Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / dials/dials issues and pull requests

#2738 - Remove superseded multi-crystal tutorial

Pull Request - State: closed - Opened by jbeilstenedmands 14 days ago

#2736 - Indexing: Don't ignore errors (via Inspect print(e))

Pull Request - State: open - Opened by ndevenish 14 days ago - 1 comment

#2735 - Multi-panel polygon masking in dials.image_viewer

Pull Request - State: open - Opened by biochem-fan 18 days ago - 8 comments

#2734 - Is the polarization correction relevant for electrons and neutrons?

Issue - State: open - Opened by biochem-fan 19 days ago - 7 comments
Labels: 3DED

#2733 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 29 days ago - 1 comment

#2732 - DIALS dependency unification

Pull Request - State: open - Opened by ndevenish about 1 month ago - 1 comment

#2731 - Image viewer masking UI fix

Pull Request - State: closed - Opened by biochem-fan about 1 month ago - 3 comments
Labels: dials.image_viewer

#2730 - dials.image_viewer: fix stacking of masks and stacking of multiple experiments

Pull Request - State: open - Opened by biochem-fan about 1 month ago - 2 comments
Labels: bug, dials.image_viewer

#2729 - Enable radial_profile spot finding algorithm for polychromatic data

Pull Request - State: closed - Opened by toastisme about 1 month ago

#2728 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago - 1 comment

#2727 - Allow bootstrap to build release branches with CMake

Pull Request - State: closed - Opened by ndevenish about 1 month ago

#2726 - DIALS 3.21.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server about 1 month ago - 1 comment
Labels: upcoming release

#2725 - convert_stills_to_sequence=True makes a unified beam model

Issue - State: open - Opened by biochem-fan about 1 month ago - 1 comment
Labels: dials.import

#2724 - Image stacking does not work with stills

Issue - State: open - Opened by biochem-fan about 1 month ago - 3 comments
Labels: bug, dials.image_viewer

#2723 - Protect gemmi tests against missing gemmi executable

Pull Request - State: closed - Opened by ndevenish about 1 month ago - 1 comment

#2722 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago - 1 comment

#2721 - Move away move away from using `pickle` for masks

Issue - State: open - Opened by phyy-nx about 1 month ago - 1 comment
Labels: enhancement

#2720 - Cannot process Eiger data with DIALS

Issue - State: closed - Opened by markArmstrong989 about 2 months ago - 2 comments

#2719 - `dials.combine_experiments`: it would be useful if the input files were listed in the log

Issue - State: open - Opened by dagewa about 2 months ago - 2 comments
Labels: enhancement

#2718 - Reflection table performance improvement

Pull Request - State: closed - Opened by dwpaley about 2 months ago - 2 comments

#2717 - Fast feedback indexer

Pull Request - State: open - Opened by dagewa about 2 months ago - 3 comments

#2716 - Add input parameters to xia2/dials?

Issue - State: open - Opened by mysecondnameisdanger 2 months ago - 1 comment

#2715 - Modified branching to Laue refinement methods

Pull Request - State: closed - Opened by toastisme 2 months ago

#2714 - Tidy warning around joint_indexing

Pull Request - State: closed - Opened by graeme-winter 2 months ago - 1 comment

#2713 - Only print alert if > 1 scan

Issue - State: closed - Opened by graeme-winter 2 months ago

#2712 - Mask generation for multi-panel detectors

Issue - State: open - Opened by biochem-fan 2 months ago - 12 comments
Labels: enhancement, dials.image_viewer

#2711 - Allow combining masks using dials.generate_mask

Pull Request - State: closed - Opened by phyy-nx 2 months ago - 5 comments

#2710 - dials.import creates big scans under some circumstances

Issue - State: open - Opened by graeme-winter 2 months ago
Labels: bug

#2709 - Updates to mmcif export

Pull Request - State: closed - Opened by jbeilstenedmands 2 months ago - 1 comment

#2708 - Importing dials.array_family makes spawning with NumPy arrays slower

Issue - State: open - Opened by biochem-fan 2 months ago - 4 comments
Labels: bug

#2707 - Fix `dials.reciprocal_lattice_viewer` middle mouse drag to translate

Pull Request - State: closed - Opened by dagewa 2 months ago - 4 comments

#2704 - Add scaling corrections for time-of-flight data

Pull Request - State: closed - Opened by toastisme 2 months ago

#2703 - OpenGL missing from DIALS from conda on Windows

Issue - State: closed - Opened by dagewa 2 months ago - 8 comments

#2702 - Add additional reflection properties to save after indexing.

Pull Request - State: closed - Opened by toastisme 2 months ago

#2701 - Oversample the FFT in dials.symmetry method=fourier

Pull Request - State: open - Opened by kmdalton 3 months ago - 5 comments

#2700 - Convert merged MTZ export to use gemmi

Pull Request - State: closed - Opened by dagewa 3 months ago - 4 comments

#2698 - Increase image_viewer ring tool maximum size

Pull Request - State: closed - Opened by ndevenish 3 months ago

#2697 - Increase the max radius of the Ring Tool

Issue - State: closed - Opened by biochem-fan 3 months ago - 1 comment
Labels: dials.image_viewer

#2696 - dials.symmetry: allow free selection of `significance_level` in the range [0,1]

Pull Request - State: closed - Opened by dagewa 3 months ago - 1 comment

#2695 - Adjust tolerances for sys abs check in dials.symmetry

Issue - State: closed - Opened by dagewa 3 months ago - 8 comments

#2694 - squashed paths in stills process

Issue - State: open - Opened by dermen 3 months ago - 2 comments
Labels: bug

#2693 - squashed paths

Issue - State: closed - Opened by dermen 3 months ago - 2 comments

#2692 - Updates for the small molecule tutorial

Pull Request - State: closed - Opened by dagewa 3 months ago - 2 comments

#2691 - Convert merged MTZ export to use gemmi

Issue - State: closed - Opened by dagewa 3 months ago

#2690 - Docker build fails as CentOS 7 is now EOL

Issue - State: closed - Opened by isikhar 3 months ago

#2689 - Build dials image from rockylinux:8 fixes #2690

Pull Request - State: closed - Opened by isikhar 3 months ago - 2 comments

#2688 - Fix matplotlib v3.9 colormaps

Pull Request - State: closed - Opened by dagewa 3 months ago - 5 comments

#2684 - dials.merge does not write a space group name P2111

Issue - State: closed - Opened by biochem-fan 3 months ago - 3 comments

#2683 - Docstrings and type hints for `reindex_experiments` and `reindex_reflections`

Pull Request - State: closed - Opened by dagewa 3 months ago - 1 comment

#2681 - Data id fix

Pull Request - State: closed - Opened by amyjaynethompson 3 months ago

#2680 - Fix Pinkindexer Bug

Pull Request - State: closed - Opened by kmdalton 3 months ago - 1 comment

#2679 - Don't modify in place for flex.reflection_table.concat

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago - 1 comment

#2678 - Change logger statements in spot finding to use f-strings

Pull Request - State: open - Opened by toastisme 4 months ago - 1 comment

#2677 - Add option to save reflection table to a HDF5 file format

Pull Request - State: open - Opened by jbeilstenedmands 4 months ago - 2 comments

#2676 - Add MCD outlier rejection to stills

Pull Request - State: open - Opened by phyy-nx 4 months ago - 7 comments

#2675 - Switch linting/formatting to ruff

Pull Request - State: closed - Opened by ndevenish 4 months ago

#2673 - Fix issue with cosym cc_weights calculation for low n

Pull Request - State: closed - Opened by jbeilstenedmands 4 months ago

#2672 - Add dials.split_still_data utility program

Pull Request - State: closed - Opened by jbeilstenedmands 4 months ago

#2671 - With clustering tables

Pull Request - State: closed - Opened by amyjaynethompson 4 months ago

#2670 - Add reflection selection criteria to `dials.find_rotation_axis`

Pull Request - State: closed - Opened by dagewa 4 months ago - 1 comment

#2669 - Failure to read old (2019) I03 data

Issue - State: closed - Opened by dagewa 4 months ago - 3 comments

#2668 - Fix recent ccweights code for uncalculable correlations

Pull Request - State: closed - Opened by jbeilstenedmands 4 months ago

#2667 - Reset reflection table ids in image grouping code

Pull Request - State: closed - Opened by jbeilstenedmands 5 months ago - 1 comment

#2666 - Add weighting option to cosym CC calculation

Pull Request - State: closed - Opened by jbeilstenedmands 5 months ago

#2665 - Explicit erosion

Pull Request - State: open - Opened by graeme-winter 5 months ago - 2 comments

#2664 - Trap d_min > d_max in masking

Pull Request - State: closed - Opened by graeme-winter 5 months ago - 1 comment

#2663 - Trivial: if d_max < d_min throw error

Issue - State: closed - Opened by graeme-winter 5 months ago

#2662 - Enable time-of-flight indexing and Laue/ToF refinement

Pull Request - State: closed - Opened by toastisme 5 months ago - 6 comments

#2661 - Add option to apply partiality correction for ellipsoid integration.

Pull Request - State: closed - Opened by jbeilstenedmands 5 months ago - 3 comments

#2660 - Fix dials.show for time of flight experiments.

Pull Request - State: closed - Opened by toastisme 5 months ago

#2659 - dials.refine does not write out the refined orientation of a multi-axis goniometer

Issue - State: open - Opened by dagewa 5 months ago - 1 comment
Labels: bug

#2658 - Allow `dials.find_rotation_axis` to work with multi-axis goniometers

Pull Request - State: closed - Opened by dagewa 5 months ago - 1 comment

#2657 - Document: distance calculation for morphological erosion

Issue - State: open - Opened by graeme-winter 5 months ago - 3 comments

#2655 - Can we improve the plotly mouseover tooltips for resolution?

Issue - State: open - Opened by dagewa 5 months ago - 3 comments
Labels: enhancement

#2653 - dials.index: do not write out reflections for removed experiments

Pull Request - State: open - Opened by dagewa 5 months ago - 5 comments

#2652 - `dials.index` writes out reflections for a rejected experiment

Issue - State: open - Opened by dagewa 5 months ago - 4 comments
Labels: bug

#2651 - Enable Python 3.12

Pull Request - State: closed - Opened by ndevenish 5 months ago

#2650 - dials.integrate d_min= should be obvious

Issue - State: open - Opened by graeme-winter 5 months ago - 3 comments

#2649 - XFEL regression: try using the conda-forge channel

Pull Request - State: closed - Opened by phyy-nx 6 months ago - 3 comments

#2648 - Update gltbx presence test for RLV

Pull Request - State: closed - Opened by ndevenish 6 months ago

#2647 - dials.import_xds shows no signs of working

Issue - State: open - Opened by graeme-winter 6 months ago - 6 comments

#2646 - Fix crash in exporting scaled still-shot data with dials.export

Pull Request - State: closed - Opened by jbeilstenedmands 6 months ago - 1 comment

#2645 - Add mesa-libGL to linux bootstrap installations

Pull Request - State: closed - Opened by ndevenish 6 months ago

#2644 - Fix RHEL8+ gltbx compilation

Pull Request - State: closed - Opened by ndevenish 6 months ago - 2 comments

#2643 - DIALS 3.18.2

Pull Request - State: closed - Opened by DiamondLightSource-build-server 6 months ago - 1 comment
Labels: upcoming release, PR: merge conflicts

#2641 - Remove all find_spots_server tests

Pull Request - State: closed - Opened by ndevenish 6 months ago

#2640 - Resolution estimation fails with data from image plates

Issue - State: closed - Opened by graeme-winter 6 months ago - 1 comment