dlce-eva/python-nexus issues and pull requests

#43 - first stab at v3

Pull Request - State: closed - Opened by xrotwang almost 2 years ago - 20 comments

#42 - refactor combine_nexuses

Issue - State: closed - Opened by SimonGreenhill almost 2 years ago - 6 comments

#41 - taxahandler now parses labels with spaces

Pull Request - State: closed - Opened by SimonGreenhill about 2 years ago

#40 - add trees.ntaxa

Pull Request - State: closed - Opened by SimonGreenhill about 2 years ago - 1 comment

#39 - Fix another bug in detranslate

Pull Request - State: closed - Opened by SimonGreenhill over 2 years ago - 1 comment

#38 - fix minor bug in detranslate

Pull Request - State: closed - Opened by SimonGreenhill over 2 years ago - 5 comments

#37 - Basically PR 35 - but more robust preamble detection

Pull Request - State: closed - Opened by xrotwang over 2 years ago - 2 comments

#36 - Loading of Nexus files fails at attempting to decode `utf-8` data

Issue - State: closed - Opened by codedump over 2 years ago - 5 comments

#35 - only replace taxa labels in newick string

Pull Request - State: closed - Opened by SimonGreenhill over 2 years ago - 3 comments

#34 - added option preserve_order

Pull Request - State: closed - Opened by Bibiko over 2 years ago - 5 comments

#33 - handle nexus files with empty characters block (e.g. edictor)

Pull Request - State: closed - Opened by SimonGreenhill over 2 years ago - 1 comment

#32 - detrans2

Pull Request - State: closed - Opened by SimonGreenhill over 2 years ago - 1 comment

#31 - Make parsing of translate tables in tree blocks more robust

Pull Request - State: closed - Opened by SimonGreenhill almost 3 years ago - 5 comments

#30 - add burnin functionality

Pull Request - State: closed - Opened by SimonGreenhill almost 3 years ago - 6 comments

#29 - add better labels

Pull Request - State: closed - Opened by SimonGreenhill almost 3 years ago

#28 - add fix for trailing comma in character labels

Pull Request - State: closed - Opened by SimonGreenhill almost 3 years ago - 1 comment

#27 - Magic shortcut behaviour more consistent

Pull Request - State: closed - Opened by xrotwang almost 3 years ago - 1 comment

#26 - Round tripping a nexus with a characters block leads to two character blocks

Issue - State: closed - Opened by SimonGreenhill almost 3 years ago - 4 comments

#25 - #NEXUS should be on first line

Issue - State: closed - Opened by xrotwang about 3 years ago - 1 comment
Labels: enhancement

#24 - nexus trees -n should accept a random seed option

Issue - State: closed - Opened by xrotwang about 3 years ago - 3 comments

#23 - Distances

Issue - State: closed - Opened by advanced373 over 3 years ago - 2 comments

#22 - add support for wrapped data blocks

Pull Request - State: closed - Opened by xrotwang almost 4 years ago - 5 comments

#21 - Support for non-interleaved Nexus format?

Issue - State: closed - Opened by mvences almost 4 years ago - 6 comments

#20 - Remove redundant -q option

Pull Request - State: closed - Opened by xrotwang over 4 years ago - 4 comments

#19 - loglevel.WARN not handled in `trees` subcommand?

Issue - State: closed - Opened by SimonGreenhill over 4 years ago - 5 comments

#18 - remove kw from write_to_file

Pull Request - State: closed - Opened by SimonGreenhill over 4 years ago - 1 comment

#17 - Support reading nexus from stdin where appropriate

Issue - State: closed - Opened by xrotwang almost 5 years ago - 2 comments

#16 - Enhanced tree handling

Issue - State: closed - Opened by xrotwang almost 5 years ago

#15 - V2

Pull Request - State: closed - Opened by xrotwang almost 5 years ago - 7 comments

#14 - Breaking changes

Issue - State: closed - Opened by xrotwang almost 5 years ago - 2 comments

#13 - Refactor for 2.0

Issue - State: closed - Opened by xrotwang almost 5 years ago - 18 comments

#12 - django.core.context_processors depreceated?

Issue - State: closed - Opened by SamPassmore almost 5 years ago - 2 comments

#11 - Add `nexus.bin` to list of packages

Pull Request - State: closed - Opened by xrotwang about 6 years ago - 7 comments

#10 - ImportError: cannot import name bin

Issue - State: closed - Opened by wenheping about 6 years ago - 5 comments

#9 - Initial Update

Issue - State: closed - Opened by pyup-bot over 7 years ago

#8 - Fixing RE

Pull Request - State: closed - Opened by tresoldi almost 8 years ago - 2 comments

#7 - Parsing trees?

Issue - State: closed - Opened by tresoldi almost 8 years ago - 1 comment

#6 - Fixed RE allowing for comments (as in Mesquite export)

Pull Request - State: closed - Opened by tresoldi almost 8 years ago

#5 - Refactor DataHandler

Issue - State: closed - Opened by SimonGreenhill about 8 years ago - 1 comment

#4 - DataHandler.write() adds ? to symbols

Issue - State: closed - Opened by SimonGreenhill over 8 years ago

#3 - DataHandler.write() loses character labels.

Issue - State: closed - Opened by SimonGreenhill over 8 years ago

#2 - NexusReader.write() output is not consistent

Issue - State: closed - Opened by SimonGreenhill over 8 years ago

#1 - UnboundLocalError: local variable 'found_ntaxa' referenced before assignment

Issue - State: closed - Opened by xrotwang almost 9 years ago - 3 comments

GitHub / dlce-eva/python-nexus issues and pull requests