Ecosyste.ms: Issues

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GitHub / dnanexus/dxda issues and pull requests

#80 - Bump version to 0.5.12 & fix GHA release docker build action

Pull Request - State: closed - Opened by wormsik almost 2 years ago

#79 - GHA: Build and push tagged Docker image on release

Pull Request - State: closed - Opened by wormsik almost 2 years ago

#78 - Fix docker build and push action

Pull Request - State: closed - Opened by kpjensen almost 2 years ago

#77 - DEVEX-2207 Improve context canceled error handling

Pull Request - State: closed - Opened by wormsik almost 2 years ago

#76 - Fix docker build

Pull Request - State: closed - Opened by wormsik almost 2 years ago

#75 - authentication - order of preference

Issue - State: open - Opened by aledj2 almost 2 years ago - 1 comment

#74 - Fix version number of v0.5.10 release

Pull Request - State: closed - Opened by kpjensen about 2 years ago

#72 - DEVEX-2148 split_manifest.py: Read/write compressed files in binary mode

Pull Request - State: closed - Opened by wormsik about 2 years ago - 1 comment

#71 - split_manifest.py not working under Python3

Issue - State: closed - Opened by GrassmannLab about 2 years ago

#70 - Failed to build docker image

Issue - State: closed - Opened by TriLe965 about 2 years ago - 1 comment

#69 - DEVEX-2163 Retry once for 10 minute connection context cancel

Pull Request - State: closed - Opened by kpjensen about 2 years ago

#68 - DXDA binary for arm64

Issue - State: open - Opened by zawadal over 2 years ago

#67 - split_manifest.py can't parse mainfest created by create_manifest.py

Issue - State: closed - Opened by ljmills over 2 years ago - 2 comments

#66 - Inline compat.py for create_manifest.py and filter_manifest.py

Pull Request - State: closed - Opened by kpjensen almost 3 years ago

#65 - Installation Instructions

Issue - State: open - Opened by akram-mohammed about 3 years ago - 2 comments

#64 - Inline compat.py into all scripts

Issue - State: closed - Opened by jtratner about 3 years ago - 1 comment

#62 - DEVEX-1996 Make UserAgent global var

Pull Request - State: closed - Opened by kpjensen over 3 years ago

#61 - panic: database is locked error when running the tool

Issue - State: open - Opened by kurt-mueller-osumc over 3 years ago - 5 comments

#60 - DEVEX-1960 Retry 502 outside of dnanexus job env

Pull Request - State: closed - Opened by kpjensen over 3 years ago

#59 - DEVEX-1951 Retry ECONNRESET and ECONNREFUSED

Pull Request - State: closed - Opened by kpjensen over 3 years ago

#58 - Create missing files for existing manifest DB

Pull Request - State: closed - Opened by kpjensen almost 4 years ago

#57 - Fix inspect where file is missing

Pull Request - State: closed - Opened by kpjensen almost 4 years ago

#56 - DEVEX-1871 Manifest generation fixes

Pull Request - State: closed - Opened by kpjensen almost 4 years ago

#55 - inspect

Issue - State: closed - Opened by aledj2 almost 4 years ago - 1 comment

#54 - inconsistencies between argument name and outputs

Issue - State: closed - Opened by aledj2 almost 4 years ago - 1 comment

#53 - closed files only?

Issue - State: closed - Opened by aledj2 almost 4 years ago - 1 comment

#52 - DEVEX-1793 Skip file-xxxx/download call optimization

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#51 - DEVEX-1792 Retry dx api calls up to 10 min

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#50 - DEVEX-1788 Retry 10 times for describe calls

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#49 - The manifest needs to be opened in binary format. The default utf-8 m…

Pull Request - State: closed - Opened by sclan over 4 years ago

#48 - DEVEX-1706 Test builds on PR with github actions

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#47 - Migrate to go modules and github action releases

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#46 - Github action to build artifacts

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#45 - DEVEX-996 Windows compatibility

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#44 - DEVEX-1706 Github action to build and publish docker image

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#43 - Do not attempt to close resp body if err

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#42 - DEVEX-1727 Increment progress reporting waitgroup counter

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#41 - DEVEX-1490 symlink fixes

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#40 - Revert "DEVEX-1490 symlink downloads"

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#39 - DEVEX-1490 symlink downloads

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#38 - PTFM-25950 Retry 502 when running in a job

Pull Request - State: closed - Opened by kpjensen over 4 years ago

#37 - DEVEX-1686 Fix early database close issue

Pull Request - State: closed - Opened by geetduggal over 4 years ago

#36 - DEVEX-1691 Read body after checking for error

Pull Request - State: closed - Opened by kpjensen over 4 years ago - 2 comments

#35 - Wait for progress report to stop

Pull Request - State: closed - Opened by orodeh over 4 years ago

#34 - non-deterministic sql panic

Issue - State: closed - Opened by dpark01 over 4 years ago - 12 comments

#33 - Give more descriptive error message when invalid token used

Issue - State: closed - Opened by mjhipp almost 5 years ago - 1 comment

#32 - Improving code sharing

Pull Request - State: closed - Opened by orodeh almost 5 years ago

#31 - Use a mini-library that portably calculates how much RAM the machine …

Pull Request - State: closed - Opened by orodeh almost 5 years ago

#30 - DEVEX-1576 remove major lock

Pull Request - State: closed - Opened by orodeh almost 5 years ago - 1 comment

#29 - Use http net directly

Pull Request - State: closed - Opened by orodeh almost 5 years ago

#28 - DEVEX-1569 dxda large data

Pull Request - State: closed - Opened by orodeh almost 5 years ago

#27 - Devex 1515 oom small instance

Pull Request - State: closed - Opened by orodeh almost 5 years ago

#26 - Devex 1490 symbolic links

Pull Request - State: closed - Opened by orodeh almost 5 years ago

#25 - Update README.md

Pull Request - State: closed - Opened by sclan almost 5 years ago - 1 comment

#24 - old wiki link in README to API token instructions

Issue - State: closed - Opened by japacheco42 almost 5 years ago

#23 - Using client via linux cluster

Issue - State: closed - Opened by ajitjohnson about 5 years ago - 1 comment

#22 - Bypass retryablehttp library error

Pull Request - State: closed - Opened by orodeh about 5 years ago

#21 - Json annotations for the DXEnvironment struct

Pull Request - State: closed - Opened by orodeh about 5 years ago

#20 - Handling 400 error during upload

Pull Request - State: closed - Opened by orodeh over 5 years ago

#19 - Parse error message from dnanexus

Pull Request - State: closed - Opened by orodeh over 5 years ago

#18 - Propagating context

Pull Request - State: closed - Opened by orodeh over 5 years ago

#17 - Retry 500 and Exponential Backoff

Pull Request - State: closed - Opened by orodeh over 5 years ago

#16 - Retry context cancellation

Pull Request - State: closed - Opened by orodeh over 5 years ago

#15 - Code sharing with dxfs2

Pull Request - State: closed - Opened by orodeh over 5 years ago

#14 - Hitting "database is locked" error

Pull Request - State: closed - Opened by orodeh over 5 years ago

#13 - manifest_stats table does not exist

Pull Request - State: closed - Opened by orodeh over 5 years ago - 1 comment

#12 - Replace panics with retries

Pull Request - State: closed - Opened by orodeh over 5 years ago - 1 comment

#11 - create_manifest_bulk.py not working with py3

Issue - State: closed - Opened by sclan over 5 years ago - 1 comment

#10 - Using a DXEnvironment structure

Pull Request - State: closed - Opened by orodeh over 5 years ago - 4 comments

#9 - Help message tweak

Pull Request - State: closed - Opened by asimenos almost 6 years ago

#8 - fatal error: concurrent map read and map writerts

Issue - State: closed - Opened by jgrundstad about 6 years ago - 4 comments

#7 - Basic changes required for perpetual retry on 503

Pull Request - State: closed - Opened by geetduggal about 6 years ago

#6 - dxda available disk space output doesn't appear correct in at least one case

Issue - State: closed - Opened by geetduggal about 6 years ago - 2 comments

#5 - Testing new release packaging

Pull Request - State: closed - Opened by geetduggal about 6 years ago

#4 - DB stored timestamps

Pull Request - State: closed - Opened by orodeh about 6 years ago

#3 - Disk space check

Pull Request - State: closed - Opened by orodeh about 6 years ago - 1 comment

#2 - Set long expiration time

Pull Request - State: closed - Opened by orodeh about 6 years ago

#1 - Set 1y expiration time

Pull Request - State: closed - Opened by orodeh about 6 years ago - 1 comment