Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dials/dials issues and pull requests

#2684 - dials.merge does not write a space group name P2111

Issue - State: closed - Opened by biochem-fan 7 months ago - 3 comments

#2683 - Docstrings and type hints for `reindex_experiments` and `reindex_reflections`

Pull Request - State: closed - Opened by dagewa 8 months ago - 1 comment

#2681 - Data id fix

Pull Request - State: closed - Opened by amyjaynethompson 8 months ago

#2680 - Fix Pinkindexer Bug

Pull Request - State: closed - Opened by kmdalton 8 months ago - 1 comment

#2679 - Don't modify in place for flex.reflection_table.concat

Pull Request - State: closed - Opened by jbeilstenedmands 8 months ago - 1 comment

#2678 - Change logger statements in spot finding to use f-strings

Pull Request - State: closed - Opened by toastisme 8 months ago - 1 comment

#2677 - Add option to save reflection table to a HDF5 file format

Pull Request - State: closed - Opened by jbeilstenedmands 8 months ago - 10 comments

#2676 - Add MCD outlier rejection to stills

Pull Request - State: open - Opened by phyy-nx 8 months ago - 8 comments

#2675 - Switch linting/formatting to ruff

Pull Request - State: closed - Opened by ndevenish 8 months ago

#2673 - Fix issue with cosym cc_weights calculation for low n

Pull Request - State: closed - Opened by jbeilstenedmands 8 months ago

#2672 - Add dials.split_still_data utility program

Pull Request - State: closed - Opened by jbeilstenedmands 8 months ago

#2671 - With clustering tables

Pull Request - State: closed - Opened by amyjaynethompson 8 months ago

#2670 - Add reflection selection criteria to `dials.find_rotation_axis`

Pull Request - State: closed - Opened by dagewa 9 months ago - 1 comment

#2669 - Failure to read old (2019) I03 data

Issue - State: closed - Opened by dagewa 9 months ago - 3 comments

#2668 - Fix recent ccweights code for uncalculable correlations

Pull Request - State: closed - Opened by jbeilstenedmands 9 months ago

#2667 - Reset reflection table ids in image grouping code

Pull Request - State: closed - Opened by jbeilstenedmands 9 months ago - 1 comment

#2666 - Add weighting option to cosym CC calculation

Pull Request - State: closed - Opened by jbeilstenedmands 9 months ago

#2665 - Explicit erosion

Pull Request - State: closed - Opened by graeme-winter 9 months ago - 2 comments

#2664 - Trap d_min > d_max in masking

Pull Request - State: closed - Opened by graeme-winter 9 months ago - 1 comment

#2663 - Trivial: if d_max < d_min throw error

Issue - State: closed - Opened by graeme-winter 9 months ago

#2662 - Enable time-of-flight indexing and Laue/ToF refinement

Pull Request - State: closed - Opened by toastisme 9 months ago - 6 comments

#2661 - Add option to apply partiality correction for ellipsoid integration.

Pull Request - State: closed - Opened by jbeilstenedmands 9 months ago - 3 comments

#2660 - Fix dials.show for time of flight experiments.

Pull Request - State: closed - Opened by toastisme 9 months ago

#2659 - dials.refine does not write out the refined orientation of a multi-axis goniometer

Issue - State: open - Opened by dagewa 10 months ago - 1 comment
Labels: bug

#2658 - Allow `dials.find_rotation_axis` to work with multi-axis goniometers

Pull Request - State: closed - Opened by dagewa 10 months ago - 1 comment

#2657 - Document: distance calculation for morphological erosion

Issue - State: open - Opened by graeme-winter 10 months ago - 3 comments

#2655 - Can we improve the plotly mouseover tooltips for resolution?

Issue - State: open - Opened by dagewa 10 months ago - 3 comments
Labels: enhancement

#2653 - dials.index: do not write out reflections for removed experiments

Pull Request - State: closed - Opened by dagewa 10 months ago - 6 comments

#2652 - `dials.index` writes out reflections for a rejected experiment

Issue - State: closed - Opened by dagewa 10 months ago - 4 comments
Labels: bug

#2651 - Enable Python 3.12

Pull Request - State: closed - Opened by ndevenish 10 months ago

#2650 - dials.integrate d_min= should be obvious

Issue - State: closed - Opened by graeme-winter 10 months ago - 4 comments

#2649 - XFEL regression: try using the conda-forge channel

Pull Request - State: closed - Opened by phyy-nx 10 months ago - 3 comments

#2648 - Update gltbx presence test for RLV

Pull Request - State: closed - Opened by ndevenish 10 months ago

#2647 - dials.import_xds shows no signs of working

Issue - State: open - Opened by graeme-winter 10 months ago - 6 comments

#2646 - Fix crash in exporting scaled still-shot data with dials.export

Pull Request - State: closed - Opened by jbeilstenedmands 10 months ago - 1 comment

#2645 - Add mesa-libGL to linux bootstrap installations

Pull Request - State: closed - Opened by ndevenish 10 months ago

#2644 - Fix RHEL8+ gltbx compilation

Pull Request - State: closed - Opened by ndevenish 10 months ago - 2 comments

#2643 - DIALS 3.18.2

Pull Request - State: closed - Opened by DiamondLightSource-build-server 10 months ago - 1 comment
Labels: upcoming release, PR: merge conflicts

#2642 - Fix error in propagation of partiality variance for scaling still shot data

Pull Request - State: closed - Opened by jbeilstenedmands 10 months ago - 1 comment

#2641 - Remove all find_spots_server tests

Pull Request - State: closed - Opened by ndevenish 10 months ago

#2640 - Resolution estimation fails with data from image plates

Issue - State: closed - Opened by graeme-winter 10 months ago - 1 comment

#2639 - `reflection_table.extract_shoeboxes` unexpectedly returns empty shoeboxes

Issue - State: open - Opened by LuisA92 10 months ago - 3 comments

#2638 - Unused parameter nthreads

Pull Request - State: closed - Opened by graeme-winter 10 months ago - 1 comment

#2636 - wxPython reverted to 4.1 on release

Issue - State: closed - Opened by ndevenish 11 months ago

#2635 - DIALS 3.18.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server 11 months ago - 1 comment
Labels: upcoming release

#2634 - dials.ssx_index: only combine detector models if they have not been refined

Pull Request - State: closed - Opened by jbeilstenedmands 11 months ago - 1 comment

#2633 - Update wxPython minimum version

Pull Request - State: closed - Opened by ndevenish 11 months ago - 1 comment

#2632 - Dials correlation matrix

Pull Request - State: closed - Opened by amyjaynethompson 11 months ago

#2631 - Error: dials.export subprocess failed with exitcode 1

Issue - State: open - Opened by mysecondnameisdanger 11 months ago - 4 comments

#2630 - `dials.predict ignore_shadows=False` is broken

Issue - State: closed - Opened by dagewa 11 months ago - 2 comments

#2629 - radiation damage series?

Issue - State: closed - Opened by mysecondnameisdanger 11 months ago - 6 comments

#2627 - Remove references to Experiment.is_still() and Experiments.all_sequences

Pull Request - State: closed - Opened by toastisme 11 months ago - 1 comment

#2626 - Added filter to TOFSpotFinder._post_process

Pull Request - State: closed - Opened by toastisme 11 months ago

#2625 - DIALS σ(I) estimates are considerably smaller than those from XDS

Issue - State: open - Opened by dagewa 11 months ago - 27 comments

#2624 - dials.export format=shelx: Increase number of decimal places in .ins file

Pull Request - State: closed - Opened by huwjenkins 11 months ago - 1 comment

#2622 - Use Mamba to install CI build dependencies

Pull Request - State: closed - Opened by benjaminhwilliams 11 months ago - 7 comments

#2619 - Rationalise discovery of available memory and CPUs

Pull Request - State: closed - Opened by benjaminhwilliams 12 months ago - 2 comments

#2618 - Unpin gemmi version

Pull Request - State: closed - Opened by jbeilstenedmands 12 months ago - 1 comment

#2617 - Fix scipy deprecation warning and doc build failure in pinkindexer.py

Pull Request - State: closed - Opened by jbeilstenedmands 12 months ago - 1 comment

#2616 - Test setting distance for multipanel detectors

Pull Request - State: closed - Opened by dagewa 12 months ago - 2 comments

#2615 - Add the ellipsoid profile model as an option in dials.stills_process

Pull Request - State: open - Opened by jbeilstenedmands 12 months ago - 1 comment

#2613 - Update cctbx prebuilt dependencies to 2024 releases

Pull Request - State: closed - Opened by ndevenish 12 months ago

#2612 - write the diff to disk

Pull Request - State: open - Opened by dermen 12 months ago - 4 comments

#2611 - Dependencies for natural sort

Pull Request - State: closed - Opened by graeme-winter 12 months ago - 1 comment

#2610 - Attempt another doc build fix

Pull Request - State: closed - Opened by dagewa 12 months ago - 2 comments
Labels: PR: merge conflicts

#2608 - Small molecule tutorial should use `dials.export format=shelx`

Issue - State: closed - Opened by dagewa 12 months ago - 11 comments

#2607 - `dials.refine`: better error message on failure with a zero length reflection list

Pull Request - State: closed - Opened by dagewa 12 months ago - 1 comment

#2606 - Have scan oscillation overrides changed to use radians?

Issue - State: closed - Opened by dagewa 12 months ago - 2 comments

#2605 - `joint indexing=False` for stills experiments

Pull Request - State: open - Opened by dagewa 12 months ago - 5 comments

#2604 - Pinkindexer

Pull Request - State: closed - Opened by kmdalton almost 1 year ago - 11 comments

#2603 - Remove % from dials.index % indexed column.

Pull Request - State: closed - Opened by toastisme almost 1 year ago - 1 comment

#2602 - Add tof spotfinding

Pull Request - State: closed - Opened by toastisme almost 1 year ago

#2601 - DIALS 3.17.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 1 year ago - 1 comment
Labels: upcoming release, PR: merge conflicts

#2600 - Remove more RLV references in docs

Pull Request - State: closed - Opened by benjaminhwilliams about 1 year ago

#2599 - Docs build fix

Pull Request - State: closed - Opened by benjaminhwilliams about 1 year ago - 1 comment

#2598 - Docs fix

Pull Request - State: closed - Opened by benjaminhwilliams about 1 year ago - 1 comment

#2597 - CI/CD tasks - RSE project

Issue - State: open - Opened by namannimmo10 about 1 year ago - 2 comments

#2596 - Attempt to update conda in CI

Pull Request - State: closed - Opened by phyy-nx about 1 year ago - 2 comments

#2595 - `dials.image_viewer` locale failure on WSL Ubuntu 22.04

Issue - State: closed - Opened by dagewa about 1 year ago - 7 comments

#2594 - Fix image viewer crash for still experiments introduced in #2556

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 2 comments

#2593 - Can no longer open data integrated by `dials.ssx_integrate` in the image viewer

Issue - State: closed - Opened by dagewa about 1 year ago - 2 comments

#2592 - Hide gemmi imports so `ImportError` is not raised unless gemmi is used

Pull Request - State: closed - Opened by Baharis about 1 year ago - 10 comments

#2590 - update for changes in fmodel

Pull Request - State: closed - Opened by dcliebschner about 1 year ago - 1 comment

#2589 - `dials.ssx_integrate`: do not write out zero-length reflection list

Issue - State: open - Opened by dagewa about 1 year ago - 2 comments

#2588 - cmake: generate coverage info for GNU and Clang

Pull Request - State: open - Opened by namannimmo10 about 1 year ago

#2587 - Logging in `stills_indexer.py` suddenly stopped working

Issue - State: closed - Opened by Baharis about 1 year ago - 1 comment
Labels: dials.stills_process

#2586 - Warn about unused `indexing.refinement_protocol` params

Pull Request - State: closed - Opened by Baharis about 1 year ago - 5 comments
Labels: dials.stills_process

#2585 - Treatment of non-uniformly sized pixels

Issue - State: open - Opened by graeme-winter about 1 year ago - 6 comments
Labels: enhancement, question, request for comments :speech_balloon:

#2584 - Unexpected behavior of `d_min_start` in `dials.stills_process`

Issue - State: closed - Opened by Baharis about 1 year ago - 5 comments
Labels: dials.stills_process