Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / digitalcytometry/cytospace issues and pull requests
#98 - Running cytospace with multiple slides
Issue -
State: open - Opened by sharonlee7980 5 months ago
- 1 comment
#97 - Cell Fraction estimation for Legacy ST with Smart-seq single-cell
Issue -
State: closed - Opened by sahil-sahni 6 months ago
- 11 comments
#96 - Is there a way to plot a specific celltype alone?
Issue -
State: closed - Opened by NicolaasVanRenne 6 months ago
- 1 comment
#95 - Error running cytoSPACE. glmGamPoi
Issue -
State: closed - Opened by alfonsosaera 7 months ago
- 4 comments
#94 - Integration error
Issue -
State: closed - Opened by Ocean-Lyu 8 months ago
- 3 comments
#93 - Guide post cytoSPACE
Issue -
State: closed - Opened by xiweiwu 8 months ago
- 2 comments
#92 - Any plans on updating working Python version?
Issue -
State: closed - Opened by andrew-weisman 8 months ago
- 2 comments
#91 - can i get the simulated dataset?
Issue -
State: closed - Opened by jennyxxxxxx 9 months ago
- 3 comments
#90 - Have Docker images or singularity images?
Issue -
State: closed - Opened by caiquanyou 9 months ago
- 1 comment
#89 - get_cellfracs_seuratv3 does not work on sparse matrix
Issue -
State: open - Opened by smeiersab 9 months ago
- 6 comments
#88 - ValueError: Cell type TYPE_NA in the ST dataset is not available in the scRNA-seq dataset
Issue -
State: closed - Opened by suerle 9 months ago
- 4 comments
#87 - glmGamPoi Error
Issue -
State: closed - Opened by hannhat1998 9 months ago
- 1 comment
#86 - Add glmGamPoi_1.2.0 to environment.yml
Pull Request -
State: closed - Opened by WubingZhang 10 months ago
#85 - error, but I do not know why
Issue -
State: closed - Opened by Yulintian 10 months ago
- 2 comments
#84 - Update get_cellfracs_seuratv3.R
Pull Request -
State: closed - Opened by WubingZhang 10 months ago
#83 - Working with Stereo-seq data
Issue -
State: closed - Opened by tvegawaichman 11 months ago
- 2 comments
#82 - Some cell types are not inferred
Issue -
State: closed - Opened by fuerzhou 11 months ago
- 4 comments
#81 - scRNA-seq reference
Issue -
State: closed - Opened by ChenJin2020 11 months ago
- 2 comments
#80 - color label for cellTypes
Issue -
State: closed - Opened by abulislam 11 months ago
- 1 comment
#79 - Error: Cannot find more nearest neighbours than there are points
Issue -
State: closed - Opened by kwangdol 11 months ago
- 1 comment
#78 - TypeError: '<' not supported between instances of 'str' and 'int' in plot.py
Issue -
State: closed - Opened by suerle 12 months ago
- 2 comments
#77 - run_cytospace Issue after successful install
Issue -
State: closed - Opened by dmiyagi 12 months ago
- 8 comments
#76 - OSError: Could not find 'spatial/tissue_positions_list.csv'
Issue -
State: closed - Opened by gebdu about 1 year ago
- 1 comment
#75 - comparing different dlides/sections
Issue -
State: closed - Opened by gebdu about 1 year ago
- 1 comment
#74 - possibility of sparse matrix support?
Issue -
State: closed - Opened by mcaponegro about 1 year ago
- 3 comments
#73 - Create releases for each version
Issue -
State: closed - Opened by leej3 about 1 year ago
- 3 comments
#72 - What's the reason of "Killed"?
Issue -
State: closed - Opened by e-tomato about 1 year ago
- 3 comments
#71 - Error during get_cellfracs_seuratv3.R - colSums(predictions.assay) : 'x' must be an array of at least two dimensions
Issue -
State: closed - Opened by ssrin2 about 1 year ago
- 2 comments
#70 - Error arised in plot.py--TypeError: unsupported operand type(s) for -: 'str' and 'str'
Issue -
State: closed - Opened by hiiiyilingzhang over 1 year ago
- 3 comments
#69 - Issues about parameter 'ctfep'
Issue -
State: closed - Opened by wangzlgithub over 1 year ago
- 3 comments
#68 - Error: package or namespace load failed for ‘Seurat’ in dyn.load(file, DLLpath = DLLpath, ...):
Issue -
State: closed - Opened by zt6597 over 1 year ago
- 5 comments
#67 - Running Error
Issue -
State: closed - Opened by DHGK over 1 year ago
- 4 comments
#66 - Segmentation fault error during linear assignment
Issue -
State: closed - Opened by mcaponegro over 1 year ago
- 2 comments
#65 - How to specify a 'genome' parameter?
Issue -
State: closed - Opened by psenin-sanofi over 1 year ago
- 1 comment
#64 - can't install, plz help me
Issue -
State: closed - Opened by wanglin1992 over 1 year ago
- 1 comment
#63 - subprocess.CalledProcessError:
Issue -
State: closed - Opened by trantunhi99 over 1 year ago
#62 - Simulated datasets
Issue -
State: closed - Opened by jincanke over 1 year ago
- 3 comments
#61 - Unexpected Terminated when Solving linear assignment problem
Issue -
State: closed - Opened by QianhuiXu over 1 year ago
- 1 comment
#60 - Denoising before running cytoSPACE
Issue -
State: closed - Opened by rajeha over 1 year ago
- 1 comment
#59 - Purpose of single cell mode
Issue -
State: closed - Opened by reillyeo over 1 year ago
- 1 comment
#58 - TransferData failing with rare reference celltypes
Issue -
State: closed - Opened by briglo over 1 year ago
- 2 comments
#57 - Adding assay parameter to generate_cytospace_from_scRNA_seurat_object
Pull Request -
State: closed - Opened by simoncmo over 1 year ago
- 1 comment
#56 - Quick Gotchas and current solutions
Issue -
State: closed - Opened by simoncmo over 1 year ago
- 4 comments
#55 - -op parameter generate error 'cell_type_assignments_by_spot.csv does not exist'
Issue -
State: closed - Opened by ChangliangWang over 1 year ago
- 2 comments
#54 - cannot open file 'get_cellfracs_seuratv3.R
Issue -
State: closed - Opened by gakabani over 1 year ago
- 5 comments
#53 - Seurat_weights.txt does not exist
Issue -
State: closed - Opened by williamsdrake over 1 year ago
- 2 comments
#52 - Problem when cell_type_labels are numeric
Issue -
State: closed - Opened by MostBeef over 1 year ago
- 4 comments
#51 - Update for revision
Pull Request -
State: closed - Opened by cbsteen almost 2 years ago
#50 - RE: single cell reference
Issue -
State: closed - Opened by vravik almost 2 years ago
- 2 comments
#49 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#48 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#47 - Update README
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#46 - Update generating from Seurat inputs section
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#45 - Update generating Seurat inputs section
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#44 - Updating generate CytoSPACE inputs from Seurat objects
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#43 - small update on ReadMe file
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#42 - Update data preparation files
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#41 - Update input file preparation
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#40 - Update CytoSPACE file preparation
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#39 - Updating plotting parameters
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#38 - update plotting section
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#37 - Update cytospace.py
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#36 - Update post_processing.py
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#35 - Update logging
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#34 - Update output code
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#33 - add a feature to plot non-Visium dimensions
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#32 - update plotting parameters
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#31 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#30 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#29 - add scripts to generate cytospace outputs
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#28 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#27 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#26 - Update argument_parser.py
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#25 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#24 - Update solvers
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#23 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#22 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#21 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#20 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#19 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#18 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#17 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#16 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#15 - Update linear_assignment_solvers.py
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#14 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#13 - Create environment_withlapjv.yml
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#12 - Update get_cellfracs_seuratv3.R
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#11 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#10 - Add gdown instructions
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#9 - Include gdown in environment.yml
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#8 - updating plotting parameters
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#7 - optimizing plotting parameters
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago
#6 - Add arguments to be parsed from commandline
Pull Request -
State: closed - Opened by cbsteen over 2 years ago
#5 - Update README.md
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#4 - Update description
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#3 - Update README with logo
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#2 - Add logo image
Pull Request -
State: closed - Opened by erinlbrown over 2 years ago
#1 - update plotting function and ordering issue
Pull Request -
State: closed - Opened by miladrafiee over 2 years ago