diyabc/abcranger issues and pull requests

#102 - Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows

Pull Request - State: open - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#101 - Fix the CI for pyabcranger and python 3.12

Issue - State: closed - Opened by fradav 7 months ago
Labels: ci

#100 - Installation broken on MacOS M3

Issue - State: closed - Opened by janfb 8 months ago - 2 comments

#99 - comad line exception

Issue - State: closed - Opened by vincenzolandi 9 months ago - 1 comment

#98 - Incoherent model choice results with abcranger

Issue - State: closed - Opened by elombaert 9 months ago - 1 comment
Labels: estim-param

#97 - abcrangers treatment (parameter estimation) does not work when using statobsRF.txt produced with the beta version diyabc-RF-windows-v1.1.36.exe

Issue - State: closed - Opened by aestoup 9 months ago - 1 comment
Labels: bug

#96 - Python installation broken 3.11

Issue - State: closed - Opened by pbastide 10 months ago - 2 comments

#95 - Add the --load option for loading forests from files (like ranger does)

Issue - State: open - Opened by fradav about 1 year ago
Labels: enhancement

#94 - Issue with parameter estimation when more than 1 scenario present?

Issue - State: closed - Opened by mariaemilyd about 2 years ago - 11 comments
Labels: bug, estim-param

#93 - python installation for pyabcranger 0.0.53 broken

Issue - State: closed - Opened by psteinb over 2 years ago - 3 comments
Labels: ci, Python

#92 - Installation broken with python 3.10.4

Issue - State: closed - Opened by psteinb over 2 years ago - 4 comments
Labels: ci, Python

#91 - Workflows are referencing vulnerable actions

Issue - State: closed - Opened by igibek almost 3 years ago - 1 comment
Labels: ci

#90 - Symbol not found in abcranger MacOS version

Issue - State: closed - Opened by gdurif almost 3 years ago - 1 comment

#89 - output indirection (no terminal) not detected correctly on windows

Issue - State: closed - Opened by fradav over 3 years ago - 1 comment
Labels: bug, standalone

#88 - Segmentation fault (core dumped) abcranger-linux-v1.2.60

Issue - State: closed - Opened by phrh over 3 years ago - 6 comments
Labels: doc

#87 - file output of explained variances retains only one

Issue - State: closed - Opened by fradav over 3 years ago - 1 comment
Labels: bug, estim-param

#86 - gettext build failure in CI for macos

Issue - State: closed - Opened by fradav over 3 years ago - 1 comment
Labels: ci, mac, build

#85 - Issue with new eigen3 vcpkg install

Issue - State: closed - Opened by fradav over 3 years ago - 3 comments
Labels: workaround needed, build

#84 - filter unused posteriors and globals when noob = 0 in oobstats output

Issue - State: closed - Opened by fradav over 3 years ago - 1 comment
Labels: bug, estim-param

#83 - Rewrite OOB description in *.confusion file

Issue - State: closed - Opened by fradav over 3 years ago - 1 comment
Labels: enhancement, model-choice

#82 - Identify group setting ('-g/--groups') in modelchoice_out.setting

Issue - State: closed - Opened by gdurif over 3 years ago - 1 comment
Labels: enhancement, model-choice

#81 - [model choice] add a column identifying simulation scenario in modelchoice_out.lda

Issue - State: closed - Opened by gdurif almost 4 years ago - 3 comments
Labels: enhancement, model-choice, standalone

#80 - How to get posterior probabilities of each scenario using abcranger?

Issue - State: closed - Opened by xiekunwhy almost 4 years ago - 1 comment
Labels: question, model-choice

#79 - Estimate results were overlapped.

Issue - State: closed - Opened by xiekunwhy almost 4 years ago - 1 comment
Labels: estim-param, standalone

#78 - python 3.9 wheels

Issue - State: closed - Opened by fradav almost 4 years ago - 1 comment
Labels: enhancement, Python

#77 - Bug in statobs reading

Issue - State: closed - Opened by fradav almost 4 years ago - 1 comment
Labels: bug, standalone

#76 - Add checksum to releases

Issue - State: open - Opened by fradav almost 4 years ago
Labels: ci

#75 - PLS should ignore constant features

Issue - State: closed - Opened by fradav almost 4 years ago - 1 comment
Labels: bug, estim-param

#74 - Implement multi-target for parameter estimation and model choice

Issue - State: closed - Opened by fradav almost 4 years ago - 2 comments
Labels: enhancement, model-choice, estim-param

#73 - Formating issue in modelchoice_out.lda

Issue - State: closed - Opened by gdurif about 4 years ago - 3 comments
Labels: enhancement, model-choice

#72 - Bug in argument -g (groups) parsing

Issue - State: closed - Opened by fradav about 4 years ago
Labels: bug, model-choice, standalone

#71 - python 3.8 mac version of the wheel

Issue - State: closed - Opened by fradav about 4 years ago - 1 comment
Labels: mac, build, Python

#70 - Dossier qui bug sous windows pour abcranger_AE_pour_review_MER.exe (de meme que precedents execurables windows)

Issue - State: closed - Opened by aestoup about 4 years ago - 2 comments
Labels: bug

#69 - Error installing with pip: ` ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.`

Issue - State: closed - Opened by jstmn about 4 years ago - 9 comments
Labels: mac, build, Python

#68 - Pip install error on Macbook: 'ModuleNotFoundError: No module named 'cmaketools'

Issue - State: closed - Opened by jstmn about 4 years ago - 1 comment

#67 - output request for MER review

Issue - State: closed - Opened by fradav about 4 years ago - 1 comment
Labels: enhancement

#66 - Crash in modelchoice second forest growing with a relatively low number of stats.

Issue - State: closed - Opened by fradav about 4 years ago - 1 comment
Labels: bug, model-choice

#65 - No output/stalling in non-interactive python mode

Issue - State: closed - Opened by fradav about 4 years ago - 2 comments
Labels: bug, Python

#64 - windows standalone missing dll

Issue - State: closed - Opened by fradav about 4 years ago - 2 comments
Labels: build

#63 - Allow to estimate mutliple parameters

Issue - State: closed - Opened by gdurif about 4 years ago - 1 comment

#62 - Identify multiple analyses in same directory

Issue - State: closed - Opened by gdurif about 4 years ago - 1 comment

#61 - oob error computation by number of trees is wrong

Issue - State: closed - Opened by fradav over 4 years ago - 3 comments
Labels: bug

#60 - Estimation de parametres: variable nbre de data du training set a affiner

Issue - State: closed - Opened by aestoup over 4 years ago - 2 comments
Labels: bug

#59 - Numerical Output to do the equivalent of FIGURE 2 of the MER ms.

Issue - State: closed - Opened by aestoup over 4 years ago - 3 comments
Labels: enhancement

#58 - Output progress for forest growing for shiny

Issue - State: closed - Opened by fradav over 4 years ago - 1 comment
Labels: enhancement

#57 - Rare crash in python when "quiet" is disabled

Issue - State: closed - Opened by fradav over 4 years ago - 1 comment
Labels: bug

#56 - Model choice: analyser un sous ensemble des scenarios dans le reftableRF.bin

Issue - State: closed - Opened by aestoup over 4 years ago - 2 comments
Labels: enhancement

#55 - Generate file summarising the run parameters

Issue - State: closed - Opened by gdurif over 4 years ago - 1 comment
Labels: enhancement

#54 - Crash in estimparam

Issue - State: closed - Opened by fradav over 4 years ago - 1 comment
Labels: bug, estim-param

#53 - Parameter estimation not possible for microsatellites and sequences

Issue - State: closed - Opened by elombaert over 4 years ago - 9 comments
Labels: bug, estim-param

#52 - Running binary in an empty directory gives a 'core dump'

Issue - State: closed - Opened by gdurif over 4 years ago - 1 comment
Labels: bug, good first issue

#51 - remove constant features for LDA to work and from outputs

Issue - State: closed - Opened by fradav over 4 years ago - 10 comments
Labels: enhancement, model-choice

#50 - Invalid parameter estimation with microsat header

Issue - State: closed - Opened by fradav over 4 years ago - 6 comments
Labels: invalid, estim-param

#49 - Pruning of the reftable struct

Issue - State: open - Opened by fradav over 4 years ago
Labels: enhancement

#48 - PyPI packaging

Issue - State: closed - Opened by fradav over 4 years ago - 19 comments
Labels: Python

#47 - Python doc

Issue - State: open - Opened by fradav over 4 years ago
Labels: doc, Python

#46 - Better option handling for python interface

Issue - State: open - Opened by fradav over 4 years ago
Labels: enhancement, Python

#45 - New outputs/formating for estimparam

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: enhancement, estim-param

#44 - Check PLS (elbow) heuristic

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: invalid, estim-param

#43 - Integrate pybind11 in cmake

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: enhancement

#42 - Move Dense Eigen matrices to Map<>

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: enhancement

#41 - Parallelize oob weights computations + forest quantiles

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: enhancement, estim-param

#40 - Discrepancies with abcrf computed global values in parameter estimation

Issue - State: closed - Opened by fradav almost 5 years ago
Labels: invalid, estim-param

#39 - Document composite parameter in PE

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: estim-param, doc

#38 - Group of models

Issue - State: closed - Opened by fradav almost 5 years ago - 1 comment
Labels: enhancement, model-choice

#37 - Ranges v3 update

Issue - State: closed - Opened by fradav about 5 years ago - 1 comment
Labels: build

#36 - vcpkg and Clang/libc++ woes

Issue - State: closed - Opened by fradav about 5 years ago
Labels: build

#35 - Run sanitize (detecting memory leaks or overflows)

Issue - State: closed - Opened by fradav about 5 years ago - 1 comment
Labels: enhancement

#34 - Modelchoice segfault with mac

Issue - State: closed - Opened by fradav over 5 years ago - 2 comments
Labels: bug, model-choice, mac

#33 - Progress bars

Issue - State: closed - Opened by fradav over 5 years ago
Labels: enhancement

#32 - Heavily threaded (> 100) ranger workload deadlock

Issue - State: closed - Opened by fradav over 5 years ago - 1 comment
Labels: bug

#31 - Possible (slight) bias in OOB test prediction

Issue - State: closed - Opened by fradav over 5 years ago - 1 comment
Labels: invalid, question, estim-param

#30 - PLS : remove svd

Issue - State: closed - Opened by fradav over 5 years ago - 1 comment
Labels: enhancement, estim-param

#29 - local mae for estimparam

Issue - State: closed - Opened by fradav over 5 years ago - 1 comment
Labels: enhancement, estim-param

#28 - Slight bias in model choice post proba

Issue - State: closed - Opened by fradav over 5 years ago - 7 comments
Labels: enhancement, invalid, model-choice

#27 - Sequential reftable read function for a chosen scenario

Issue - State: closed - Opened by fradav over 5 years ago - 1 comment
Labels: enhancement

#26 - PLS optimisations

Issue - State: closed - Opened by fradav over 5 years ago - 2 comments
Labels: enhancement, estim-param

#25 - Test on "big datasets" and "heavy RF configurations": PLS selection, memory occupancy, running time and global results

Issue - State: closed - Opened by aestoup over 5 years ago - 13 comments
Labels: question, estim-param

GitHub / diyabc/abcranger issues and pull requests