Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / diegozea/MIToS.jl issues and pull requests

#84 - Logos

Issue - State: closed - Opened by diegozea 4 months ago - 4 comments

#83 - Update README.md

Pull Request - State: closed - Opened by diegozea 4 months ago - 1 comment

#82 - update

Pull Request - State: closed - Opened by LouiseB25 4 months ago - 1 comment

#81 - update

Pull Request - State: closed - Opened by LouiseB25 4 months ago

#80 - Adding A3M.jl in src/MSA

Pull Request - State: closed - Opened by LouiseB25 5 months ago

#79 - Some overloads violate function intent

Issue - State: closed - Opened by timholy 5 months ago - 2 comments

#78 - Revert "CI: Do not test Julia 1.0"

Pull Request - State: closed - Opened by timholy 5 months ago - 1 comment

#77 - Goal: unify on BioStructures for PDB reading

Issue - State: open - Opened by timholy 5 months ago - 2 comments

#76 - Adding AlphaFoldDB file

Pull Request - State: closed - Opened by LouiseB25 6 months ago

#75 - Parsing: fix Stockholm for Clustal Omega output

Pull Request - State: closed - Opened by timholy 6 months ago - 4 comments

#74 - Formatting -> Format

Pull Request - State: closed - Opened by timholy 6 months ago - 5 comments

#73 - downloadpfam fails for full alignments

Issue - State: closed - Opened by 3f6a 7 months ago - 3 comments

#72 - CompatHelper: bump compat for NamedArrays to 0.9, (keep existing compat)

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment

#70 - Error reading structures generated with extract_from_pdb

Issue - State: open - Opened by diegozea over 1 year ago

#69 - MSA shown representation

Issue - State: closed - Opened by diegozea over 1 year ago - 1 comment

#67 - New zlib error reading Stockholm files

Issue - State: closed - Opened by kool7d almost 2 years ago - 1 comment

#66 - update HTTP compat to 1

Pull Request - State: closed - Opened by kool7d almost 2 years ago - 2 comments

#65 - PFAM is not always round-trippable?

Issue - State: closed - Opened by timholy almost 2 years ago - 3 comments

#64 - Switch to GitHub Actions, fix constructor

Pull Request - State: closed - Opened by timholy almost 2 years ago - 6 comments

#63 - SIFTS download error

Issue - State: closed - Opened by kool7d over 2 years ago - 1 comment

#62 - `superimpose` chosen residues

Pull Request - State: closed - Opened by timholy almost 3 years ago - 3 comments

#61 - TagBot trigger issue

Issue - State: closed - Opened by JuliaTagBot over 3 years ago - 41 comments

#60 - Pkg/compat up

Pull Request - State: closed - Opened by kool7d over 3 years ago - 2 comments

#59 - 404 error from function 'getpdbdescription'

Issue - State: closed - Opened by kool7d almost 4 years ago - 2 comments

#58 - Replace Array{T,1} with Vector{1}

Pull Request - State: closed - Opened by rikhuijzer almost 4 years ago - 2 comments

#57 - CompatHelper: bump compat for "StaticArrays" to "1.0"

Pull Request - State: closed - Opened by github-actions[bot] almost 4 years ago - 2 comments

#56 - CompatHelper: bump compat for "HTTP" to "0.9"

Pull Request - State: closed - Opened by github-actions[bot] about 4 years ago - 2 comments

#55 - CompatHelper: bump compat for "DataStructures" to "0.18"

Pull Request - State: closed - Opened by github-actions[bot] over 4 years ago - 2 comments

#54 - Extract fasta from PDB

Issue - State: closed - Opened by Elin- over 4 years ago - 1 comment

#53 - Typo

Pull Request - State: closed - Opened by Brnmdrt over 4 years ago - 1 comment

#52 - Install TagBot as a GitHub Action

Pull Request - State: closed - Opened by JuliaTagBot almost 5 years ago - 1 comment

#51 - ArgParse needed for MIToS' scripts

Issue - State: closed - Opened by diegozea about 5 years ago - 1 comment

#50 - Fix minor bugs

Pull Request - State: closed - Opened by javieriserte over 5 years ago - 4 comments

#49 - Distributed Package imported in scripts but not in the REQUIRE file

Issue - State: closed - Opened by javieriserte over 5 years ago - 2 comments

#48 - Deal with spaces and special characters when parsing Raw files

Issue - State: open - Opened by diegozea almost 6 years ago

#47 - Improve API for Julia 1.0.2 using keyword arguments

Issue - State: closed - Opened by diegozea almost 6 years ago - 2 comments
Labels: enhancement

#46 - IO performance

Issue - State: open - Opened by diegozea almost 6 years ago
Labels: performance

#45 - Run femtocleaner

Issue - State: closed - Opened by diegozea about 6 years ago

#44 - Fix deprecations

Pull Request - State: closed - Opened by femtocleaner[bot] about 6 years ago - 2 comments

#43 - Error tagging new release

Issue - State: closed - Opened by attobot about 6 years ago - 1 comment

#42 - Extra whitespace when writing PDB files with specific coordinates

Issue - State: closed - Opened by pgbarletta over 6 years ago - 7 comments

#41 - Add progress bar to SplitStockholm

Pull Request - State: closed - Opened by ellisvalentiner about 7 years ago - 16 comments

#40 - Use a Progress Bar in SplitStockholm

Issue - State: closed - Opened by diegozea about 7 years ago
Labels: enhancement, help wanted, good first issue, hacktoberfest

#39 - Increase test coverage to 95%

Issue - State: open - Opened by diegozea about 7 years ago
Labels: help wanted, good first issue

#38 - Make use of PkgBenchmark

Issue - State: open - Opened by diegozea about 7 years ago
Labels: help wanted, good first issue

#37 - Run femtocleaner

Pull Request - State: closed - Opened by diegozea about 7 years ago

#36 - Run femtocleaner

Issue - State: closed - Opened by diegozea about 7 years ago

#35 - MIToS 2.0

Pull Request - State: closed - Opened by diegozea about 7 years ago - 1 comment

#34 - Update CI URLs to point to new caching infrastructure

Pull Request - State: closed - Opened by staticfloat over 7 years ago - 1 comment

#33 - don't assume julia is on the path

Pull Request - State: closed - Opened by tkelman over 7 years ago - 1 comment

#32 - FastaIO does not have precompilation enabled

Issue - State: closed - Opened by tkelman about 8 years ago - 3 comments

#31 - add RecipesBase explicitly to REQUIRE

Pull Request - State: closed - Opened by tkelman over 8 years ago - 2 comments

#30 - `count!` performance

Issue - State: closed - Opened by diegozea over 8 years ago - 1 comment

#29 - MIToS should avoid `push!` calls

Issue - State: open - Opened by diegozea over 8 years ago - 1 comment
Labels: help wanted, good first issue

#28 - Write PDB files should include MODEL and TER records

Issue - State: closed - Opened by diegozea over 8 years ago - 1 comment
Labels: bug, enhancement

#27 - Create kabsch.jl

Pull Request - State: closed - Opened by cossio over 8 years ago - 19 comments

#26 - Pfam' AUC: join need labels but estimateincolumns doesn't generate labels

Issue - State: closed - Opened by diegozea over 8 years ago - 2 comments

#25 - Roadmap to MIToS v1.0

Issue - State: closed - Opened by diegozea over 8 years ago - 2 comments
Labels: enhancement

#24 - Set user agent for pdb dowbload

Issue - State: closed - Opened by javieriserte over 8 years ago - 1 comment

#23 - Deal with redirect on download...

Issue - State: closed - Opened by diegozea almost 9 years ago - 3 comments

#22 - Deal with None in SIFTS

Issue - State: closed - Opened by diegozea almost 9 years ago - 1 comment

#21 - Sync to diegozea/MIToS.jl

Pull Request - State: closed - Opened by javieriserte about 9 years ago

#20 - Distances.jl: Incremental RAM usage on file loop

Issue - State: closed - Opened by diegozea about 9 years ago - 1 comment
Labels: bug

#19 - Update README.md

Pull Request - State: closed - Opened by Cristinot about 9 years ago

#18 - Update README.md

Pull Request - State: closed - Opened by Cristinot about 9 years ago - 2 comments

#17 - Update SplitStockholm.jl

Pull Request - State: closed - Opened by Elin- about 9 years ago - 2 comments

#16 - Update AlignedColumns.jl

Pull Request - State: closed - Opened by Elin- about 9 years ago - 1 comment

#15 - Update README.md

Pull Request - State: closed - Opened by Cristinot about 9 years ago - 1 comment

#14 - Merge pull request #1 from diegozea/master

Pull Request - State: closed - Opened by javieriserte about 9 years ago

#13 - Added some comentaries

Pull Request - State: closed - Opened by javieriserte about 9 years ago - 1 comment

#12 - stride hydrogenbond function accepts a path for stride

Pull Request - State: closed - Opened by javieriserte over 9 years ago - 1 comment

#11 - Update InformationMeasures.jl

Pull Request - State: closed - Opened by javieriserte over 9 years ago

#10 - Plot: PDB structures

Issue - State: open - Opened by diegozea over 9 years ago - 2 comments
Labels: enhancement, help wanted, good first issue

#9 - Plot: MI networks

Issue - State: closed - Opened by diegozea over 9 years ago - 1 comment
Labels: enhancement, help wanted

#8 - Write PDB files

Issue - State: closed - Opened by diegozea over 9 years ago - 2 comments
Labels: enhancement

#7 - Make hobohmI() faster

Issue - State: closed - Opened by diegozea over 9 years ago

#6 - Test onlyheavy using a PDB with Hs

Issue - State: closed - Opened by diegozea over 9 years ago - 1 comment

#5 - Test PDBML and SIFTS with problematic PDB files

Issue - State: closed - Opened by diegozea over 9 years ago - 2 comments

#4 - Plot: MSA

Issue - State: closed - Opened by diegozea over 9 years ago - 1 comment
Labels: enhancement, help wanted

#3 - Using the 12 interaction types of PICCOLO

Issue - State: closed - Opened by diegozea over 9 years ago - 11 comments
Labels: bug, enhancement

#2 - Using a limit distance for speed contact calculation between residues

Issue - State: closed - Opened by diegozea over 9 years ago - 1 comment
Labels: enhancement

#1 - Usar _label en PDBML

Issue - State: closed - Opened by diegozea over 9 years ago - 1 comment