dmis-lab/biobert-pytorch issues and pull requests

#46 - Broken link in README.md, section "BioBERT for Named Entity Recognition"

Issue - State: open - Opened by kgene521 22 days ago

#45 - Evaluating trained NER model

Issue - State: open - Opened by aclarkse 6 months ago

#44 - transformers version 3.0.0 installaion failing with Rust lang 1.73.0.

Issue - State: open - Opened by junaruga about 1 year ago - 2 comments

#43 - KeyError: 'label'

Issue - State: open - Opened by Ahenenerbe over 1 year ago - 2 comments

#42 - TypeError: TextInputSequence must be str

Issue - State: open - Opened by Wangrulin-1128 over 1 year ago - 2 comments

#41 - Empty dev.tsv files in the GAD dataset after download

Issue - State: open - Opened by MaxwellWibert over 1 year ago - 2 comments

#40 - Update run_ner.py to fix AttributeError: Trainer object has no attribute is_world_master

Pull Request - State: open - Opened by bayegaspard over 1 year ago

#39 - How to set the parameter of the biobert

Issue - State: open - Opened by 201720502wrl almost 2 years ago

#38 - train_dev.tsv in datasets

Issue - State: open - Opened by jinniulema almost 2 years ago - 1 comment

#37 - Hellow,auther. The Web link of "download dataset" is out of data. Could you updata it? Thanks!

Issue - State: open - Opened by MrLiuCC almost 2 years ago - 2 comments

#36 - Generating Embeddings for Unknown Text

Issue - State: open - Opened by shivin9 about 2 years ago

#35 - The "convert squad examples" is stuck on new data

Issue - State: open - Opened by ghost about 2 years ago

#34 - The dataset download doesnt work anymore

Issue - State: open - Opened by ghost about 2 years ago - 1 comment

#33 - How to get embedding without deleting duplicates？

Issue - State: open - Opened by WangyuchenCS over 2 years ago - 3 comments

#32 - Base models work, but large model doesn't detect any entity

Issue - State: open - Opened by rafsanahmed over 2 years ago

#31 - Running NER

Issue - State: closed - Opened by SatanuG over 2 years ago - 4 comments

#30 - Performing RE on new text

Issue - State: open - Opened by ChrisPaneque almost 3 years ago - 6 comments

#29 - How to run chemprot relation classification?

Issue - State: open - Opened by arunpatala almost 3 years ago - 2 comments

#28 - UnboundLocalError: local variable 'initialized_variable_names' referenced before assignment in run_ner.py

Issue - State: open - Opened by gvalchca almost 3 years ago

#27 - Running Gene-Gene Relation Extraction task [Please I need help urgently!!!!]

Issue - State: closed - Opened by clemEssien almost 3 years ago

#26 - The model cannot be loaded offline.And I found the problem and gave the solution.

Issue - State: open - Opened by aa429879269 about 3 years ago

#25 - BC2GM NER result

Issue - State: open - Opened by FreeRotate about 3 years ago - 1 comment

#24 - dmis-lab/biobert-base-cased-v1.1 Tokenizer lower cases the input

Issue - State: open - Opened by suamin about 3 years ago

#23 - Help !

Issue - State: open - Opened by HuangDaohong about 3 years ago

#22 - updated for pytorch; multicharacter labels

Pull Request - State: open - Opened by cbizon about 3 years ago

#21 - Maintain input file order in embedding output

Pull Request - State: closed - Opened by ben-heil over 3 years ago

#20 - update to transformers==4.8.1

Pull Request - State: open - Opened by flowpoint over 3 years ago

#19 - Running BioBERT on superGLUE tasks?

Issue - State: closed - Opened by shi-kejian almost 4 years ago - 1 comment

#18 - Is there any plan to add processor for QA of type list?

Issue - State: closed - Opened by ibrahimishag almost 4 years ago

#17 - How can I use BioBERT for Relation extraction and further finding the effective entities in a sentence?

Issue - State: open - Opened by Meghna-Goyal almost 4 years ago - 3 comments

#16 - fix NER preprocessing

Pull Request - State: closed - Opened by dobby-seo almost 4 years ago

#15 - NER results

Issue - State: closed - Opened by ibrahimishag almost 4 years ago - 1 comment

#14 - can't run QA with albert

Issue - State: open - Opened by abdallah197 almost 4 years ago

#13 - Error when running evaluation on BioASQ 4-6b datasets

Issue - State: open - Opened by abdallah197 almost 4 years ago

#12 - Fix wrong answer filename while evaluating RE

Pull Request - State: open - Opened by ting830812 almost 4 years ago

#11 - GlueDataset & GlueDataTrainingArguments - working on Colab

Issue - State: open - Opened by LedaguenelArthur about 4 years ago - 4 comments

#10 - Converting BioBERT version link

Issue - State: closed - Opened by JeffT13 about 4 years ago - 1 comment

#9 - Update run_ner.py

Pull Request - State: closed - Opened by abhibisht89 about 4 years ago - 1 comment

#8 - Update run_re.py

Pull Request - State: closed - Opened by dengchuanbio about 4 years ago - 1 comment

GitHub / dmis-lab/biobert-pytorch issues and pull requests