Ecosyste.ms: Issues

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GitHub / dials/dials issues and pull requests

#2844 - Usage tracking in DIALS

Issue - State: open - Opened by phyy-nx 6 days ago - 1 comment

#2843 - Update funding in README

Pull Request - State: open - Opened by phyy-nx 6 days ago

#2842 - Copy create_installer.py from libtbx and update for Python 3.12

Pull Request - State: closed - Opened by ndevenish 22 days ago - 1 comment

#2840 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago

#2839 - More fixes for gemmi 0.7

Pull Request - State: closed - Opened by dagewa about 2 months ago

#2838 - Avoid `FutureWarning` in test

Pull Request - State: closed - Opened by dagewa about 2 months ago - 1 comment

#2836 - Fix image viewer prints exception when closing with ring tool open

Pull Request - State: closed - Opened by dagewa about 2 months ago

#2835 - Indexer creation overhead for `ffbidx`

Issue - State: open - Opened by dagewa about 2 months ago

#2834 - Fix for gemmi 0.7

Pull Request - State: closed - Opened by dagewa about 2 months ago

#2833 - Add documentation link for search_beam_position function

Pull Request - State: closed - Opened by mpks about 2 months ago

#2832 - gemmi < 0.7

Pull Request - State: closed - Opened by dagewa about 2 months ago

#2831 - Investigate multiprocessing for `dials.refine`

Issue - State: open - Opened by dagewa 2 months ago - 1 comment

#2830 - Fix trusted range mask display bug when viewing stacked images

Pull Request - State: closed - Opened by dagewa 2 months ago

#2829 - What are strictly necessary files after processing datasets?

Issue - State: closed - Opened by mysecondnameisdanger 2 months ago - 4 comments

#2827 - dials.index: report unindexed non-ice-ring reflections

Pull Request - State: open - Opened by graeme-winter 2 months ago - 8 comments

#2825 - Some duplicate HKLs in exported hklout

Issue - State: open - Opened by tianyu-liu 2 months ago - 4 comments

#2824 - Reduce memory for refine_bravais_settings

Pull Request - State: closed - Opened by graeme-winter 2 months ago - 3 comments

#2822 - Avoid invalid input for `IntCtrl`s

Pull Request - State: closed - Opened by dagewa 2 months ago - 1 comment

#2821 - Fix dials.symmetry debug log call formatting

Pull Request - State: closed - Opened by jbeilstenedmands 2 months ago

#2820 - Add DIALS_NOBANNER to dials.show test_dials_show_on_scaled_data

Pull Request - State: closed - Opened by graeme-winter 2 months ago - 4 comments

#2819 - Delete .codecov.yml

Pull Request - State: closed - Opened by LoreRizzetto 2 months ago

#2819 - Delete .codecov.yml

Pull Request - State: closed - Opened by LoreRizzetto 2 months ago

#2818 - Don't apply sigma correction to scaled data in cosym

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago

#2818 - Don't apply sigma correction to scaled data in cosym

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago

#2817 - No `dials.data` on Windows

Issue - State: open - Opened by dagewa 3 months ago

#2816 - Feature: add split= to dials.import

Pull Request - State: closed - Opened by graeme-winter 3 months ago - 6 comments

#2816 - Feature: add split= to dials.import

Pull Request - State: closed - Opened by graeme-winter 3 months ago - 6 comments

#2815 - dials.import: add simple mechanism to import data set as 3 chunks

Issue - State: closed - Opened by graeme-winter 3 months ago - 7 comments

#2815 - dials.import: add simple mechanism to import data set as 3 chunks

Issue - State: closed - Opened by graeme-winter 3 months ago - 7 comments

#2813 - Weight the cosym objective function

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago - 2 comments

#2811 - `dials.image_viewer`: save as PDF only exports one quadrant of the image

Issue - State: open - Opened by dagewa 3 months ago - 4 comments

#2811 - `dials.image_viewer`: save as PDF only exports one quadrant of the image

Issue - State: open - Opened by dagewa 3 months ago - 4 comments

#2809 - Implement new search_beam_position methods

Pull Request - State: closed - Opened by mpks 3 months ago

#2808 - use fft and robust test for screw axis

Pull Request - State: closed - Opened by kmdalton 3 months ago - 2 comments

#2807 - Null PR so we can test XFEL

Pull Request - State: closed - Opened by ndevenish 3 months ago - 2 comments

#2806 - `dials.export`: fix error with batch offset calculation

Pull Request - State: open - Opened by dagewa 3 months ago - 1 comment

#2805 - Cannot filter shadowed reflections if no masker

Pull Request - State: closed - Opened by graeme-winter 3 months ago

#2803 - Switch XFEL CI from openmpi to impi_rt

Pull Request - State: closed - Opened by phyy-nx 3 months ago - 1 comment

#2802 - Further DIALS website updates

Pull Request - State: closed - Opened by phyy-nx 3 months ago

#2801 - ``dials.ssx_index``: Add better error handling if scans data input.

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago - 1 comment

#2800 - Fix index assignment bug

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago - 1 comment

#2799 - Local indexing exp ids fix

Pull Request - State: closed - Opened by dagewa 3 months ago - 3 comments

#2798 - Line tool

Pull Request - State: closed - Opened by dagewa 3 months ago - 1 comment

#2797 - `dials.ssx_index`: unhelpful error when passed a scan

Issue - State: closed - Opened by dagewa 3 months ago - 2 comments

#2796 - Tests assign experiment identifiers

Pull Request - State: closed - Opened by yash4karan 3 months ago

#2795 - Recover image chooser scrollbar

Pull Request - State: closed - Opened by dagewa 3 months ago

#2794 - Fix pint dependency error causing failures

Pull Request - State: closed - Opened by ndevenish 3 months ago

#2793 - DIALS 3.22.2

Pull Request - State: closed - Opened by DiamondLightSource-build-server 3 months ago
Labels: upcoming release

#2792 - Switch to Python 3.10 as the minimum

Pull Request - State: closed - Opened by ndevenish 3 months ago

#2791 - Improve stability for test_export_best.py

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago

#2790 - Exclude masked pixels from erosion check

Pull Request - State: open - Opened by dimitrivlachos 3 months ago - 6 comments
Labels: dials.find_spots, dials.image_viewer

#2789 - Running Dials on Apple Silicon?

Issue - State: closed - Opened by AZangiabadi 3 months ago - 5 comments

#2788 - Experiment identifiers added to dials.predict

Pull Request - State: closed - Opened by yash4karan 3 months ago - 3 comments

#2787 - Overhaul elliptical distortion correction

Pull Request - State: closed - Opened by dagewa 3 months ago

#2786 - Fix symmetry not being applied consistently for multiple crystals post indexing

Pull Request - State: closed - Opened by toastisme 3 months ago
Labels: backported

#2785 - dials.find_spots: spots close to the edge of the module are ignored

Issue - State: open - Opened by graeme-winter 3 months ago - 1 comment
Labels: workshop-feedback

#2785 - dials.find_spots: spots close to the edge of the module are ignored

Issue - State: open - Opened by graeme-winter 3 months ago - 1 comment
Labels: workshop-feedback

#2783 - dials.import: if lots of arguments passed e.g. 1000's of CBF files add a progress bar

Issue - State: open - Opened by graeme-winter 3 months ago - 2 comments
Labels: workshop-feedback

#2783 - dials.import: if lots of arguments passed e.g. 1000's of CBF files add a progress bar

Issue - State: closed - Opened by graeme-winter 3 months ago - 2 comments
Labels: workshop-feedback

#2782 - dials.find_spots / macOS / M2 pro / Sonoma much slower with HDF5 than CBF

Issue - State: open - Opened by graeme-winter 3 months ago - 8 comments
Labels: workshop-feedback

#2782 - dials.find_spots / macOS / M2 pro / Sonoma much slower with HDF5 than CBF

Issue - State: open - Opened by graeme-winter 3 months ago - 8 comments
Labels: workshop-feedback

#2781 - Fix beam.get_s0() errors in image viewer for polychromatic data

Pull Request - State: closed - Opened by toastisme 3 months ago - 3 comments

#2781 - Fix beam.get_s0() errors in image viewer for polychromatic data

Pull Request - State: closed - Opened by toastisme 3 months ago - 3 comments

#2780 - R24 website update

Pull Request - State: closed - Opened by phyy-nx 3 months ago - 3 comments

#2779 - Separate entry_points console_scripts from gui_scripts

Pull Request - State: closed - Opened by ndevenish 3 months ago

#2779 - Separate entry_points console_scripts from gui_scripts

Pull Request - State: closed - Opened by ndevenish 3 months ago

#2778 - Reachability plot

Pull Request - State: closed - Opened by amyjaynethompson 4 months ago

#2778 - Reachability plot

Pull Request - State: closed - Opened by amyjaynethompson 4 months ago

#2777 - dials in jupyter: multiple outputs on console

Issue - State: open - Opened by aaronfinke 4 months ago - 1 comment

#2777 - dials in jupyter: multiple outputs on console

Issue - State: open - Opened by aaronfinke 4 months ago - 1 comment

#2776 - Update dials.correlation_matrix phil scope

Pull Request - State: closed - Opened by jbeilstenedmands 4 months ago

#2776 - Update dials.correlation_matrix phil scope

Pull Request - State: closed - Opened by jbeilstenedmands 4 months ago

#2775 - Reading Eiger data on Apple Silicon computers "feels slow"

Issue - State: closed - Opened by graeme-winter 4 months ago - 5 comments
Labels: optimisation

#2775 - Reading Eiger data on Apple Silicon computers "feels slow"

Issue - State: closed - Opened by graeme-winter 4 months ago - 5 comments
Labels: optimisation

#2774 - DIALS 3.22.1

Pull Request - State: closed - Opened by ndevenish 4 months ago
Labels: upcoming release

#2774 - DIALS 3.22.1

Pull Request - State: closed - Opened by ndevenish 4 months ago
Labels: upcoming release

#2772 - dials.scale: add resolution=auto

Issue - State: open - Opened by graeme-winter 4 months ago - 1 comment

#2770 - Cluster cosym coords

Pull Request - State: closed - Opened by amyjaynethompson 4 months ago

#2770 - Cluster cosym coords

Pull Request - State: closed - Opened by amyjaynethompson 4 months ago

#2769 - Switch CI to Github Actions

Pull Request - State: closed - Opened by ndevenish 4 months ago - 1 comment

#2769 - Switch CI to Github Actions

Pull Request - State: closed - Opened by ndevenish 4 months ago - 1 comment

#2768 - Work around micromamba 2.0 memory issue

Pull Request - State: closed - Opened by ndevenish 4 months ago - 1 comment

#2767 - Add error handling to reflection_table.from_msgpack.

Pull Request - State: closed - Opened by toastisme 4 months ago

#2766 - Remove beam.get_s0() call in dials.rlv

Pull Request - State: closed - Opened by toastisme 4 months ago