dizak/prwlr issues and pull requests

#150 - The prwlr doesn't provide gene names of the orthologous genes imported from KEGG database.

Issue - State: open - Opened by ghost over 3 years ago

#149 - Change fix missing letter

Pull Request - State: closed - Opened by dizak almost 4 years ago

#148 - Docs typo

Issue - State: closed - Opened by dizak almost 4 years ago
Labels: bug

#147 - v0.0.4

Pull Request - State: closed - Opened by dizak almost 4 years ago
Labels: version

#146 - v0.0.4

Issue - State: closed - Opened by dizak almost 4 years ago
Labels: version

#145 - Fix typo

Pull Request - State: closed - Opened by dizak almost 4 years ago

#144 - Fix type on the project page

Issue - State: closed - Opened by dizak almost 4 years ago
Labels: bug

#143 - Add short info about sorting profile.query attr

Pull Request - State: closed - Opened by dizak almost 4 years ago

#142 - Indicate clearly profiles query is sorted

Issue - State: closed - Opened by dizak almost 4 years ago
Labels: update

#141 - 140 orfs subset

Pull Request - State: closed - Opened by dizak almost 4 years ago

#140 - Allow ORFs subset in prwlr.databases.parse_organism_info

Issue - State: closed - Opened by dizak almost 4 years ago
Labels: enhancement

#139 - 136 args passing

Pull Request - State: closed - Opened by dizak almost 4 years ago
Labels: update

#138 - Still there is a problem with documentation

Issue - State: open - Opened by ghost almost 4 years ago

#137 - E-mail notification for [email protected]

Issue - State: open - Opened by ghost almost 4 years ago

#136 - Args passing on convenience functions

Issue - State: closed - Opened by dizak almost 4 years ago
Labels: update

#135 - Remove email notifications in general

Pull Request - State: closed - Opened by dizak almost 4 years ago
Labels: update

#134 - Remove email notifications of travis builds

Issue - State: closed - Opened by dizak almost 4 years ago - 1 comment
Labels: update

#133 - There is a problem with documentation. It is just wrong!

Issue - State: open - Opened by ghost almost 4 years ago

#132 - Closes #129

Pull Request - State: closed - Opened by dizak almost 5 years ago

#131 - Low code quality

Issue - State: open - Opened by dizak almost 5 years ago - 1 comment
Labels: update

#130 - Allow error supresion when building profiles

Pull Request - State: closed - Opened by dizak almost 5 years ago

#129 - No multithreading no effect in get_KOs_db_X_ref

Issue - State: closed - Opened by dizak almost 5 years ago
Labels: bug

#128 - Add convenience function for profiles shuffle

Issue - State: open - Opened by dizak almost 5 years ago - 2 comments
Labels: enhancement

#127 - Upd#123

Pull Request - State: closed - Opened by dizak about 5 years ago

#126 - Allow error supression

Issue - State: closed - Opened by dizak about 5 years ago - 1 comment
Labels: update

#123 - Drop or do not drop duplicates in profiling functions

Issue - State: closed - Opened by dizak over 5 years ago
Labels: update

#122 - Upd#119

Pull Request - State: closed - Opened by dizak over 5 years ago

#121 - Upd#120

Pull Request - State: closed - Opened by dizak over 5 years ago

#120 - Detailed option for dropping duplicates ```prwlr.apis.get_org_db_X_ref```

Issue - State: closed - Opened by dizak over 5 years ago
Labels: update

#119 - Pass urls directly to pandas

Issue - State: closed - Opened by dizak over 5 years ago
Labels: update

#118 - BUG#117

Pull Request - State: closed - Opened by dizak over 5 years ago
Labels: bug, version

#117 - version unchanged

Issue - State: closed - Opened by dizak over 5 years ago
Labels: bug, version

#116 - v0.0.3

Pull Request - State: closed - Opened by dizak over 5 years ago
Labels: version

#115 - v0.0.3

Issue - State: closed - Opened by dizak over 5 years ago
Labels: version

#114 - Bug#113

Pull Request - State: closed - Opened by dizak over 5 years ago

#113 - pandas v0.24

Issue - State: closed - Opened by dizak over 5 years ago
Labels: bug

#112 - v0.0.2

Pull Request - State: closed - Opened by dizak over 5 years ago
Labels: version

#111 - v0.0.2

Issue - State: closed - Opened by dizak over 5 years ago
Labels: version

#110 - UPD#102

Pull Request - State: closed - Opened by dizak over 5 years ago
Labels: update

#109 - Create CHANGELOG.md

Issue - State: closed - Opened by dizak over 5 years ago - 1 comment
Labels: update

#108 - Import gc with underscore

Pull Request - State: closed - Opened by dizak almost 6 years ago

#107 - Removed accidental hard-coding

Pull Request - State: closed - Opened by dizak almost 6 years ago

#106 - Explicit New Style Inheritance Model. Python2 compatibility.

Pull Request - State: closed - Opened by dizak almost 6 years ago

#105 - 'Public' import in prwlr.core

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: bug

#104 - Bug#101

Pull Request - State: closed - Opened by dizak almost 6 years ago

#103 - object inheritance

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: bug

#102 - Create CONTRIBUTING.md

Issue - State: open - Opened by dizak almost 6 years ago - 1 comment
Labels: update

#101 - Cleanup

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: bug

#100 - Enh#88

Pull Request - State: closed - Opened by dizak almost 6 years ago

#99 - Enh#98

Pull Request - State: closed - Opened by dizak almost 6 years ago

#98 - Move the code specific from ```setUp```

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: enhancement

#97 - Amend doc

Issue - State: open - Opened by dizak almost 6 years ago
Labels: update

#96 - Bug#95

Pull Request - State: closed - Opened by dizak almost 6 years ago

#95 - Build fails except for python=3.4

Issue - State: closed - Opened by dizak almost 6 years ago - 2 comments
Labels: bug

#94 - Enh#86

Pull Request - State: closed - Opened by dizak almost 6 years ago

#93 - Bug#92

Pull Request - State: closed - Opened by dizak almost 6 years ago

#92 - Conditional network-based tests skipping

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: bug

#91 - Accidental suffix hard-coding

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: bug

#90 - BUG#82

Pull Request - State: closed - Opened by dizak almost 6 years ago

#89 - BUG#82

Pull Request - State: closed - Opened by dizak almost 6 years ago - 1 comment

#88 - prwlr.save_network

Issue - State: closed - Opened by dizak almost 6 years ago
Labels: enhancement

#87 - Enh#85

Pull Request - State: closed - Opened by dizak almost 6 years ago

#86 - prwlr.read_network

Issue - State: closed - Opened by dizak almost 6 years ago

#85 - prwlr.read_profiles

Issue - State: closed - Opened by dizak about 6 years ago
Labels: enhancement

#84 - Reading/saving iterable as string

Issue - State: closed - Opened by dizak about 6 years ago - 1 comment
Labels: enhancement

#83 - Added pepy downloads counter badge

Pull Request - State: closed - Opened by dizak about 6 years ago

#82 - Double testing

Issue - State: closed - Opened by dizak about 6 years ago
Labels: bug

#81 - setup.py with scripts

Issue - State: open - Opened by dizak about 6 years ago
Labels: update

#80 - Repo structure

Issue - State: open - Opened by dizak about 6 years ago
Labels: update

#79 - pepy badge

Issue - State: closed - Opened by dizak about 6 years ago
Labels: update

#78 - v0.0.1

Pull Request - State: closed - Opened by dizak about 6 years ago

#77 - v0.0.1

Issue - State: closed - Opened by dizak about 6 years ago
Labels: update

#76 - Enh#12

Pull Request - State: closed - Opened by dizak about 6 years ago

#75 - Upd#63

Pull Request - State: closed - Opened by dizak about 6 years ago

#74 - Upd#48

Pull Request - State: closed - Opened by dizak about 6 years ago

#73 - Fix#66

Pull Request - State: closed - Opened by dizak about 6 years ago

#72 - Vectorized calculate_pss pairwise

Pull Request - State: closed - Opened by dizak about 6 years ago

#71 - Bug#70

Pull Request - State: closed - Opened by dizak about 6 years ago

#70 - profiles.Profile comparison

Issue - State: closed - Opened by dizak about 6 years ago
Labels: bug

#69 - vectorized calculate_pss

Issue - State: closed - Opened by dizak over 6 years ago - 1 comment
Labels: update

#68 - KEGG modules X-ref

Issue - State: open - Opened by dizak over 6 years ago
Labels: enhancement

#67 - Project rename#48

Pull Request - State: closed - Opened by dizak over 6 years ago

#66 - Remove or merge duplicated profiles

Issue - State: closed - Opened by dizak over 6 years ago
Labels: bug, update

#65 - Upd#64

Pull Request - State: closed - Opened by dizak over 6 years ago

#64 - project's page update

Issue - State: closed - Opened by dizak over 6 years ago - 1 comment
Labels: update

#63 - minimalistic conda venv files

Issue - State: closed - Opened by dizak over 6 years ago
Labels: update

#62 - Enh#58

Pull Request - State: closed - Opened by dizak over 6 years ago

#61 - FIX#60

Pull Request - State: closed - Opened by dizak over 6 years ago

#60 - apis.get_KOs_db_X_ref KeyError

Issue - State: closed - Opened by dizak over 6 years ago
Labels: bug

#59 - Update#8

Pull Request - State: closed - Opened by dizak over 6 years ago

#58 - Highest level functions in init.py

Issue - State: closed - Opened by dizak over 6 years ago
Labels: enhancement

#57 - Bug#56

Pull Request - State: closed - Opened by dizak over 6 years ago

#54 - Make the network dataframes as small as possible

Issue - State: closed - Opened by dizak over 6 years ago - 1 comment

#51 - calculate_enrichment bad attrib

Issue - State: open - Opened by dizak over 6 years ago - 3 comments
Labels: bug

#50 - permute_profiles full output option

Issue - State: closed - Opened by dizak over 6 years ago - 1 comment
Labels: enhancement

#49 - permute_profiles has no opt for PSS

Issue - State: closed - Opened by dizak over 6 years ago - 1 comment
Labels: bug

#48 - Project rename

Issue - State: closed - Opened by dizak over 6 years ago - 3 comments
Labels: bug, update, API change

#15 - wiki documentation

Issue - State: open - Opened by dizak over 6 years ago - 1 comment
Labels: enhancement

#12 - pip package

Issue - State: closed - Opened by dizak over 6 years ago - 1 comment
Labels: enhancement

#8 - Amend KEGG database parser

Issue - State: closed - Opened by dizak over 6 years ago - 2 comments
Labels: update

GitHub / dizak/prwlr issues and pull requests