dnanexus/wdlTools issues and pull requests

#247 - How to call womtool in a Java web project.

Issue - State: closed - Opened by wsl-ylhy about 1 year ago - 1 comment

#246 - APPS-912 version error msg fix

Pull Request - State: closed - Opened by Gvaihir about 1 year ago

#245 - APPS-1341 frag inputs implicit Null

Pull Request - State: closed - Opened by Gvaihir over 1 year ago

#244 - APPS-1341 frag input default to null

Pull Request - State: closed - Opened by Gvaihir over 1 year ago

#243 - Allow "format" to read STDIN

Issue - State: open - Opened by kyclark over 1 year ago

#242 - Add "format" option for indentation level

Issue - State: open - Opened by kyclark over 1 year ago

#241 - Add support for multiline strings in `development`

Pull Request - State: open - Opened by jdidion over 1 year ago

#240 - Multiline string grammar

Pull Request - State: closed - Opened by jdidion over 1 year ago

#239 - Post release 0.17.15

Pull Request - State: closed - Opened by Gvaihir over 1 year ago

#238 - Backport multi-line strings to WDL 1.2

Issue - State: open - Opened by jdidion over 1 year ago

#237 - APPS-1494 Minor variable rename for clarity.

Pull Request - State: closed - Opened by r-i-v-a over 1 year ago - 2 comments

#236 - Post release 0.17.14

Pull Request - State: closed - Opened by Gvaihir over 1 year ago

#235 - APPS-1421 dir output

Pull Request - State: closed - Opened by Gvaihir almost 2 years ago

#234 - APPS-1443 Post release 0.17.13

Pull Request - State: closed - Opened by Gvaihir almost 2 years ago

#233 - APPS-1381 Fix struct change recompile

Pull Request - State: closed - Opened by Gvaihir almost 2 years ago

#232 - APPS-1353 V_Struct to V_Directory coercion

Pull Request - State: closed - Opened by Gvaihir almost 2 years ago

#231 - Fix for #230

Pull Request - State: closed - Opened by jdidion almost 2 years ago - 2 comments

#230 - Error when setting `Runtime.memory` as a string in a `development` version task

Issue - State: closed - Opened by jdidion almost 2 years ago - 2 comments

#229 - Add coercion for `V_Directory`

Pull Request - State: closed - Opened by jdidion almost 2 years ago

#228 - APPS-1354 post-release 0.17.12

Pull Request - State: closed - Opened by Gvaihir almost 2 years ago

#227 - APPS-1318 Undeclared outputs of stdlib functions

Pull Request - State: closed - Opened by Gvaihir almost 2 years ago - 1 comment

#226 - Missing coercion of V_Directory

Issue - State: closed - Opened by jdidion about 2 years ago - 4 comments

#225 - Post release 0.17.11

Pull Request - State: closed - Opened by commandlinegirl about 2 years ago

#224 - APPS-1154 update release notes of preserving docker container for debugging

Pull Request - State: closed - Opened by YuxinShi0423 about 2 years ago

#223 - APPS-1154 keep container after docker run

Pull Request - State: closed - Opened by YuxinShi0423 about 2 years ago

#222 - Post release 0.17.10

Pull Request - State: closed - Opened by commandlinegirl about 2 years ago

#221 - APPS-1177 Update native instance override indirect

Pull Request - State: closed - Opened by Gvaihir about 2 years ago

#220 - Post release 0.17.9

Pull Request - State: closed - Opened by commandlinegirl about 2 years ago

#219 - Release 0.17.9

Pull Request - State: closed - Opened by commandlinegirl about 2 years ago

#218 - APPS-1149 optional elements in structs

Pull Request - State: closed - Opened by YuxinShi0423 about 2 years ago - 5 comments

#217 - format sub-command removes some comments

Issue - State: open - Opened by wholtz over 2 years ago

#216 - format sub command errors on instantiation of structs

Issue - State: open - Opened by wholtz over 2 years ago - 1 comment

#215 - Inconsistent output from wdltools format

Issue - State: open - Opened by wholtz over 2 years ago

#214 - format subcommand throws error when file ends in a comment

Issue - State: open - Opened by wholtz over 2 years ago

#213 - APPS-994 Update frag applet reuse

Pull Request - State: closed - Opened by Gvaihir over 2 years ago - 1 comment

#212 - Post release 0.17.8

Pull Request - State: closed - Opened by commandlinegirl over 2 years ago

#211 - APPS-1110 Update releasing documentation

Pull Request - State: closed - Opened by commandlinegirl over 2 years ago

#210 - Cannot resolve lint P004 "A top-level element is indented"

Issue - State: open - Opened by wholtz over 2 years ago

#209 - update GHA delete-package-versions to v2

Pull Request - State: closed - Opened by YuxinShi0423 over 2 years ago

#208 - Apps 1120 evaluate unused inputs

Pull Request - State: closed - Opened by YuxinShi0423 over 2 years ago

#207 - APPS-1109 Remove Sonatype Nexus publishing instructions from dev docs; we don't publish there anymore.

Pull Request - State: closed - Opened by r-i-v-a over 2 years ago

#206 - APPS-1052 Missing outputs with task output struct & assignment to optional variable

Pull Request - State: closed - Opened by r-i-v-a over 2 years ago

#205 - APPS-1024 update scalafmt and sbtscalafmt

Pull Request - State: closed - Opened by YuxinShi0423 over 2 years ago

#204 - APPS-1026 Security | Update sbt to 1.6.1.

Pull Request - State: closed - Opened by r-i-v-a over 2 years ago - 1 comment

#203 - Post-release-0.17.7

Pull Request - State: closed - Opened by jdidion over 2 years ago

#202 - APPS-1021 correctly attach to docker stdout/stderr

Pull Request - State: closed - Opened by jdidion over 2 years ago

#201 - Add string literal type to ANTLR4 grammar and use it for import URI

Issue - State: open - Opened by jdidion over 2 years ago

#200 - Support octal and hex in integer literal in ANTLR4 grammar

Issue - State: open - Opened by jdidion over 2 years ago

#199 - APPS-1020 Edit dev docs to say $ brew install adoptopenjdk11 --cask.

Pull Request - State: closed - Opened by r-i-v-a over 2 years ago

#198 - Post-release-0.17.6

Pull Request - State: closed - Opened by jdidion over 2 years ago

#197 - APPS-955 Jdk11

Pull Request - State: closed - Opened by jdidion over 2 years ago

#196 - APPS-957 Logging and stderr fixes

Pull Request - State: closed - Opened by jdidion over 2 years ago

#195 - APPS-1004 Update Scala projects to sbt v1.5.7.

Pull Request - State: closed - Opened by r-i-v-a over 2 years ago - 1 comment

#194 - Post release 0.17.5

Pull Request - State: closed - Opened by jdidion over 2 years ago

#193 - APPS-970 use PosixPath

Pull Request - State: closed - Opened by jdidion over 2 years ago

#192 - Parser bug when upgrading from draft-2 to v1.1

Issue - State: open - Opened by mihirsamdarshi over 2 years ago

#191 - Release 0.17.4

Pull Request - State: closed - Opened by jdidion over 2 years ago

#190 - APPS-930 bugfix in `eval.Meta`

Pull Request - State: closed - Opened by jdidion over 2 years ago

#189 - Release 0.17.3

Pull Request - State: closed - Opened by jdidion over 2 years ago

#188 - Release 0.17.2

Pull Request - State: closed - Opened by jdidion over 2 years ago

#187 - update github org

Pull Request - State: closed - Opened by jdidion over 2 years ago

#186 - add permissions

Pull Request - State: closed - Opened by jdidion over 2 years ago

#185 - APPS-902 Make GHA manually runnable again.

Pull Request - State: closed - Opened by r-i-v-a over 2 years ago

#184 - APPS-873 do not follow aliases forever

Pull Request - State: closed - Opened by jdidion over 2 years ago

#183 - Release 0.17.1

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago - 1 comment

#182 - Increment develop version.

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago

#181 - APPS-813 parse default and sep with = token

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#180 - Increment develop version.

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago

#179 - Release wdlTools 0.17.0

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago

#178 - APPS-803 Sonatype Nexus publishing setup readme.

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago - 1 comment

#177 - evaluate expressions in order

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#176 - Return codes2

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#175 - Release 0.16.0

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago - 1 comment

#174 - Increment develop version.

Pull Request - State: closed - Opened by r-i-v-a almost 3 years ago

#173 - Support runtime and hint overrides

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#172 - Release 0.15.0

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#171 - always allow coercion to T_Any

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#170 - fix default memory value for development

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#169 - Use of reserved keyword as name of input/output results in an uninformative error message

Issue - State: open - Opened by dolevrahat almost 3 years ago - 1 comment

#168 - fix formatting of single-line expressions in code generator/formatter

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#167 - add Runtime.returnCodes accessor

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#166 - Differentiate evaluation errors and exceptions

Pull Request - State: closed - Opened by jdidion almost 3 years ago

#165 - Auto fix map literal

Pull Request - State: closed - Opened by jdidion almost 3 years ago