 years ago - 1 comment

#38 - Add direct setsketch generation options

Pull Request - State: closed - Opened by dnbaker about 3 years ago - 1 comment

#37 - Add fasta-format de-duplication in --parse-by-seq mode

Pull Request - State: closed - Opened by dnbaker about 3 years ago

#36 - support for proteome? but not just genome in nt

Issue - State: open - Opened by jianshu93 about 3 years ago - 18 comments

#36 - support for proteome? but not just genome in nt

Issue - State: open - Opened by jianshu93 about 3 years ago - 18 comments