Ecosyste.ms: Issues

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GitHub / dials/dials issues and pull requests

#2583 - Move the common function to a separate cmake file

Pull Request - State: closed - Opened by namannimmo10 about 1 year ago - 1 comment

#2582 - `dials.find_rotation_axis`: search out-of-plane angle

Issue - State: open - Opened by dagewa about 1 year ago

#2580 - Add resolution estimation based on CC1/2 significance

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago

#2579 - Minimize config files used in the project

Pull Request - State: closed - Opened by namannimmo10 about 1 year ago - 1 comment

#2578 - Pin Gemmi to 0.6.3

Pull Request - State: closed - Opened by ndevenish about 1 year ago - 8 comments

#2577 - dials.sequence_to_stills does not work on imported, strong data

Issue - State: open - Opened by graeme-winter about 1 year ago - 1 comment

#2576 - Update ellipsoid equality test

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 1 comment

#2575 - [3.17] test_RefinerData assert 628.3185201014512 == 628.3185201014513

Issue - State: closed - Opened by picca about 1 year ago - 1 comment

#2570 - Print helpful error message in dials.slice_sequence in case of invalid input.

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 2 comments

#2569 - dials.export is broken with "Error: can't set attribute"

Issue - State: closed - Opened by biochem-fan about 1 year ago - 3 comments

#2568 - Fix fitting issues for isigma, misigma curves in dials.estimate_resolution

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 1 comment

#2567 - dials.index: extend input experiment list

Pull Request - State: open - Opened by jbeilstenedmands about 1 year ago - 9 comments

#2565 - Add `exclude_images_multiple` option to `dials.slice_sequence`

Pull Request - State: closed - Opened by dagewa about 1 year ago - 1 comment

#2564 - `joint_indexing=False` should be the default for stills experiments

Issue - State: open - Opened by dagewa about 1 year ago - 1 comment

#2563 - Temporarily skip `test_basic_threaded_integrate`

Pull Request - State: closed - Opened by dagewa about 1 year ago

#2562 - Pyside2 and DUI

Issue - State: closed - Opened by double00six about 1 year ago - 4 comments

#2561 - Add wildcard option to exclude_images

Pull Request - State: open - Opened by graeme-winter about 1 year ago - 2 comments

#2560 - dials.scale: allow wildcard for experiment in exclude_images

Issue - State: open - Opened by graeme-winter about 1 year ago - 5 comments

#2559 - image_viewer open in background by default?

Issue - State: closed - Opened by ndevenish about 1 year ago - 5 comments

#2557 - Update tests to reflect Scan and dials-data changes

Pull Request - State: closed - Opened by toastisme about 1 year ago

#2556 - Use ImageSequences in ssx workflow

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago

#2555 - Better support of pseudo-merohedral twinning

Issue - State: open - Opened by biochem-fan about 1 year ago - 1 comment
Labels: enhancement

#2554 - `dials.sequence_to_stills`: skip images with no reflections

Pull Request - State: closed - Opened by dagewa about 1 year ago - 1 comment

#2553 - Allow `dials.predict` to work without images

Pull Request - State: open - Opened by dagewa about 1 year ago - 7 comments

#2551 - Fix program docs PHIL string for `dials.refine`

Pull Request - State: closed - Opened by dagewa over 1 year ago

#2550 - Correct spelling mistakes using codespell

Pull Request - State: closed - Opened by dagewa over 1 year ago - 2 comments

#2549 - Export unmerged mtz with gemmi python

Pull Request - State: closed - Opened by dagewa over 1 year ago - 3 comments

#2548 - Attempted fix for cosym reindex bug #2486

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 7 comments

#2547 - Switch bootstrapping to new conda-forge::boost- structure

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#2546 - bootstrap: Always use environment variables for build

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 2 comments
Labels: backport

#2545 - Don't lose unindexed reflections in indexers

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 4 comments

#2544 - Fix bootstrap --cmake with preloaded CCP4

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#2543 - Add a "show all parameters" flag for all DIALS programs

Issue - State: open - Opened by phyy-nx over 1 year ago - 6 comments

#2542 - Online documentation out of date re: default for scan_varying refinement

Issue - State: closed - Opened by maggie-klureza over 1 year ago - 4 comments

#2541 - `dials.index` with known crystal, but new experiments

Issue - State: open - Opened by dagewa over 1 year ago

#2538 - dials.index: fix for multi-imageset + joint_indexing=False

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 2 comments

#2537 - Remove duplicate debug parameter in ssx_integrate. Fixes #2536

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#2536 - Dumping shoeboxes from `dials.ssx_integrate`

Issue - State: closed - Opened by dagewa over 1 year ago

#2535 - Ellipsoid profile model scale factor in mask calculation

Pull Request - State: closed - Opened by dagewa over 1 year ago - 3 comments

#2534 - Handle shared models in dials.index with known orientations

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#2533 - repredict_only mode breaks stills_process

Issue - State: open - Opened by dermen over 1 year ago

#2532 - Developer bootstrap.py install fails on MacOS Sonoma

Issue - State: closed - Opened by alyubimov over 1 year ago - 24 comments

#2531 - dials.integrate, dials.export_best have problems with EIGER 16M data

Issue - State: closed - Opened by dmszebenyi over 1 year ago - 1 comment

#2529 - codespell

Issue - State: closed - Opened by dagewa over 1 year ago - 4 comments

#2528 - Sourceforge really is no more

Pull Request - State: closed - Opened by graeme-winter over 1 year ago - 7 comments

#2527 - dials.import_xds is useless

Issue - State: closed - Opened by graeme-winter over 1 year ago - 2 comments

#2526 - Add check for compatible cells in cosym output

Pull Request - State: open - Opened by jbeilstenedmands over 1 year ago - 2 comments
Labels: PR: merge conflicts

#2525 - Add include_datasets as an alias for use_datasets in dials.scale

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#2523 - Fix log output line in dials.symmetry.

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#2522 - Build fail with bootstrap.py for Mac OSX Ventura 13.6

Issue - State: closed - Opened by toastisme over 1 year ago - 7 comments

#2520 - `dials_sequence_to_stills` trimmed scan fix

Pull Request - State: closed - Opened by dagewa over 1 year ago - 1 comment

#2518 - Add mosaicity_max_limit option to dials.ssx_integrate

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago

#2517 - `dials.sequence_to_stills` improvements

Pull Request - State: closed - Opened by dagewa over 1 year ago - 1 comment

#2515 - Overriding geometry on import resets beam Probe

Issue - State: closed - Opened by dagewa over 1 year ago - 3 comments

#2514 - Fix `exclude_images_multiple` for trimmed scans

Pull Request - State: closed - Opened by dagewa over 1 year ago

#2513 - image_viewer png save not working

Issue - State: closed - Opened by keeble over 1 year ago - 2 comments

#2513 - image_viewer png save not working

Issue - State: closed - Opened by keeble over 1 year ago - 2 comments

#2512 - Rmeas, Rmerge and Rpim bigger when using dials vs dials-aimless?

Issue - State: closed - Opened by murpholinox over 1 year ago - 3 comments

#2511 - Shorthand to exclude regular calibration images

Pull Request - State: closed - Opened by dagewa over 1 year ago - 2 comments

#2505 - MTZ export with an unsupported space group setting

Issue - State: closed - Opened by dagewa over 1 year ago - 8 comments

#2503 - Cosym: don't fill wij matrix where the overlap is less than min_pairs

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 2 comments

#2502 - dials.import error for h5 image files

Issue - State: closed - Opened by DHekstra over 1 year ago - 5 comments

#2501 - Add r-free flags generation to merging function

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago

#2500 - dials.cosym and dials.symmetry resolution estimates vary considerably

Issue - State: closed - Opened by huwjenkins over 1 year ago - 10 comments

#2499 - Improve cc1/2 fit for resolution estimation on noisy data

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 4 comments

#2498 - Issue with reading in MarCCD images

Issue - State: closed - Opened by DHekstra over 1 year ago - 3 comments

#2497 - Possible bug fix for 2486

Pull Request - State: open - Opened by graeme-winter over 1 year ago - 2 comments

#2496 - dials.image_viewer fails to show a full CBF example in CBFlib

Issue - State: closed - Opened by biochem-fan over 1 year ago - 1 comment
Labels: dials.image_viewer

#2495 - DIALS 3.16.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server over 1 year ago - 1 comment
Labels: upcoming release

#2494 - Turn off cxi.merge integration pickles

Pull Request - State: closed - Opened by phyy-nx over 1 year ago - 1 comment

#2493 - Reduce randomness of free flags generation test

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#2492 - Fix test failures caused by dxtbx@831061f

Pull Request - State: closed - Opened by ndevenish over 1 year ago

#2491 - dials.merge: Fix potential for crash with r_free_flags.extend=True if there are no new flags to extend

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment
Labels: backported

#2490 - dials.import, convert_stills_to_sequences=True + image_range=x,y

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#2489 - Remove xfel-test-skipping for tests that no longer need xfel

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#2488 - DIALS fails to import cbf from Pilatus3 1M at BL02B1, SPRING-8

Issue - State: closed - Opened by ndevenish over 1 year ago - 20 comments

#2487 - dials.symmetry should also print the unit cell

Issue - State: closed - Opened by graeme-winter over 1 year ago

#2486 - dials.cosym finds the right operator but puts it wrongly

Issue - State: closed - Opened by biochem-fan over 1 year ago - 31 comments
Labels: bug

#2484 - `dials.image_viewer`: remove basis vector display

Pull Request - State: closed - Opened by dagewa over 1 year ago - 1 comment

#2483 - `dials.rlv` - handle cases where the beam centre cannot be set

Pull Request - State: closed - Opened by dagewa over 1 year ago - 1 comment

#2482 - Beam model probe changes in `dials.show` tests.

Pull Request - State: closed - Opened by dagewa over 1 year ago - 2 comments

#2481 - Cannot change settings in dials.recprocal_lattice_viewer when the detector swing angle is larger than 90

Issue - State: closed - Opened by biochem-fan over 1 year ago - 8 comments
Labels: bug, dials.reciprocal_lattice_viewer

#2480 - `dials.image_viewer` basis vector display is problematic

Issue - State: closed - Opened by dagewa over 1 year ago - 2 comments

#2479 - Fix `dials.image_viewer` crash when the detector swing angle is larger than 90°

Pull Request - State: closed - Opened by dagewa over 1 year ago - 8 comments