Ecosyste.ms: Issues

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GitHub / dials/dials issues and pull requests

#2370 - `dials.rs_mapper`: rotate to crystal frame

Issue - State: open - Opened by dagewa almost 2 years ago

#2369 - Don't combine beam models on output for dials.ssx_index

Pull Request - State: closed - Opened by jbeilstenedmands almost 2 years ago

#2367 - Increase robustness of constrained refinement test

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 2 comments

#2366 - Suppress Gtk terminal junk

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 13 comments

#2365 - More wxpython `TypeError` fixes

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 1 comment

#2364 - Calculate image size limits correctly for data access in `dials.rs_mapper`

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 3 comments

#2363 - Replace `imp` by `importlib`

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 5 comments

#2362 - Multi-panel and multi-experiment `dials.rs_mapper`

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 4 comments

#2361 - Allow Unity builds, and enable for windows CI

Pull Request - State: closed - Opened by ndevenish almost 2 years ago

#2360 - `dials.export_bitmaps` with resolution rings

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 6 comments

#2359 - DIALS 3.13.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 2 years ago
Labels: upcoming release

#2358 - Platform-dependent path splitting

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 2 comments

#2357 - Run full dials-data-regression testing on windows CI

Pull Request - State: closed - Opened by ndevenish almost 2 years ago

#2356 - Pass fully-resolved path to `subprocess.run()`, part 2

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 1 comment

#2353 - dials.merge: optionally save half datasets to merged mtz output

Pull Request - State: closed - Opened by jbeilstenedmands almost 2 years ago

#2347 - `dials.find_spots mp.method=sge` broken

Issue - State: closed - Opened by rjgildea almost 2 years ago

#2347 - `dials.find_spots mp.method=sge` broken

Issue - State: closed - Opened by rjgildea almost 2 years ago

#2344 - Filter matplotlib-related warnings

Pull Request - State: closed - Opened by rjgildea almost 2 years ago - 1 comment

#2342 - Handle blank ids

Pull Request - State: closed - Opened by phyy-nx almost 2 years ago - 4 comments

#2341 - dials.scale: absorption_level=medium and =high give worse merging stats

Issue - State: open - Opened by graeme-winter almost 2 years ago
Labels: enhancement

#2340 - Little graphical issues with macOS Ventura / M2

Issue - State: closed - Opened by graeme-winter almost 2 years ago - 5 comments
Labels: bug

#2339 - Data processing with missing images

Issue - State: closed - Opened by dagewa almost 2 years ago - 4 comments

#2338 - Unpin setuptools, pytest, allow Python 3.11

Pull Request - State: closed - Opened by ndevenish almost 2 years ago - 1 comment

#2336 - Separate independent blocks of experiments in refinement

Pull Request - State: closed - Opened by dagewa about 2 years ago - 17 comments

#2334 - Handle case of corrupt/unreadable image files in dials.import

Pull Request - State: open - Opened by jbeilstenedmands about 2 years ago - 3 comments

#2333 - dials.rs_mapper does not work for multi-panel detectors

Issue - State: closed - Opened by dagewa about 2 years ago - 7 comments

#2323 - Update `dials.combine_experiments`

Pull Request - State: closed - Opened by jbeilstenedmands about 2 years ago - 1 comment

#2320 - dials.cosym applies an incompatible reindexing operator

Issue - State: open - Opened by biochem-fan about 2 years ago - 13 comments

#2318 - Clustering index descending from 0

Pull Request - State: open - Opened by Baharis about 2 years ago - 1 comment
Labels: PR: merge conflicts

#2305 - dials.index refinement mode=None only works for stills indexer

Issue - State: closed - Opened by PrinceWalnut about 2 years ago - 1 comment

#2302 - dials.import: add option to respect input order

Issue - State: closed - Opened by graeme-winter about 2 years ago - 2 comments

#2297 - DIALS 3.12.1 with DUI - issue when importing images with beam center setting

Issue - State: closed - Opened by qitsweauca about 2 years ago - 2 comments

#2294 - Be consistent with verbs in command line programs

Issue - State: closed - Opened by graeme-winter about 2 years ago

#2285 - `exclude_images` syntax is inconsistent between programs

Issue - State: closed - Opened by cdavidowen about 2 years ago - 3 comments

#2278 - Log the image template

Pull Request - State: closed - Opened by dagewa about 2 years ago - 6 comments

#2277 - Add CodeQL workflow for GitHub code scanning

Pull Request - State: closed - Opened by lgtm-com[bot] about 2 years ago - 2 comments

#2276 - Slicing a reflection table drops the identifier map

Issue - State: closed - Opened by phyy-nx about 2 years ago - 2 comments

#2261 - dials.pixel_histogram

Pull Request - State: open - Opened by graeme-winter over 2 years ago - 1 comment

#2260 - Exception handling with print()

Issue - State: closed - Opened by graeme-winter over 2 years ago

#2256 - dials.reciprocal_lattice_viewer: make it work for still images

Issue - State: closed - Opened by graeme-winter over 2 years ago - 2 comments

#2250 - python quits unexpectedly when closing image viewer on some macs

Issue - State: closed - Opened by toastisme over 2 years ago - 4 comments

#2243 - Building on Ubuntu 22.04 from clean bootstrap intermittently fails

Issue - State: closed - Opened by graeme-winter over 2 years ago - 3 comments

#2242 - new (sort of) dependency on `packaging`

Issue - State: closed - Opened by dwpaley over 2 years ago - 3 comments

#2239 - dials.find_spots error

Issue - State: closed - Opened by KevinBattaile over 2 years ago - 7 comments

#2235 - dials.refine: possible to block-diagonalise the matrix?

Issue - State: closed - Opened by graeme-winter over 2 years ago - 2 comments

#2234 - dials.scale: should stop if incompatible input

Issue - State: closed - Opened by graeme-winter over 2 years ago - 3 comments

#2233 - `dials.find_rotation_axis` may require an enormous amount of RAM

Issue - State: closed - Opened by dagewa over 2 years ago - 4 comments

#2232 - Add dials.filter_blanks

Pull Request - State: open - Opened by graeme-winter over 2 years ago - 20 comments

#2228 - How do I tell xia/dials that the full dataset is two different sweeps?

Issue - State: closed - Opened by murpholinox over 2 years ago - 4 comments

#2227 - dials.import seems to require a surprising amount of ram (sometimes)

Issue - State: open - Opened by graeme-winter over 2 years ago - 5 comments

#2221 - Internal inconsistency between how we record positions

Issue - State: open - Opened by graeme-winter over 2 years ago - 2 comments
Labels: stale

#2215 - We should not import code from command line programs?

Issue - State: open - Opened by graeme-winter over 2 years ago - 1 comment
Labels: stale

#2213 - Mark dials.find_spots_{server,client} as deprecated

Pull Request - State: closed - Opened by rjgildea over 2 years ago - 6 comments

#2211 - Minor find_spots_server tweaks

Pull Request - State: closed - Opened by ndevenish over 2 years ago - 1 comment
Labels: stale, PR: merge conflicts

#2210 - dials.scale: with multi-wavelength data should merge each wavelength separately (by default)

Issue - State: open - Opened by graeme-winter over 2 years ago - 9 comments
Labels: enhancement, stale

#2205 - dials.import_xds needs a better interface and documentation

Issue - State: open - Opened by dagewa over 2 years ago - 4 comments
Labels: stale

#2202 - structure of l-cys?

Issue - State: closed - Opened by murpholinox over 2 years ago - 19 comments

#2193 - DIALS cheatsheet is chronically out of date

Issue - State: closed - Opened by rjgildea over 2 years ago - 2 comments

#2191 - error model refinement in dials.scale appears unstable

Issue - State: open - Opened by huwjenkins over 2 years ago - 5 comments
Labels: enhancement

#2190 - `image_viewer`: beam center position is shifted by (0.5, 0.5)

Issue - State: open - Opened by elena-pascal over 2 years ago - 11 comments
Labels: stale

#2187 - dials.find_spots crashes

Issue - State: closed - Opened by murpholinox over 2 years ago - 12 comments

#2174 - dials.image_viewer: stacking messes with trusted_range mask

Issue - State: closed - Opened by dagewa over 2 years ago - 7 comments
Labels: stale

#2170 - Simple 2D integration

Issue - State: closed - Opened by dagewa over 2 years ago - 4 comments
Labels: stale

#2170 - Simple 2D integration

Issue - State: closed - Opened by dagewa over 2 years ago - 4 comments
Labels: stale

#2161 - What is our coordinate system, exactly?

Issue - State: closed - Opened by graeme-winter over 2 years ago - 2 comments
Labels: stale

#2158 - Merging statistics table is off by one column for centrosymmetric space group

Issue - State: closed - Opened by biochem-fan over 2 years ago - 3 comments
Labels: dials.scale, stale

#2153 - Error when opening Reciprocal lattice viewer on windows

Issue - State: closed - Opened by WilliamLewis-X-ray over 2 years ago - 5 comments
Labels: stale

#2142 - Image viewer: if low resolution screen user cannot see all of "controls"

Issue - State: closed - Opened by graeme-winter over 2 years ago - 4 comments
Labels: stale

#2141 - `dials.report`: separate plots vs image number by image sequence

Issue - State: open - Opened by graeme-winter over 2 years ago - 5 comments
Labels: stale

#2130 - dials.symmetry fails on multi-lattice data

Issue - State: closed - Opened by graeme-winter over 2 years ago - 3 comments
Labels: stale

#2123 - dials.symmetry divide by zero

Issue - State: open - Opened by dagewa over 2 years ago - 6 comments

#2123 - dials.symmetry divide by zero

Issue - State: open - Opened by dagewa over 2 years ago - 6 comments

#2113 - Move flex_table to dxtbx

Pull Request - State: closed - Opened by toastisme over 2 years ago - 6 comments
Labels: dials_core

#2111 - Make scan slicing sane

Issue - State: closed - Opened by dagewa over 2 years ago - 3 comments
Labels: stale

#2111 - Make scan slicing sane

Issue - State: open - Opened by dagewa over 2 years ago - 2 comments
Labels: stale

#2109 - `dials.image_viewer` does not work in `conda` build

Issue - State: closed - Opened by dennisbrookner almost 3 years ago - 5 comments
Labels: stale

#2108 - WIP: Spotfinder: new method ``omit`` for resolution filtering

Pull Request - State: open - Opened by dwpaley almost 3 years ago - 6 comments
Labels: stale, PR: merge conflicts

#2076 - DIALS has a cyclic dependency on the xfel module

Issue - State: open - Opened by ndevenish almost 3 years ago - 8 comments
Labels: stale

#2072 - Give the user *some hint* what data were being processed

Issue - State: closed - Opened by graeme-winter almost 3 years ago - 5 comments

#2060 - Need an issue template

Issue - State: closed - Opened by Anthchirp almost 3 years ago - 1 comment

#2057 - MTZ output: sort order

Issue - State: closed - Opened by dagewa almost 3 years ago - 2 comments
Labels: dials.export

#2042 - [Feature Request] dials.symmetry Should Use a Fourier Analysis to Detect Screw Axes

Issue - State: closed - Opened by kmdalton almost 3 years ago - 8 comments
Labels: stale

#2034 - Avoid Scan dereference in parallel_integrator and parallel_reference_profiler

Pull Request - State: closed - Opened by toastisme almost 3 years ago - 3 comments
Labels: stale, PR: merge conflicts

#2029 - Tutorial error for `dials.refine_bravais_settings`

Issue - State: closed - Opened by dagewa almost 3 years ago - 6 comments
Labels: stale

#2009 - radial_profile threshold algorithm

Pull Request - State: closed - Opened by dagewa almost 3 years ago - 8 comments

#1992 - Strange result from dials.integrate's exclude_images option

Issue - State: closed - Opened by dagewa about 3 years ago - 37 comments
Labels: stale

#1984 - "*" symbol in the CC1/2 column distorts the merging statistics table

Issue - State: closed - Opened by biochem-fan about 3 years ago - 3 comments
Labels: stale

#1979 - rlv fails on WSL

Issue - State: closed - Opened by dagewa about 3 years ago - 9 comments
Labels: stale

#1964 - Polygon mask mode cannot be deactivated once you click outside a panel

Issue - State: closed - Opened by biochem-fan about 3 years ago - 3 comments
Labels: bug, dials.image_viewer

#1961 - Export bitmap with resolution rings

Issue - State: closed - Opened by dagewa about 3 years ago - 2 comments
Labels: stale

#1935 - Problems in the multi-crystal symmetry and scaling tutorial

Issue - State: closed - Opened by dagewa about 3 years ago - 1 comment

#1919 - DIALS does not bootstrap on RHEL8

Issue - State: closed - Opened by Anthchirp about 3 years ago - 8 comments

#1918 - bootstrap: please report current branches each repo on at end

Issue - State: closed - Opened by graeme-winter about 3 years ago - 2 comments
Labels: enhancement, stale

#1918 - bootstrap: please report current branches each repo on at end

Issue - State: closed - Opened by graeme-winter about 3 years ago - 2 comments
Labels: enhancement, stale