deweylab/CellO issues and pull requests

#30 - Bump scipy from 1.3.1 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#29 - fix resource download URL

Issue - State: closed - Opened by carsten-jahn over 1 year ago - 1 comment

#28 - Error when install CellO

Issue - State: open - Opened by Chrisdoan9 almost 2 years ago - 11 comments

#27 - sparsematrix toarray in cello.py

Issue - State: closed - Opened by brainfo about 2 years ago - 2 comments

#26 - support layer selection for anndata

Issue - State: open - Opened by brainfo about 2 years ago

#25 - ValueError: Unable to determine gene collection

Issue - State: open - Opened by tingxie2020 about 2 years ago - 4 comments

#24 - Bump numpy from 1.17.1 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#23 - Understanding assignment of most specific cell type

Issue - State: open - Opened by LustigePerson over 2 years ago

#22 - Optionally return graph object from cello_probs

Pull Request - State: closed - Opened by LustigePerson over 2 years ago - 3 comments

#21 - Error after not finding pre-training models (ir.dill)

Issue - State: open - Opened by ivandatasci over 2 years ago - 3 comments

#20 - Error when Transforming with PCA...

Issue - State: closed - Opened by ScreachingFire over 2 years ago - 4 comments

#19 - A little advice

Issue - State: open - Opened by libmelo over 2 years ago - 2 comments

#18 - add fix for no specific label

Pull Request - State: open - Opened by Jon-bioinfo over 2 years ago - 1 comment

#17 - Could you provide a ftp link to the CellO resources?

Issue - State: closed - Opened by brainfo over 2 years ago - 2 comments

#16 - Fix bug: _combine_by_cluster

Pull Request - State: closed - Opened by Ann-Holmes over 2 years ago

#15 - annotation for other species

Issue - State: closed - Opened by wangjiawen2013 over 2 years ago - 1 comment

#14 - KeyError: 'leiden' when setting the parameter clust_key

Issue - State: closed - Opened by andreassteffen over 2 years ago - 4 comments

#13 - KeyError in scanpy_cello(); most specific cell type not created

Issue - State: open - Opened by phjanssen almost 3 years ago - 2 comments

#12 - Erroneous assignments on 10k PBMC from 10x

Issue - State: closed - Opened by apredeus almost 3 years ago - 4 comments

#11 - About the PCA loadings matrix U

Issue - State: closed - Opened by Mingjiang-git almost 3 years ago - 6 comments

#10 - About preprocessor of PCA in pre-train

Issue - State: closed - Opened by Mingjiang-git almost 3 years ago - 3 comments

#9 - why every cluster is predicted as "oxygen accumulating cell (CL:0000329)"?

Issue - State: closed - Opened by hurleyLi about 3 years ago - 3 comments

#8 - loop of ufunc does not support argument 0

Issue - State: closed - Opened by mbcouger over 3 years ago - 7 comments

#7 - PCA Error

Issue - State: closed - Opened by mbcouger over 3 years ago - 4 comments

#6 - resources are downloaded even if -f specified

Issue - State: closed - Opened by Jon-bioinfo over 3 years ago - 3 comments

#5 - InvalidIndexError: Reindexing only valid with uniquely valued Index objects

Issue - State: closed - Opened by akk01 over 3 years ago - 3 comments

#4 - no output files

Issue - State: closed - Opened by leeyoyohku over 3 years ago - 2 comments

Ecosyste.ms: Issues

GitHub / deweylab/CellO issues and pull requests