dieterich-lab/FUCHS issues and pull requests

#25 - FUCHS 0.3.0 branch seems not to contain commit #afe7192

Issue - State: closed - Opened by HaraldWilhelmi over 1 year ago - 3 comments

#24 - sys.meta_path is None

Issue - State: open - Opened by jaanckae almost 2 years ago - 3 comments
Labels: bug

#23 - Question: BED annotation input

Issue - State: open - Opened by mumichae almost 3 years ago

#22 - Logic error? The program will miss one read for each junction

Issue - State: open - Opened by Christina-hshi over 3 years ago - 1 comment
Labels: bug

#21 - Fuchs 0.3

Pull Request - State: closed - Opened by tjakobi about 4 years ago

#20 - Negative length exons & systematic coordinate errors

Issue - State: open - Opened by tgermade about 5 years ago - 2 comments
Labels: bug

#19 - where to find the bed6 annotation file

Issue - State: open - Opened by sambhav2mishra about 5 years ago

#18 - Cannot not find numpy when installing

Issue - State: closed - Opened by Rainkikiki over 6 years ago - 3 comments
Labels: bug

#17 - Merging parallel branch with master

Pull Request - State: closed - Opened by tjakobi about 7 years ago

#16 - skip.exon.bed file empty

Issue - State: open - Opened by CYZbasebio over 7 years ago

#15 - strand in "sample.exon_counts.bed" file

Issue - State: open - Opened by qindan2008 over 7 years ago

#14 - how FUCHS circ handle multiple samples at the same time?

Issue - State: closed - Opened by qindan2008 over 7 years ago - 1 comment

#13 - "refseq" and "ensembl" Annotation.bed file format

Issue - State: closed - Opened by qindan2008 over 7 years ago - 1 comment

#12 - some issues with FUCHS

Issue - State: open - Opened by CYZbasebio over 7 years ago - 2 comments

#11 - guided_denovo_circle_structure_parallel - wrong path

Issue - State: closed - Opened by CDieterich over 7 years ago - 2 comments
Labels: bug

#10 - graphical representation is wrong

Issue - State: closed - Opened by FranziMe over 7 years ago
Labels: bug

#9 - bug in mate_status.txt output

Issue - State: closed - Opened by CDieterich over 7 years ago - 2 comments
Labels: bug

#8 - Optional FUCHS modules are not discussed

Issue - State: closed - Opened by CDieterich over 7 years ago
Labels: enhancement

#7 - guided_denovo vs denovo script

Issue - State: closed - Opened by CDieterich over 7 years ago - 6 comments
Labels: bug

#6 - Check for R dependency before program start

Issue - State: closed - Opened by CDieterich over 7 years ago - 2 comments
Labels: enhancement

#5 - Relative path handling

Issue - State: closed - Opened by CDieterich over 7 years ago
Labels: bug

#4 - Directories are not created and program exits

Issue - State: closed - Opened by CDieterich over 7 years ago - 1 comment
Labels: enhancement

#3 - summarized_coverage_profiles.R should make sure all dependencies are installed

Issue - State: closed - Opened by tjakobi almost 8 years ago - 1 comment
Labels: enhancement

#2 - FUCHS is not compatible with bedtools > 2.24.0

Issue - State: closed - Opened by tjakobi almost 8 years ago
Labels: bug

#1 - Problem with BED12 files in IGV

Issue - State: closed - Opened by CDieterich about 8 years ago

Ecosyste.ms: Issues

GitHub / dieterich-lab/FUCHS issues and pull requests