dfsp-spirit/fsbrain issues and pull requests

#54 - Add title to plots

Issue - State: open - Opened by GerardYu 8 months ago - 1 comment
Labels: enhancement, question

#53 - Saving annotation to file

Issue - State: open - Opened by iamjoostjanssen 11 months ago - 2 comments
Labels: question

#52 - Error: rgl.viewpoint is depreciated

Issue - State: closed - Opened by cooperr11 about 1 year ago - 5 comments

#51 - save output as grob objects

Issue - State: open - Opened by GerardYu about 1 year ago - 1 comment
Labels: question

#50 - Tight layout with 9 view inflated

Issue - State: closed - Opened by mattsodoma over 1 year ago - 8 comments
Labels: bug

#49 - 9 view inflated surface

Issue - State: closed - Opened by mattsodoma over 1 year ago - 1 comment

#48 - Change rgl.* calls to *3d calls.

Pull Request - State: closed - Opened by dmurdoch over 1 year ago - 1 comment

#47 - MacOS support of fsbrain

Issue - State: closed - Opened by dfsp-spirit over 1 year ago - 2 comments
Labels: more info needed, investigate, infrastructure, upstream

#46 - No figure output

Issue - State: closed - Opened by rb643 over 1 year ago - 20 comments
Labels: bug

#45 - No picture out after running "vis.subject.annot" code in Ubuntu 20.04

Issue - State: closed - Opened by Clancy-wu over 1 year ago - 6 comments
Labels: investigate, upstream

#44 - Support plotting on log scale

Issue - State: closed - Opened by dfsp-spirit over 1 year ago - 1 comment
Labels: enhancement

#43 - better documentation structure

Pull Request - State: closed - Opened by dfsp-spirit almost 2 years ago

#42 - Backup nitestdata on public, scientific repo

Issue - State: open - Opened by dfsp-spirit almost 2 years ago - 1 comment
Labels: investigate, infrastructure

#41 - Export directly

Issue - State: closed - Opened by mattsodoma almost 2 years ago - 5 comments
Labels: documentation, question

#40 - visualising group difference maps

Issue - State: open - Opened by MaLiUHH about 2 years ago - 8 comments
Labels: question

#39 - Render with R-shiny

Issue - State: open - Opened by dipterix about 2 years ago - 2 comments
Labels: investigate

#38 - display p-values overlay

Issue - State: open - Opened by knutj about 2 years ago - 1 comment
Labels: question

#37 - New fsbrain installation on M1 Mac does not show colorbar

Issue - State: open - Opened by utooley over 2 years ago - 3 comments
Labels: investigate

#36 - datastructure returned by label.to.annot does not have 'fs.annot' class

Issue - State: closed - Opened by dfsp-spirit over 2 years ago - 1 comment
Labels: bug

#35 - Inflated views intertwined

Issue - State: closed - Opened by signebray over 2 years ago - 3 comments
Labels: duplicate

#34 - Error in setwd(dir) : cannot change working directory - while creating GIF movie using fsbrain locally

Issue - State: closed - Opened by XinQi7788 over 2 years ago - 1 comment

#33 - Issues to create a GIF file using fsbrain docker image

Issue - State: closed - Opened by XinQi7788 over 2 years ago - 1 comment

#32 - Is it possible to visualize the Surface and Volume at the same time?

Issue - State: closed - Opened by wjddyd66 almost 3 years ago - 2 comments
Labels: question, more info needed

#31 - coloredmesh from Brain surface trimesh and values vector

Issue - State: closed - Opened by rcruces almost 3 years ago - 7 comments
Labels: question

#30 - Snapshot at an angle?

Issue - State: closed - Opened by utooley almost 3 years ago - 3 comments

#29 - I have a question about lh_region_value_list & rh_region_value_list

Issue - State: closed - Opened by wjddyd66 almost 3 years ago - 5 comments
Labels: question

#28 - annot.outline as a background

Issue - State: open - Opened by AndrewLawrence almost 3 years ago - 3 comments
Labels: bug

#27 - Problem with basic visualization in tutorial

Issue - State: closed - Opened by gpdm94 about 3 years ago - 4 comments

#26 - Getting error that the subject file is missing even though the subject file is present in the subjects directory.

Issue - State: closed - Opened by vaidehithakre21 about 3 years ago - 14 comments
Labels: documentation, question, more info needed

#25 - highlighting directly adjacent vertices fails with error

Issue - State: closed - Opened by dfsp-spirit about 3 years ago - 1 comment
Labels: bug, dev-version

#24 - Visualising volume data with surface boundaries

Issue - State: open - Opened by sidchop about 3 years ago - 3 comments
Labels: enhancement

#23 - Update coloredmesh.R

Pull Request - State: closed - Opened by zhenglukai about 3 years ago - 2 comments

#22 - Create fsbrain API cheat sheet

Issue - State: closed - Opened by dfsp-spirit about 3 years ago - 1 comment
Labels: documentation, wontfix

#21 - Fix white stripes in custom background of images exported with vis.export.from.coloredmeshes

Issue - State: closed - Opened by dfsp-spirit about 3 years ago - 1 comment
Labels: bug, dev-version

#20 - makecmap_options 'range' return error and Additional view

Issue - State: closed - Opened by rcruces over 3 years ago - 6 comments
Labels: bug, documentation

#19 - Min/Max setting in plotting

Issue - State: closed - Opened by rb643 over 3 years ago - 17 comments
Labels: bug, documentation

#18 - Problem with tutorial

Issue - State: closed - Opened by shima-jalalian over 3 years ago - 3 comments
Labels: documentation, question

#17 - Match the background vertices and results vertices

Issue - State: closed - Opened by icupsy almost 4 years ago - 6 comments
Labels: invalid

#16 - Neuroconductor CI

Issue - State: closed - Opened by dfsp-spirit almost 4 years ago - 2 comments
Labels: bug, enhancement

#15 - Make it easy to get additional brain atlases

Issue - State: closed - Opened by dfsp-spirit almost 4 years ago - 3 comments
Labels: enhancement

#14 - Multi-layer transparency

Issue - State: open - Opened by dfsp-spirit almost 4 years ago
Labels: bug

#13 - Add custom lobe annotation to be able to use vis.region.values.on.subject with lobes

Issue - State: closed - Opened by dfsp-spirit almost 4 years ago - 1 comment
Labels: enhancement, wontfix

#12 - Support writing subject metadata to separate MD file when saving cached data for groups

Issue - State: closed - Opened by dfsp-spirit almost 4 years ago - 2 comments
Labels: enhancement, wontfix

#11 - fsaverage.path() should prefer FreeSurfer version over local download

Issue - State: closed - Opened by dfsp-spirit almost 4 years ago - 1 comment
Labels: bug, enhancement

#10 - High-level interface to export publication quality figure with colorbar

Issue - State: closed - Opened by dfsp-spirit about 4 years ago - 1 comment
Labels: enhancement

#9 - Support passing data for both hemispheres in a single vector to vis functions

Issue - State: closed - Opened by dfsp-spirit about 4 years ago - 1 comment
Labels: enhancement

#8 - Support limiting the plotted data range

Issue - State: closed - Opened by dfsp-spirit about 4 years ago - 1 comment
Labels: enhancement

#7 - Views other than t4 garbled for inflated and vis.x.on.subject

Issue - State: closed - Opened by utooley about 4 years ago - 5 comments
Labels: enhancement

#6 - Symmetrical colorbars are drawn incorrectly

Issue - State: closed - Opened by dfsp-spirit about 4 years ago - 2 comments
Labels: bug

#5 - Colormap over BG + Saving

Issue - State: closed - Opened by dbrennan44 about 4 years ago - 2 comments
Labels: enhancement

#4 - Rendering of standard space morphometry data looks off

Issue - State: closed - Opened by dfsp-spirit over 4 years ago - 1 comment
Labels: bug

#3 - Gray/Black inflated brain (like freesurfer)

Issue - State: closed - Opened by dbrennan44 over 4 years ago - 12 comments
Labels: enhancement

#2 - Parameter cortex_only ignored by group.morph.agg.native and group.morph.agg.standard

Issue - State: closed - Opened by dfsp-spirit over 4 years ago - 1 comment
Labels: bug

#1 - Meshes look garbled (like spiky abstract stuff) in the visualization

Issue - State: closed - Opened by dfsp-spirit over 4 years ago - 1 comment
Labels: bug

GitHub / dfsp-spirit/fsbrain issues and pull requests