Ecosyste.ms: Issues

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GitHub / divelab/DIG issues and pull requests

#253 - error while implementing Subgraphx

Issue - State: open - Opened by xristos19353 20 days ago

#251 - Issues on SubgraphX implementation on DIG

Issue - State: open - Opened by Stika4life about 2 months ago

#250 - Maybe ComENet is not structure invariant?

Issue - State: open - Opened by StefanIsSmart 4 months ago - 1 comment

#248 - Update aug_dataset.py

Pull Request - State: closed - Opened by simon-forb 4 months ago

#247 - ProNet scripts

Issue - State: open - Opened by zpengmei 4 months ago - 1 comment

#246 - Unable to install DIG on windows due to pyscf

Issue - State: open - Opened by LIAOJUNJIE-OBJ 5 months ago

#245 - expired url

Issue - State: open - Opened by surqing 7 months ago

#244 - Update dimenetpp.py

Pull Request - State: open - Opened by shrimonmuke0202 7 months ago

#241 - Update aug_dataset.py

Pull Request - State: open - Opened by simon-forb 8 months ago

#239 - Fix Graphair bug

Pull Request - State: closed - Opened by hongyiling 10 months ago

#238 - Reconstruction loss hyperparameter

Issue - State: closed - Opened by nordinbelkacemi 10 months ago - 1 comment

#237 - Update Graphair

Pull Request - State: closed - Opened by hongyiling 10 months ago

#236 - Code

Issue - State: open - Opened by 11140321 11 months ago - 3 comments
Labels: 3dgraph

#235 - Uploading my own dataset

Issue - State: open - Opened by idililayda 11 months ago

#234 - Adding a new node feature to a Spherenet model

Issue - State: closed - Opened by LeonardoBarneschi 11 months ago - 2 comments
Labels: 3dgraph

#233 - Questions about the ComENet

Issue - State: closed - Opened by StefanIsSmart 11 months ago - 5 comments
Labels: 3dgraph

#232 - Question about spherenet

Issue - State: closed - Opened by StefanIsSmart 11 months ago - 1 comment
Labels: 3dgraph

#231 - xgraph

Issue - State: open - Opened by DaliMIT01 12 months ago

#228 - Typo fix

Pull Request - State: closed - Opened by r-kellerm about 1 year ago

#227 - Codes and scripts for ProNet

Issue - State: closed - Opened by twopin about 1 year ago - 1 comment

#226 - Error on tutorial for graph generation

Issue - State: open - Opened by Takaogahara about 1 year ago - 2 comments

#224 - RuntimeError: CUDA error: invalid device ordinal

Issue - State: closed - Opened by langineer about 1 year ago - 2 comments

#223 - Query about GraphAug

Issue - State: closed - Opened by zheng-awei about 1 year ago - 1 comment

#222 - Minor Fix for G-SphereNet Generation

Pull Request - State: closed - Opened by ameya98 about 1 year ago

#221 - Solution when alpha carbon coordinate is missing

Issue - State: closed - Opened by YanjingLiLi over 1 year ago - 1 comment

#220 - .

Issue - State: closed - Opened by SSU02 over 1 year ago

#219 - Documentation Discrepancy: Incompatibility of DIG with PyTorch Geometric 2.3.0

Issue - State: open - Opened by Qianli-Wu over 1 year ago - 1 comment
Labels: xgraph

#218 - The reproduction result on MD17 do not match

Issue - State: closed - Opened by xnuohz over 1 year ago - 1 comment

#216 - About ProNet

Issue - State: closed - Opened by DuanhaoranCC over 1 year ago

#215 - Graphair mini-batch version

Issue - State: closed - Opened by ZzoomD over 1 year ago - 1 comment
Labels: fairgraph

#214 - No JSON file in DIG repo.

Issue - State: closed - Opened by RichardShea over 1 year ago - 1 comment
Labels: ggraph

#213 - Update overview fig

Pull Request - State: closed - Opened by hongyiling over 1 year ago

#212 - How do I visualize molecular 3D graphs of a dataset (QM9)?

Issue - State: closed - Opened by DongfangYu-Bruce over 1 year ago - 2 comments

#210 - Add S-Mixup code

Pull Request - State: closed - Opened by hongyiling over 1 year ago

#208 - fairgraph: learning fair graph representation through automated graph data augmentations

Pull Request - State: closed - Opened by hydra324 over 1 year ago - 1 comment

#207 - Training details of GearNet

Issue - State: closed - Opened by YanjingLiLi over 1 year ago - 1 comment

#206 - AttributeError: 'GCNConv' object has no attribute '__check_input__'

Issue - State: open - Opened by FabioDataGeek over 1 year ago - 6 comments

#205 - Type of atoms

Issue - State: closed - Opened by YanjingLiLi over 1 year ago - 6 comments
Labels: 3dgraph

#203 - How to use DIG for multi-label classification tasks?

Issue - State: open - Opened by yuancongxri over 1 year ago

#201 - SphereNet initialize atomic types tensor

Issue - State: closed - Opened by pearl-rabbit over 1 year ago - 1 comment
Labels: 3dgraph

#200 - Synthetic datasets download link expired

Issue - State: open - Opened by XpastaX over 1 year ago

#199 - The returned fidelity is NAN

Issue - State: closed - Opened by TimelessXZY over 1 year ago - 1 comment
Labels: bug

#197 - The results do not match the description in Readme.md

Issue - State: open - Opened by huayangcs over 1 year ago

#196 - ComENet: Confusion around optimal hyper-parameters and training procedure on Molecule3D

Issue - State: closed - Opened by fmocking over 1 year ago - 6 comments
Labels: 3dgraph

#195 - SphereNet HP tuning

Issue - State: closed - Opened by LeonardoBarneschi over 1 year ago - 1 comment
Labels: 3dgraph

#194 - Errors in dimensions

Issue - State: closed - Opened by Breaddsmall over 1 year ago - 4 comments
Labels: 3dgraph

#192 - Specified module cannot be found when importing DIG

Issue - State: closed - Opened by kwongkr over 1 year ago - 1 comment

#191 - where is ocpmodels in dig/threedgraph/method/comenet/ocp/comenet-ocp.py

Issue - State: closed - Opened by cuitaoyong over 1 year ago - 1 comment
Labels: 3dgraph

#190 - Update ComENet OCP folder

Pull Request - State: closed - Opened by MontgomeryBohde over 1 year ago

#189 - typo in xyz_to_dat docstring

Pull Request - State: closed - Opened by KirillShmilovich over 1 year ago

#188 - Fix some bugs of accessing items in dictionaries.

Pull Request - State: closed - Opened by Michael1015198808 over 1 year ago - 3 comments

#187 - Fix bugs in `Tutorial for GNN Explainability`

Pull Request - State: closed - Opened by Michael1015198808 over 1 year ago

#186 - ModuleNotFoundError: No module named 'torch_geometric.nn.acts'

Issue - State: closed - Opened by vict0rsch almost 2 years ago - 6 comments

#185 - Graph augmentation

Pull Request - State: closed - Opened by anmol-anand almost 2 years ago - 7 comments

#184 - the methods in xgraph can only explain model in dig.xgraph.models

Issue - State: open - Opened by Oliver-0423 almost 2 years ago - 4 comments
Labels: xgraph

#183 - about the code in 'xyz_to_dat' function

Issue - State: closed - Opened by jiaminglei-lei almost 2 years ago - 2 comments
Labels: 3dgraph

#182 - Unsupervised Learning (MVRGL)

Issue - State: open - Opened by MarkSttc almost 2 years ago - 1 comment
Labels: sslgraph

#181 - Unable to install DIG in Colab environment

Issue - State: open - Opened by chriswu99aaa almost 2 years ago - 1 comment

#180 - Generate graphs for non-chemical domains

Issue - State: closed - Opened by AresEkb almost 2 years ago - 2 comments

#179 - No module named 'torch_geometric.nn.acts'

Issue - State: closed - Opened by pearl-rabbit almost 2 years ago - 4 comments

#178 - GraphCL graph-level task with GIN and GCN

Issue - State: closed - Opened by davidfstein almost 2 years ago - 2 comments
Labels: sslgraph

#177 - Error in sslgraph

Issue - State: closed - Opened by shirinmous almost 2 years ago - 1 comment
Labels: bug, sslgraph

#176 - Training is slow and not using GPU

Issue - State: open - Opened by davidfstein almost 2 years ago - 2 comments
Labels: sslgraph

#175 - Found a naming error.

Issue - State: closed - Opened by SaraiQX almost 2 years ago - 2 comments

#174 - ValueError: too many values to unpack (expected 2)

Issue - State: open - Opened by SaraiQX almost 2 years ago - 2 comments
Labels: sslgraph

#173 - Evaluation script used in Comenet on OC20

Issue - State: closed - Opened by fmocking almost 2 years ago - 1 comment
Labels: 3dgraph

#172 - ComENet: Molecule3D split

Issue - State: closed - Opened by fmocking almost 2 years ago - 2 comments
Labels: 3dgraph

#171 - TypeError: train() missing 3 required positional arguments: 'data_loader', 'optimizer', and 'epochs'

Issue - State: open - Opened by yhliu2022 almost 2 years ago - 1 comment
Labels: xgraph

#170 - Why the MAE of homo with the spherenet model is 0.018?

Issue - State: closed - Opened by qiyinger almost 2 years ago - 1 comment
Labels: 3dgraph

#166 - xgraph/pgexplainer

Issue - State: open - Opened by cxw-droid about 2 years ago - 2 comments
Labels: xgraph

#165 - About torch-geometric version

Issue - State: closed - Opened by orientalCherry841 about 2 years ago - 2 comments

#164 - a leaf Variable that requires grad is being used in an in-place operation

Issue - State: closed - Opened by SickleLeeks about 2 years ago - 2 comments

#163 - Graph classification example for subgraphx

Issue - State: closed - Opened by CTY000622 about 2 years ago - 1 comment

#162 - Feature Addition: GCA View Generation and Objective

Pull Request - State: closed - Opened by sairamanareddy about 2 years ago

#161 - 'data_batch.batch' in SphereNet model， What does this mean and how do you get it?

Issue - State: closed - Opened by flpan about 2 years ago - 2 comments
Labels: 3dgraph

#158 - Windows installation

Issue - State: closed - Opened by akhilesh2295 about 2 years ago - 6 comments

#157 - Patch 1

Pull Request - State: closed - Opened by Mahmood-Kazemi about 2 years ago - 1 comment

#156 - Can't import SphereNet (version error)

Issue - State: closed - Opened by sentinel8b about 2 years ago - 4 comments
Labels: 3dgraph

#155 - Optimal hyper-parameters for ComENet

Issue - State: open - Opened by yueliu1999 about 2 years ago - 4 comments
Labels: 3dgraph

#154 - Cache is not working with SubgraphX and GNNExplainer

Issue - State: closed - Opened by simoons95 about 2 years ago - 1 comment

#153 - AttributeError: 'GCNConv' object has no attribute '__explain__'

Issue - State: closed - Opened by cxw-droid about 2 years ago - 5 comments

#152 - Tutorial for GNN Explainability--Code Example--problems

Issue - State: closed - Opened by gongchenghua about 2 years ago - 1 comment