Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / dials/dials issues and pull requests
#2738 - Remove superseded multi-crystal tutorial
Pull Request -
State: closed - Opened by jbeilstenedmands 14 days ago
#2737 - Suppress output of scipy optimize warning in resolution fitting
Pull Request -
State: closed - Opened by jbeilstenedmands 14 days ago
#2736 - Indexing: Don't ignore errors (via Inspect print(e))
Pull Request -
State: open - Opened by ndevenish 14 days ago
- 1 comment
#2735 - Multi-panel polygon masking in dials.image_viewer
Pull Request -
State: open - Opened by biochem-fan 18 days ago
- 8 comments
#2734 - Is the polarization correction relevant for electrons and neutrons?
Issue -
State: open - Opened by biochem-fan 19 days ago
- 7 comments
Labels: 3DED
#2733 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] 29 days ago
- 1 comment
#2732 - DIALS dependency unification
Pull Request -
State: open - Opened by ndevenish about 1 month ago
- 1 comment
#2731 - Image viewer masking UI fix
Pull Request -
State: closed - Opened by biochem-fan about 1 month ago
- 3 comments
Labels: dials.image_viewer
#2730 - dials.image_viewer: fix stacking of masks and stacking of multiple experiments
Pull Request -
State: open - Opened by biochem-fan about 1 month ago
- 2 comments
Labels: bug, dials.image_viewer
#2729 - Enable radial_profile spot finding algorithm for polychromatic data
Pull Request -
State: closed - Opened by toastisme about 1 month ago
#2728 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 month ago
- 1 comment
#2727 - Allow bootstrap to build release branches with CMake
Pull Request -
State: closed - Opened by ndevenish about 1 month ago
#2726 - DIALS 3.21.1
Pull Request -
State: closed - Opened by DiamondLightSource-build-server about 1 month ago
- 1 comment
Labels: upcoming release
#2725 - convert_stills_to_sequence=True makes a unified beam model
Issue -
State: open - Opened by biochem-fan about 1 month ago
- 1 comment
Labels: dials.import
#2724 - Image stacking does not work with stills
Issue -
State: open - Opened by biochem-fan about 1 month ago
- 3 comments
Labels: bug, dials.image_viewer
#2723 - Protect gemmi tests against missing gemmi executable
Pull Request -
State: closed - Opened by ndevenish about 1 month ago
- 1 comment
#2722 - [pre-commit.ci] pre-commit autoupdate
Pull Request -
State: closed - Opened by pre-commit-ci[bot] about 1 month ago
- 1 comment
#2721 - Move away move away from using `pickle` for masks
Issue -
State: open - Opened by phyy-nx about 1 month ago
- 1 comment
Labels: enhancement
#2720 - Cannot process Eiger data with DIALS
Issue -
State: closed - Opened by markArmstrong989 about 2 months ago
- 2 comments
#2719 - `dials.combine_experiments`: it would be useful if the input files were listed in the log
Issue -
State: open - Opened by dagewa about 2 months ago
- 2 comments
Labels: enhancement
#2718 - Reflection table performance improvement
Pull Request -
State: closed - Opened by dwpaley about 2 months ago
- 2 comments
#2717 - Fast feedback indexer
Pull Request -
State: open - Opened by dagewa about 2 months ago
- 3 comments
#2716 - Add input parameters to xia2/dials?
Issue -
State: open - Opened by mysecondnameisdanger 2 months ago
- 1 comment
#2715 - Modified branching to Laue refinement methods
Pull Request -
State: closed - Opened by toastisme 2 months ago
#2714 - Tidy warning around joint_indexing
Pull Request -
State: closed - Opened by graeme-winter 2 months ago
- 1 comment
#2713 - Only print alert if > 1 scan
Issue -
State: closed - Opened by graeme-winter 2 months ago
#2712 - Mask generation for multi-panel detectors
Issue -
State: open - Opened by biochem-fan 2 months ago
- 12 comments
Labels: enhancement, dials.image_viewer
#2711 - Allow combining masks using dials.generate_mask
Pull Request -
State: closed - Opened by phyy-nx 2 months ago
- 5 comments
#2710 - dials.import creates big scans under some circumstances
Issue -
State: open - Opened by graeme-winter 2 months ago
Labels: bug
#2709 - Updates to mmcif export
Pull Request -
State: closed - Opened by jbeilstenedmands 2 months ago
- 1 comment
#2708 - Importing dials.array_family makes spawning with NumPy arrays slower
Issue -
State: open - Opened by biochem-fan 2 months ago
- 4 comments
Labels: bug
#2707 - Fix `dials.reciprocal_lattice_viewer` middle mouse drag to translate
Pull Request -
State: closed - Opened by dagewa 2 months ago
- 4 comments
#2706 - `dials.reciprocal_lattice_viewer`: middle mouse drag to translate is broken
Issue -
State: closed - Opened by dagewa 2 months ago
#2705 - Attempt at Fast Feedback Indexer implementation of the TORO algorithm
Pull Request -
State: closed - Opened by hcstadler 2 months ago
#2704 - Add scaling corrections for time-of-flight data
Pull Request -
State: closed - Opened by toastisme 2 months ago
#2703 - OpenGL missing from DIALS from conda on Windows
Issue -
State: closed - Opened by dagewa 2 months ago
- 8 comments
#2702 - Add additional reflection properties to save after indexing.
Pull Request -
State: closed - Opened by toastisme 2 months ago
#2701 - Oversample the FFT in dials.symmetry method=fourier
Pull Request -
State: open - Opened by kmdalton 3 months ago
- 5 comments
#2700 - Convert merged MTZ export to use gemmi
Pull Request -
State: closed - Opened by dagewa 3 months ago
- 4 comments
#2699 - Fix potential crash in indexing max cell estimation if all spots are ice ring resolution
Pull Request -
State: closed - Opened by jbeilstenedmands 3 months ago
- 1 comment
#2698 - Increase image_viewer ring tool maximum size
Pull Request -
State: closed - Opened by ndevenish 3 months ago
#2697 - Increase the max radius of the Ring Tool
Issue -
State: closed - Opened by biochem-fan 3 months ago
- 1 comment
Labels: dials.image_viewer
#2696 - dials.symmetry: allow free selection of `significance_level` in the range [0,1]
Pull Request -
State: closed - Opened by dagewa 3 months ago
- 1 comment
#2695 - Adjust tolerances for sys abs check in dials.symmetry
Issue -
State: closed - Opened by dagewa 3 months ago
- 8 comments
#2694 - squashed paths in stills process
Issue -
State: open - Opened by dermen 3 months ago
- 2 comments
Labels: bug
#2693 - squashed paths
Issue -
State: closed - Opened by dermen 3 months ago
- 2 comments
#2692 - Updates for the small molecule tutorial
Pull Request -
State: closed - Opened by dagewa 3 months ago
- 2 comments
#2691 - Convert merged MTZ export to use gemmi
Issue -
State: closed - Opened by dagewa 3 months ago
#2690 - Docker build fails as CentOS 7 is now EOL
Issue -
State: closed - Opened by isikhar 3 months ago
#2689 - Build dials image from rockylinux:8 fixes #2690
Pull Request -
State: closed - Opened by isikhar 3 months ago
- 2 comments
#2688 - Fix matplotlib v3.9 colormaps
Pull Request -
State: closed - Opened by dagewa 3 months ago
- 5 comments
#2687 - In the scans indexer, do not convert mm to px when `indexing.refinement_protocol.mode==None`
Pull Request -
State: closed - Opened by dagewa 3 months ago
- 4 comments
#2686 - Setting refinement_protocol.mode=None for dials.index can result in failure
Issue -
State: closed - Opened by PrinceWalnut 3 months ago
- 1 comment
#2685 - Update dials.refine_error_model to allow grouped and individual refinements
Pull Request -
State: open - Opened by jbeilstenedmands 3 months ago
- 1 comment
#2684 - dials.merge does not write a space group name P2111
Issue -
State: closed - Opened by biochem-fan 3 months ago
- 3 comments
#2683 - Docstrings and type hints for `reindex_experiments` and `reindex_reflections`
Pull Request -
State: closed - Opened by dagewa 3 months ago
- 1 comment
#2682 - Add docstring to `reindex_reflections` to make it clear it takes a list of reflection tables
Issue -
State: closed - Opened by dagewa 3 months ago
- 3 comments
#2681 - Data id fix
Pull Request -
State: closed - Opened by amyjaynethompson 3 months ago
#2680 - Fix Pinkindexer Bug
Pull Request -
State: closed - Opened by kmdalton 3 months ago
- 1 comment
#2679 - Don't modify in place for flex.reflection_table.concat
Pull Request -
State: closed - Opened by jbeilstenedmands 3 months ago
- 1 comment
#2678 - Change logger statements in spot finding to use f-strings
Pull Request -
State: open - Opened by toastisme 4 months ago
- 1 comment
#2677 - Add option to save reflection table to a HDF5 file format
Pull Request -
State: open - Opened by jbeilstenedmands 4 months ago
- 2 comments
#2676 - Add MCD outlier rejection to stills
Pull Request -
State: open - Opened by phyy-nx 4 months ago
- 7 comments
#2675 - Switch linting/formatting to ruff
Pull Request -
State: closed - Opened by ndevenish 4 months ago
#2674 - Fix issue with cosym cc calculation when running with a space group
Pull Request -
State: closed - Opened by jbeilstenedmands 4 months ago
#2673 - Fix issue with cosym cc_weights calculation for low n
Pull Request -
State: closed - Opened by jbeilstenedmands 4 months ago
#2672 - Add dials.split_still_data utility program
Pull Request -
State: closed - Opened by jbeilstenedmands 4 months ago
#2671 - With clustering tables
Pull Request -
State: closed - Opened by amyjaynethompson 4 months ago
#2670 - Add reflection selection criteria to `dials.find_rotation_axis`
Pull Request -
State: closed - Opened by dagewa 4 months ago
- 1 comment
#2669 - Failure to read old (2019) I03 data
Issue -
State: closed - Opened by dagewa 4 months ago
- 3 comments
#2668 - Fix recent ccweights code for uncalculable correlations
Pull Request -
State: closed - Opened by jbeilstenedmands 4 months ago
#2667 - Reset reflection table ids in image grouping code
Pull Request -
State: closed - Opened by jbeilstenedmands 5 months ago
- 1 comment
#2666 - Add weighting option to cosym CC calculation
Pull Request -
State: closed - Opened by jbeilstenedmands 5 months ago
#2665 - Explicit erosion
Pull Request -
State: open - Opened by graeme-winter 5 months ago
- 2 comments
#2664 - Trap d_min > d_max in masking
Pull Request -
State: closed - Opened by graeme-winter 5 months ago
- 1 comment
#2663 - Trivial: if d_max < d_min throw error
Issue -
State: closed - Opened by graeme-winter 5 months ago
#2662 - Enable time-of-flight indexing and Laue/ToF refinement
Pull Request -
State: closed - Opened by toastisme 5 months ago
- 6 comments
#2661 - Add option to apply partiality correction for ellipsoid integration.
Pull Request -
State: closed - Opened by jbeilstenedmands 5 months ago
- 3 comments
#2660 - Fix dials.show for time of flight experiments.
Pull Request -
State: closed - Opened by toastisme 5 months ago
#2659 - dials.refine does not write out the refined orientation of a multi-axis goniometer
Issue -
State: open - Opened by dagewa 5 months ago
- 1 comment
Labels: bug
#2658 - Allow `dials.find_rotation_axis` to work with multi-axis goniometers
Pull Request -
State: closed - Opened by dagewa 5 months ago
- 1 comment
#2657 - Document: distance calculation for morphological erosion
Issue -
State: open - Opened by graeme-winter 5 months ago
- 3 comments
#2656 - `dials.find_rotation_axis` does not set the found axis for a multi-axis goniometer
Issue -
State: closed - Opened by dagewa 5 months ago
- 2 comments
#2655 - Can we improve the plotly mouseover tooltips for resolution?
Issue -
State: open - Opened by dagewa 5 months ago
- 3 comments
Labels: enhancement
#2654 - Updates to dials.scale error modelling to handle stills data
Pull Request -
State: closed - Opened by jbeilstenedmands 5 months ago
#2653 - dials.index: do not write out reflections for removed experiments
Pull Request -
State: open - Opened by dagewa 5 months ago
- 5 comments
#2652 - `dials.index` writes out reflections for a rejected experiment
Issue -
State: open - Opened by dagewa 5 months ago
- 4 comments
Labels: bug
#2651 - Enable Python 3.12
Pull Request -
State: closed - Opened by ndevenish 5 months ago
#2650 - dials.integrate d_min= should be obvious
Issue -
State: open - Opened by graeme-winter 5 months ago
- 3 comments
#2649 - XFEL regression: try using the conda-forge channel
Pull Request -
State: closed - Opened by phyy-nx 6 months ago
- 3 comments
#2648 - Update gltbx presence test for RLV
Pull Request -
State: closed - Opened by ndevenish 6 months ago
#2647 - dials.import_xds shows no signs of working
Issue -
State: open - Opened by graeme-winter 6 months ago
- 6 comments
#2646 - Fix crash in exporting scaled still-shot data with dials.export
Pull Request -
State: closed - Opened by jbeilstenedmands 6 months ago
- 1 comment
#2645 - Add mesa-libGL to linux bootstrap installations
Pull Request -
State: closed - Opened by ndevenish 6 months ago
#2644 - Fix RHEL8+ gltbx compilation
Pull Request -
State: closed - Opened by ndevenish 6 months ago
- 2 comments
#2643 - DIALS 3.18.2
Pull Request -
State: closed - Opened by DiamondLightSource-build-server 6 months ago
- 1 comment
Labels: upcoming release, PR: merge conflicts
#2642 - Fix error in propagation of partiality variance for scaling still shot data
Pull Request -
State: closed - Opened by jbeilstenedmands 6 months ago
- 1 comment
#2641 - Remove all find_spots_server tests
Pull Request -
State: closed - Opened by ndevenish 6 months ago
#2640 - Resolution estimation fails with data from image plates
Issue -
State: closed - Opened by graeme-winter 6 months ago
- 1 comment
#2639 - `reflection_table.extract_shoeboxes` unexpectedly returns empty shoeboxes
Issue -
State: open - Opened by LuisA92 6 months ago
- 3 comments